Wall clock time and date at job start Tue Mar 31 2020 13:47:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.46822 * 2 1 4 4 H 1.08998 * 109.47252 * 305.45536 * 3 2 1 5 5 C 1.50701 * 109.47187 * 185.44991 * 3 2 1 6 6 H 1.08001 * 119.99743 * 244.93106 * 5 3 2 7 7 C 1.37872 * 120.00081 * 64.92892 * 5 3 2 8 8 N 1.31521 * 119.99933 * 7.02565 * 7 5 3 9 9 Si 1.86800 * 120.00066 * 187.03131 * 7 5 3 10 10 H 1.48493 * 109.47466 * 84.99228 * 9 7 5 11 11 H 1.48507 * 109.46835 * 204.99188 * 9 7 5 12 12 H 1.48497 * 109.46960 * 324.98940 * 9 7 5 13 13 N 1.46506 * 109.46942 * 65.45402 * 3 2 1 14 14 C 1.40765 * 119.99726 * 274.99555 * 13 3 2 15 15 C 1.38329 * 122.54253 * 0.02871 * 14 13 3 16 16 C 1.34777 * 114.67276 * 179.97438 * 15 14 13 17 17 C 1.47906 * 125.21914 * 179.97438 * 16 15 14 18 18 N 1.34205 * 126.70205 * 359.68541 * 17 16 15 19 19 N 1.28980 * 107.25240 * 179.86998 * 18 17 16 20 20 N 1.28727 * 108.99263 * 0.39807 * 19 18 17 21 21 H 0.97000 * 125.31225 * 179.74517 * 20 19 18 22 22 N 1.28861 * 109.36510 * 359.74770 * 20 19 18 23 23 S 1.75863 * 109.56202 * 359.97438 * 16 15 14 24 24 C 1.33971 * 122.54180 * 179.73020 * 14 13 3 25 25 N 1.48233 * 125.11704 * 0.02934 * 24 14 13 26 26 O 1.21799 * 119.99767 * 359.97438 * 25 24 14 27 27 O 1.21792 * 119.99884 * 179.97438 * 25 24 14 28 28 H 1.08993 * 109.47668 * 299.99887 * 1 2 3 29 29 H 1.09001 * 109.47186 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.47434 * 60.00356 * 1 2 3 31 31 H 1.08994 * 109.47316 * 120.00057 * 2 1 3 32 32 H 1.09002 * 109.47165 * 240.00409 * 2 1 3 33 33 H 0.96998 * 119.99724 * 180.02562 * 8 7 5 34 34 H 0.96991 * 120.00382 * 94.99751 * 13 3 2 35 35 H 1.08005 * 122.66322 * 359.95015 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5990 1.9838 -0.8371 5 6 3.5408 1.4448 -0.1349 6 1 4.1550 1.8149 0.6727 7 6 4.1299 0.9744 -1.2893 8 7 3.3845 0.6533 -2.3243 9 14 5.9867 0.7928 -1.3833 10 1 6.3852 -0.5197 -0.8144 11 1 6.4203 0.8697 -2.8016 12 1 6.6306 1.8841 -0.6090 13 7 1.6616 2.0942 1.2565 14 6 0.3911 2.6859 1.3877 15 6 -0.5406 2.6823 0.3653 16 6 -1.7046 3.2932 0.6627 17 6 -2.8573 3.4252 -0.2546 18 7 -2.9348 2.9728 -1.5157 19 7 -4.1023 3.2881 -1.9642 20 7 -4.7470 3.9199 -1.0465 21 1 -5.6478 4.2690 -1.1332 22 7 -4.0088 4.0160 0.0053 23 16 -1.6425 3.9091 2.3088 24 6 -0.0095 3.2902 2.5143 25 7 0.8025 3.4197 3.7476 26 8 1.9279 2.9556 3.7873 27 8 0.3443 3.9901 4.7212 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 3.7990 0.3220 -3.1362 34 1 2.2865 2.1179 1.9978 35 1 -0.3502 2.2266 -0.5952 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604013181.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:47:01 Heat of formation + Delta-G solvation = 158.061115 kcal Electronic energy + Delta-G solvation = -24959.264432 eV Core-core repulsion = 21125.844405 eV Total energy + Delta-G solvation = -3833.420027 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.079 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -44.72875 -41.53241 -39.26454 -36.03856 -35.70744 -34.58324 -33.81931 -32.31098 -31.55834 -29.73785 -27.39167 -26.04774 -24.92484 -23.99145 -23.32539 -22.33801 -20.82535 -19.89452 -19.52736 -18.60790 -17.83370 -17.43440 -17.14897 -17.06960 -16.21066 -15.46067 -15.35126 -14.44907 -14.39993 -14.21805 -14.11479 -13.09809 -12.91773 -12.68625 -12.32932 -12.05105 -11.67782 -11.62782 -11.48473 -11.42444 -11.18531 -11.08366 -11.04815 -10.92680 -10.75598 -10.74859 -10.53992 -10.31515 -10.00011 -9.58596 -9.25885 -8.96341 -8.62616 -7.21868 -6.34011 -4.40886 -0.13980 0.82005 0.86587 1.29106 1.63197 1.92181 2.08257 2.15261 2.78582 3.18778 3.25142 3.25935 3.29586 3.91431 4.06312 4.26896 4.83241 4.89928 5.00490 5.08145 5.35388 5.59985 5.80836 5.93465 6.06106 6.09043 6.14646 6.57385 6.63788 6.76090 6.84433 6.98264 7.42396 7.46724 7.72114 7.80203 7.84195 8.11026 8.24871 8.64482 9.26313 10.73849 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.011355 B = 0.004784 C = 0.003575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2465.288562 B = 5851.675190 C = 7830.268326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.128 4.128 3 C 0.257 3.743 4 H 0.056 0.944 5 C -0.540 4.540 6 H 0.068 0.932 7 C 0.073 3.927 8 N -0.881 5.881 9 Si 0.903 3.097 10 H -0.276 1.276 11 H -0.285 1.285 12 H -0.272 1.272 13 N -0.651 5.651 14 C 0.303 3.697 15 C -0.111 4.111 16 C -0.065 4.065 17 C 0.245 3.755 18 N -0.244 5.244 19 N -0.043 5.043 20 N -0.224 5.224 21 H 0.477 0.523 22 N -0.284 5.284 23 S 0.235 5.765 24 C -0.301 4.301 25 N 0.100 4.900 26 O -0.199 6.199 27 O -0.199 6.199 28 H 0.040 0.960 29 H 0.041 0.959 30 H 0.055 0.945 31 H 0.045 0.955 32 H 0.094 0.906 33 H 0.268 0.732 34 H 0.417 0.583 35 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.588 4.727 1.956 16.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.167 4.167 3 C 0.156 3.844 4 H 0.073 0.927 5 C -0.578 4.578 6 H 0.086 0.914 7 C -0.131 4.131 8 N -0.518 5.518 9 Si 0.730 3.270 10 H -0.202 1.202 11 H -0.210 1.210 12 H -0.196 1.196 13 N -0.276 5.276 14 C 0.172 3.828 15 C -0.151 4.151 16 C -0.188 4.188 17 C -0.037 4.037 18 N -0.118 5.118 19 N -0.038 5.038 20 N -0.070 5.070 21 H 0.332 0.668 22 N -0.137 5.137 23 S 0.493 5.507 24 C -0.514 4.514 25 N 0.602 4.398 26 O -0.400 6.400 27 O -0.404 6.404 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.074 0.926 31 H 0.064 0.936 32 H 0.112 0.888 33 H 0.078 0.922 34 H 0.259 0.741 35 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -17.020 5.179 1.480 17.852 hybrid contribution 2.014 -0.630 -0.132 2.115 sum -15.006 4.548 1.349 15.738 Atomic orbital electron populations 1.22205 0.98737 1.00354 1.00226 1.21978 0.92418 0.99533 1.02747 1.19253 0.96253 0.89246 0.79683 0.92654 1.21079 0.89720 1.44389 1.02599 0.91425 1.24846 0.98987 0.94519 0.94796 1.69918 1.35787 1.42732 1.03316 0.86421 0.84287 0.78960 0.77350 1.20209 1.21033 1.19648 1.46801 1.09833 1.51262 1.19705 1.16731 0.88474 0.87986 0.89632 1.20319 0.90733 1.02025 1.02066 1.21143 0.93901 1.05940 0.97776 1.22241 0.91672 0.98328 0.91415 1.76304 1.08950 1.18836 1.07686 1.78992 1.00194 1.08404 1.16242 1.47706 1.17185 1.36349 1.05735 0.66782 1.75032 1.03931 1.22365 1.12356 1.84205 1.04865 1.57911 1.03726 1.24658 1.02422 1.32148 0.92212 1.42096 0.99775 0.97601 1.00295 1.94416 1.04459 1.51990 1.89112 1.94482 1.75548 1.44384 1.25947 0.94071 0.93956 0.92635 0.93643 0.88787 0.92216 0.74116 0.79979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.77 8.25 37.16 0.31 -2.46 16 2 C -0.13 -2.65 5.49 -26.73 -0.15 -2.79 16 3 C 0.26 5.65 2.08 -69.08 -0.14 5.51 16 4 H 0.06 1.30 6.73 -51.93 -0.35 0.95 16 5 C -0.54 -13.33 8.67 -34.44 -0.30 -13.63 16 6 H 0.07 1.68 7.73 -52.49 -0.41 1.27 16 7 C 0.07 1.83 5.19 -17.82 -0.09 1.73 16 8 N -0.88 -22.64 12.01 55.43 0.67 -21.97 16 9 Si 0.90 19.80 29.54 -169.99 -5.02 14.77 16 10 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 11 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 12 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 13 N -0.65 -12.94 5.17 -54.39 -0.28 -13.22 16 14 C 0.30 5.40 5.39 -85.22 -0.46 4.95 16 15 C -0.11 -1.79 6.81 -40.77 -0.28 -2.07 16 16 C -0.06 -0.93 6.44 -36.85 -0.24 -1.16 16 17 C 0.24 3.24 8.16 -156.25 -1.27 1.97 16 18 N -0.24 -3.38 12.51 32.08 0.40 -2.98 16 19 N -0.04 -0.47 13.46 60.35 0.81 0.34 16 20 N -0.22 -1.75 7.90 60.35 0.48 -1.28 16 21 H 0.48 1.20 8.96 -340.33 -3.05 -1.85 16 22 N -0.28 -3.06 12.41 32.10 0.40 -2.66 16 23 S 0.23 3.29 23.10 -107.50 -2.48 0.81 16 24 C -0.30 -5.27 7.52 -11.01 -0.08 -5.35 16 25 N 0.10 1.93 4.46 33.57 0.15 2.08 16 26 O -0.20 -4.02 16.54 -29.46 -0.49 -4.51 16 27 O -0.20 -3.80 19.08 -29.46 -0.56 -4.36 16 28 H 0.04 0.70 5.37 -51.93 -0.28 0.42 16 29 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.05 0.95 6.45 -51.93 -0.34 0.62 16 31 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.09 2.16 6.65 -51.93 -0.35 1.82 16 33 H 0.27 6.61 8.31 -40.82 -0.34 6.27 16 34 H 0.42 8.50 5.87 -40.82 -0.24 8.26 16 35 H 0.18 3.04 4.60 -52.48 -0.24 2.80 16 LS Contribution 318.47 15.07 4.80 4.80 Total: -1.00 -28.15 318.47 -9.07 -37.21 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: -5.23 Total: 4.28 kcal Atomic # 6 Polarization: -10.61 SS G_CDS: -2.71 Total: -13.32 kcal Atomic # 7 Polarization: -42.31 SS G_CDS: 2.62 Total: -39.68 kcal Atomic # 8 Polarization: -7.82 SS G_CDS: -1.05 Total: -8.87 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -5.02 Total: 14.77 kcal Atomic # 16 Polarization: 3.29 SS G_CDS: -2.48 Total: 0.81 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -28.15 -9.07 -37.21 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604013181.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 195.273 kcal (2) G-P(sol) polarization free energy of solvation -28.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 167.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.212 kcal (6) G-S(sol) free energy of system = (1) + (5) 158.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds