Wall clock time and date at job start Tue Mar 31 2020 13:46:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.47216 * 2 1 4 4 H 1.08997 * 109.46751 * 54.99894 * 3 2 1 5 5 C 1.50691 * 109.47093 * 174.99806 * 3 2 1 6 6 H 1.08010 * 119.99857 * 120.00167 * 5 3 2 7 7 C 1.37874 * 120.00652 * 300.00190 * 5 3 2 8 8 N 1.31521 * 119.99652 * 359.97438 * 7 5 3 9 9 Si 1.86805 * 120.00502 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.46827 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.47297 * 119.99689 * 9 7 5 12 12 H 1.48496 * 109.46749 * 239.99618 * 9 7 5 13 13 N 1.46499 * 109.47067 * 295.00246 * 3 2 1 14 14 C 1.40755 * 120.00083 * 84.99752 * 13 3 2 15 15 C 1.38325 * 122.54475 * 359.97438 * 14 13 3 16 16 C 1.34784 * 114.67244 * 180.02562 * 15 14 13 17 17 C 1.47900 * 125.21621 * 180.02562 * 16 15 14 18 18 N 1.34206 * 126.70416 * 359.68034 * 17 16 15 19 19 N 1.28991 * 107.25211 * 179.83569 * 18 17 16 20 20 N 1.28719 * 108.98964 * 0.43721 * 19 18 17 21 21 H 0.97000 * 125.31389 * 179.74019 * 20 19 18 22 22 N 1.28866 * 109.37015 * 359.72460 * 20 19 18 23 23 S 1.75860 * 109.56275 * 359.75557 * 16 15 14 24 24 C 1.33984 * 122.53873 * 180.02562 * 14 13 3 25 25 N 1.48226 * 125.11817 * 359.95636 * 24 14 13 26 26 O 1.21803 * 119.99871 * 359.97438 * 25 24 14 27 27 O 1.21799 * 119.99926 * 179.72825 * 25 24 14 28 28 H 1.08999 * 109.46685 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46904 * 300.00280 * 1 2 3 30 30 H 1.08996 * 109.46996 * 60.00278 * 1 2 3 31 31 H 1.08998 * 109.47634 * 239.99866 * 2 1 3 32 32 H 1.09001 * 109.47425 * 119.99913 * 2 1 3 33 33 H 0.97001 * 119.99726 * 180.02562 * 8 7 5 34 34 H 0.97001 * 119.99933 * 264.99809 * 13 3 2 35 35 H 1.07997 * 122.66236 * 0.04032 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4443 0.1239 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8784 1.2279 8 7 3.4062 0.3374 2.1733 9 14 6.0050 0.8813 1.3818 10 1 6.5988 1.5463 0.1942 11 1 6.3991 1.6167 2.6102 12 1 6.4970 -0.5175 1.4630 13 7 1.6524 2.0975 -1.2518 14 6 0.3811 2.6896 -1.3720 15 6 -0.5430 2.6833 -0.3428 16 6 -1.7092 3.2949 -0.6300 17 6 -2.8551 3.4245 0.2961 18 7 -2.9276 2.9585 1.5525 19 7 -4.0877 3.2822 2.0143 20 7 -4.7390 3.9167 1.1031 21 1 -5.6391 4.2658 1.1975 22 7 -4.0084 4.0160 0.0462 23 16 -1.6564 3.9220 -2.2722 24 6 -0.0260 3.3011 -2.4925 25 7 0.7791 3.4392 -3.7293 26 8 1.9050 2.9769 -3.7779 27 8 0.3132 4.0110 -4.6986 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 3.8293 -0.0604 2.9503 34 1 2.2719 2.1232 -1.9978 35 1 -0.3456 2.2249 0.6150 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604013180.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:46:58 Heat of formation + Delta-G solvation = 141.776966 kcal Electronic energy + Delta-G solvation = -24964.922363 eV Core-core repulsion = 21130.796202 eV Total energy + Delta-G solvation = -3834.126161 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.079 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -45.63196 -43.01538 -40.66374 -37.53139 -37.23313 -35.61388 -34.94551 -33.95958 -32.93043 -31.13230 -29.03258 -27.42768 -25.87999 -25.30262 -24.99977 -23.49616 -22.29753 -21.24088 -20.66640 -20.02421 -19.21884 -18.67299 -18.57150 -18.30674 -17.69169 -16.98504 -16.84681 -16.07634 -15.75921 -15.47799 -15.22428 -14.65628 -14.37873 -13.91713 -13.70945 -13.41442 -13.23963 -12.84293 -12.80767 -12.66365 -12.61595 -12.54237 -12.43292 -12.32515 -12.28714 -12.21234 -12.10807 -11.91354 -11.60521 -11.14238 -10.82976 -10.49247 -10.18534 -8.60915 -8.22380 -6.37276 -1.43733 -0.40372 -0.22108 0.06697 0.34083 0.74931 0.90470 1.23509 1.41559 1.45710 1.51528 1.55842 2.17878 2.37110 2.60162 3.07689 3.08366 3.50151 3.70578 3.99423 4.29219 4.34434 4.42462 4.48158 4.61452 4.70395 4.91636 5.18316 5.24600 5.28697 5.44215 5.51221 5.57611 5.75217 6.01424 6.15845 6.49743 6.63719 6.78421 6.92904 7.33248 8.82207 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.011358 B = 0.004770 C = 0.003574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2464.593491 B = 5868.414664 C = 7831.892269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.127 4.127 3 C 0.269 3.731 4 H 0.034 0.966 5 C -0.555 4.555 6 H 0.058 0.942 7 C 0.032 3.968 8 N -0.902 5.902 9 Si 0.959 3.041 10 H -0.272 1.272 11 H -0.279 1.279 12 H -0.277 1.277 13 N -0.665 5.665 14 C 0.301 3.699 15 C -0.135 4.135 16 C -0.041 4.041 17 C 0.225 3.775 18 N -0.273 5.273 19 N -0.044 5.044 20 N -0.186 5.186 21 H 0.500 0.500 22 N -0.271 5.271 23 S 0.306 5.694 24 C -0.317 4.317 25 N 0.099 4.901 26 O -0.235 6.235 27 O -0.189 6.189 28 H 0.054 0.946 29 H 0.057 0.943 30 H 0.044 0.956 31 H 0.032 0.968 32 H 0.085 0.915 33 H 0.269 0.731 34 H 0.412 0.588 35 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.931 6.279 -1.584 19.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.167 4.167 3 C 0.167 3.833 4 H 0.052 0.948 5 C -0.593 4.593 6 H 0.076 0.924 7 C -0.169 4.169 8 N -0.540 5.540 9 Si 0.785 3.215 10 H -0.197 1.197 11 H -0.204 1.204 12 H -0.203 1.203 13 N -0.291 5.291 14 C 0.171 3.829 15 C -0.175 4.175 16 C -0.164 4.164 17 C -0.056 4.056 18 N -0.146 5.146 19 N -0.039 5.039 20 N -0.038 5.038 21 H 0.361 0.639 22 N -0.125 5.125 23 S 0.565 5.435 24 C -0.530 4.530 25 N 0.597 4.403 26 O -0.428 6.428 27 O -0.398 6.398 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.063 0.937 31 H 0.051 0.949 32 H 0.103 0.897 33 H 0.078 0.922 34 H 0.253 0.747 35 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -19.347 6.697 -1.108 20.503 hybrid contribution 2.439 -0.690 0.134 2.538 sum -16.908 6.007 -0.974 17.970 Atomic orbital electron populations 1.22068 0.96337 1.01269 1.00509 1.21885 0.94459 0.98451 1.01866 1.18914 0.94496 0.89837 0.80102 0.94800 1.21448 0.91508 1.39664 1.06719 0.92390 1.25480 1.02492 0.94074 0.94897 1.69942 1.36626 1.37757 1.09641 0.85485 0.80100 0.77929 0.78024 1.19698 1.20425 1.20294 1.46528 1.11060 1.52746 1.18802 1.16896 0.87881 0.87735 0.90366 1.20086 0.91419 1.04491 1.01487 1.21282 0.93543 1.03482 0.98126 1.22061 0.92134 0.99791 0.91628 1.76313 1.10588 1.19655 1.07994 1.78959 0.99743 1.08596 1.16587 1.47795 1.17663 1.34125 1.04196 0.63930 1.74995 1.03308 1.21560 1.12675 1.84006 1.01624 1.55370 1.02493 1.25063 1.04281 1.32239 0.91384 1.42300 0.99801 0.97393 1.00789 1.94429 1.05311 1.53498 1.89518 1.94449 1.74799 1.43609 1.26900 0.92660 0.92379 0.93672 0.94891 0.89653 0.92182 0.74678 0.80816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.14 8.25 71.98 0.59 -4.55 16 2 C -0.13 -5.53 5.45 30.60 0.17 -5.36 16 3 C 0.27 12.28 2.21 44.24 0.10 12.38 16 4 H 0.03 1.65 6.76 -2.39 -0.02 1.63 16 5 C -0.56 -28.36 8.73 25.60 0.22 -28.14 16 6 H 0.06 3.00 7.74 -2.91 -0.02 2.98 16 7 C 0.03 1.65 5.29 84.65 0.45 2.09 16 8 N -0.90 -46.98 11.30 21.45 0.24 -46.74 16 9 Si 0.96 41.18 29.54 68.60 2.03 43.21 16 10 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 11 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 12 H -0.28 -11.67 7.11 99.48 0.71 -10.96 16 13 N -0.66 -27.35 5.16 -326.03 -1.68 -29.03 16 14 C 0.30 10.76 5.37 36.76 0.20 10.95 16 15 C -0.14 -4.28 6.82 21.50 0.15 -4.13 16 16 C -0.04 -1.09 6.44 24.04 0.15 -0.94 16 17 C 0.22 5.40 8.16 137.10 1.12 6.52 16 18 N -0.27 -7.01 12.51 -52.42 -0.66 -7.67 16 19 N -0.04 -0.85 13.47 37.02 0.50 -0.35 16 20 N -0.19 -2.24 7.90 37.02 0.29 -1.95 16 21 H 0.50 0.45 8.96 -347.51 -3.12 -2.66 16 22 N -0.27 -4.89 12.41 -52.37 -0.65 -5.54 16 23 S 0.31 7.80 23.10 -56.49 -1.31 6.49 16 24 C -0.32 -10.82 7.52 80.92 0.61 -10.21 16 25 N 0.10 3.76 4.46 -47.69 -0.21 3.55 16 26 O -0.24 -9.72 16.54 18.88 0.31 -9.41 16 27 O -0.19 -7.00 19.08 18.89 0.36 -6.64 16 28 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.06 2.01 6.42 -2.39 -0.02 1.99 16 30 H 0.04 1.53 5.39 -2.39 -0.01 1.52 16 31 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.09 4.14 5.95 -2.39 -0.01 4.13 16 33 H 0.27 13.31 8.31 -92.71 -0.77 12.54 16 34 H 0.41 17.63 5.88 -92.71 -0.55 17.08 16 35 H 0.17 5.84 4.61 -2.91 -0.01 5.83 16 Total: -1.00 -60.79 317.31 0.54 -60.25 By element: Atomic # 1 Polarization: 17.67 SS G_CDS: -2.44 Total: 15.22 kcal Atomic # 6 Polarization: -25.14 SS G_CDS: 3.76 Total: -21.39 kcal Atomic # 7 Polarization: -85.56 SS G_CDS: -2.17 Total: -87.73 kcal Atomic # 8 Polarization: -16.72 SS G_CDS: 0.67 Total: -16.05 kcal Atomic # 14 Polarization: 41.18 SS G_CDS: 2.03 Total: 43.21 kcal Atomic # 16 Polarization: 7.80 SS G_CDS: -1.31 Total: 6.49 kcal Total: -60.79 0.54 -60.25 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604013180.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 202.026 kcal (2) G-P(sol) polarization free energy of solvation -60.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 141.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.249 kcal (6) G-S(sol) free energy of system = (1) + (5) 141.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds