Wall clock time and date at job start Tue Mar 31 2020 13:47:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.46822 * 2 1 4 4 H 1.08998 * 109.47252 * 305.45536 * 3 2 1 5 5 C 1.50701 * 109.47187 * 185.44991 * 3 2 1 6 6 H 1.08001 * 119.99743 * 244.93106 * 5 3 2 7 7 C 1.37872 * 120.00081 * 64.92892 * 5 3 2 8 8 N 1.31521 * 119.99933 * 7.02565 * 7 5 3 9 9 Si 1.86800 * 120.00066 * 187.03131 * 7 5 3 10 10 H 1.48493 * 109.47466 * 84.99228 * 9 7 5 11 11 H 1.48507 * 109.46835 * 204.99188 * 9 7 5 12 12 H 1.48497 * 109.46960 * 324.98940 * 9 7 5 13 13 N 1.46506 * 109.46942 * 65.45402 * 3 2 1 14 14 C 1.40765 * 119.99726 * 274.99555 * 13 3 2 15 15 C 1.38329 * 122.54253 * 0.02871 * 14 13 3 16 16 C 1.34777 * 114.67276 * 179.97438 * 15 14 13 17 17 C 1.47906 * 125.21914 * 179.97438 * 16 15 14 18 18 N 1.34205 * 126.70205 * 359.68541 * 17 16 15 19 19 N 1.28980 * 107.25240 * 179.86998 * 18 17 16 20 20 N 1.28727 * 108.99263 * 0.39807 * 19 18 17 21 21 H 0.97000 * 125.31225 * 179.74517 * 20 19 18 22 22 N 1.28861 * 109.36510 * 359.74770 * 20 19 18 23 23 S 1.75863 * 109.56202 * 359.97438 * 16 15 14 24 24 C 1.33971 * 122.54180 * 179.73020 * 14 13 3 25 25 N 1.48233 * 125.11704 * 0.02934 * 24 14 13 26 26 O 1.21799 * 119.99767 * 359.97438 * 25 24 14 27 27 O 1.21792 * 119.99884 * 179.97438 * 25 24 14 28 28 H 1.08993 * 109.47668 * 299.99887 * 1 2 3 29 29 H 1.09001 * 109.47186 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.47434 * 60.00356 * 1 2 3 31 31 H 1.08994 * 109.47316 * 120.00057 * 2 1 3 32 32 H 1.09002 * 109.47165 * 240.00409 * 2 1 3 33 33 H 0.96998 * 119.99724 * 180.02562 * 8 7 5 34 34 H 0.96991 * 120.00382 * 94.99751 * 13 3 2 35 35 H 1.08005 * 122.66322 * 359.95015 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5990 1.9838 -0.8371 5 6 3.5408 1.4448 -0.1349 6 1 4.1550 1.8149 0.6727 7 6 4.1299 0.9744 -1.2893 8 7 3.3845 0.6533 -2.3243 9 14 5.9867 0.7928 -1.3833 10 1 6.3852 -0.5197 -0.8144 11 1 6.4203 0.8697 -2.8016 12 1 6.6306 1.8841 -0.6090 13 7 1.6616 2.0942 1.2565 14 6 0.3911 2.6859 1.3877 15 6 -0.5406 2.6823 0.3653 16 6 -1.7046 3.2932 0.6627 17 6 -2.8573 3.4252 -0.2546 18 7 -2.9348 2.9728 -1.5157 19 7 -4.1023 3.2881 -1.9642 20 7 -4.7470 3.9199 -1.0465 21 1 -5.6478 4.2690 -1.1332 22 7 -4.0088 4.0160 0.0053 23 16 -1.6425 3.9091 2.3088 24 6 -0.0095 3.2902 2.5143 25 7 0.8025 3.4197 3.7476 26 8 1.9279 2.9556 3.7873 27 8 0.3443 3.9901 4.7212 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 3.7990 0.3220 -3.1362 34 1 2.2865 2.1179 1.9978 35 1 -0.3502 2.2266 -0.5952 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604013181.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:47:01 Heat of formation + Delta-G solvation = 140.316131 kcal Electronic energy + Delta-G solvation = -24960.033912 eV Core-core repulsion = 21125.844405 eV Total energy + Delta-G solvation = -3834.189507 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.079 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -45.63198 -43.01626 -40.66188 -37.53159 -37.21794 -35.60844 -34.93689 -33.97905 -32.96367 -31.13596 -29.03423 -27.42566 -25.87970 -25.30358 -24.99081 -23.49700 -22.32628 -21.25109 -20.66662 -20.02479 -19.22414 -18.66472 -18.57053 -18.30632 -17.69075 -16.98489 -16.83734 -16.06850 -15.77829 -15.47673 -15.22294 -14.64747 -14.39328 -13.92997 -13.65999 -13.42512 -13.32206 -12.86453 -12.79336 -12.64121 -12.61635 -12.54921 -12.42635 -12.32998 -12.28530 -12.21701 -12.12375 -11.93308 -11.60844 -11.18790 -10.82106 -10.50294 -10.18634 -8.61367 -8.24534 -6.36512 -1.43567 -0.40309 -0.21945 0.06838 0.34150 0.74954 0.90585 1.23612 1.43098 1.45585 1.51524 1.53795 2.18046 2.37319 2.60068 3.07459 3.08441 3.50381 3.70544 3.99520 4.29298 4.33435 4.41523 4.45693 4.59374 4.69788 4.91933 5.17198 5.22871 5.27522 5.39630 5.51332 5.58092 5.70452 5.95408 6.12210 6.50372 6.64193 6.78677 6.93058 7.33091 8.82353 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.011355 B = 0.004784 C = 0.003575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2465.288562 B = 5851.675190 C = 7830.268326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.120 4.120 3 C 0.268 3.732 4 H 0.037 0.963 5 C -0.557 4.557 6 H 0.058 0.942 7 C 0.034 3.966 8 N -0.903 5.903 9 Si 0.956 3.044 10 H -0.273 1.273 11 H -0.281 1.281 12 H -0.273 1.273 13 N -0.665 5.665 14 C 0.301 3.699 15 C -0.135 4.135 16 C -0.041 4.041 17 C 0.225 3.775 18 N -0.273 5.273 19 N -0.044 5.044 20 N -0.186 5.186 21 H 0.500 0.500 22 N -0.271 5.271 23 S 0.307 5.693 24 C -0.317 4.317 25 N 0.098 4.902 26 O -0.234 6.234 27 O -0.189 6.189 28 H 0.047 0.953 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.038 0.962 32 H 0.068 0.932 33 H 0.269 0.731 34 H 0.412 0.588 35 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.996 5.599 2.183 18.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.160 4.160 3 C 0.166 3.834 4 H 0.055 0.945 5 C -0.595 4.595 6 H 0.077 0.923 7 C -0.168 4.168 8 N -0.540 5.540 9 Si 0.782 3.218 10 H -0.199 1.199 11 H -0.207 1.207 12 H -0.198 1.198 13 N -0.291 5.291 14 C 0.171 3.829 15 C -0.175 4.175 16 C -0.164 4.164 17 C -0.056 4.056 18 N -0.146 5.146 19 N -0.039 5.039 20 N -0.038 5.038 21 H 0.361 0.639 22 N -0.125 5.125 23 S 0.565 5.435 24 C -0.529 4.529 25 N 0.597 4.403 26 O -0.427 6.427 27 O -0.398 6.398 28 H 0.066 0.934 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.057 0.943 32 H 0.087 0.913 33 H 0.078 0.922 34 H 0.253 0.747 35 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -19.422 6.042 1.703 20.411 hybrid contribution 2.461 -0.735 -0.173 2.574 sum -16.961 5.307 1.530 17.838 Atomic orbital electron populations 1.22075 0.96105 1.01451 1.00668 1.21802 0.94735 0.98346 1.01073 1.18909 0.94650 0.89792 0.80072 0.94512 1.21386 0.91470 1.44262 1.02412 0.92349 1.25475 1.02363 0.94367 0.94599 1.70000 1.37013 1.43378 1.03607 0.85591 0.80228 0.78746 0.77247 1.19854 1.20662 1.19829 1.46513 1.10986 1.52874 1.18775 1.16890 0.87911 0.87758 0.90319 1.20089 0.91352 1.04478 1.01582 1.21283 0.93480 1.03486 0.98198 1.22065 0.92136 0.99979 0.91444 1.76312 1.10217 1.19864 1.08161 1.78959 0.99719 1.08754 1.16464 1.47796 1.17609 1.34098 1.04280 0.63930 1.74991 1.03208 1.21400 1.12928 1.84006 1.01274 1.55849 1.02338 1.25061 1.04107 1.32471 0.91290 1.42295 0.99811 0.97390 1.00775 1.94427 1.05325 1.53346 1.89592 1.94449 1.75269 1.43675 1.26370 0.93430 0.92445 0.92406 0.94277 0.91300 0.92194 0.74666 0.80850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.10 8.25 71.98 0.59 -4.50 16 2 C -0.12 -5.13 5.49 30.59 0.17 -4.96 16 3 C 0.27 12.22 2.08 44.25 0.09 12.31 16 4 H 0.04 1.81 6.73 -2.39 -0.02 1.79 16 5 C -0.56 -28.45 8.67 25.60 0.22 -28.23 16 6 H 0.06 3.01 7.73 -2.91 -0.02 2.99 16 7 C 0.03 1.74 5.19 84.65 0.44 2.18 16 8 N -0.90 -47.44 12.01 21.45 0.26 -47.19 16 9 Si 0.96 41.22 29.54 68.60 2.03 43.24 16 10 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 11 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 12 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 13 N -0.66 -27.26 5.17 -326.00 -1.69 -28.95 16 14 C 0.30 10.75 5.39 36.75 0.20 10.94 16 15 C -0.14 -4.30 6.81 21.50 0.15 -4.15 16 16 C -0.04 -1.10 6.44 24.04 0.15 -0.94 16 17 C 0.22 5.43 8.16 137.11 1.12 6.54 16 18 N -0.27 -7.06 12.51 -52.41 -0.66 -7.72 16 19 N -0.04 -0.86 13.46 37.02 0.50 -0.36 16 20 N -0.19 -2.26 7.90 37.02 0.29 -1.97 16 21 H 0.50 0.50 8.96 -347.51 -3.12 -2.62 16 22 N -0.27 -4.91 12.41 -52.36 -0.65 -5.56 16 23 S 0.31 7.80 23.10 -56.49 -1.31 6.49 16 24 C -0.32 -10.79 7.52 80.91 0.61 -10.18 16 25 N 0.10 3.74 4.46 -47.69 -0.21 3.53 16 26 O -0.23 -9.63 16.54 18.89 0.31 -9.32 16 27 O -0.19 -6.98 19.08 18.90 0.36 -6.62 16 28 H 0.05 1.59 5.37 -2.39 -0.01 1.58 16 29 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 30 H 0.06 1.99 6.45 -2.38 -0.02 1.97 16 31 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.07 3.27 6.65 -2.39 -0.02 3.26 16 33 H 0.27 13.49 8.31 -92.71 -0.77 12.72 16 34 H 0.41 17.51 5.87 -92.71 -0.54 16.97 16 35 H 0.17 5.88 4.60 -2.91 -0.01 5.86 16 Total: -1.00 -61.05 318.47 0.54 -60.51 By element: Atomic # 1 Polarization: 17.33 SS G_CDS: -2.44 Total: 14.88 kcal Atomic # 6 Polarization: -24.73 SS G_CDS: 3.74 Total: -20.98 kcal Atomic # 7 Polarization: -86.05 SS G_CDS: -2.16 Total: -88.21 kcal Atomic # 8 Polarization: -16.61 SS G_CDS: 0.67 Total: -15.94 kcal Atomic # 14 Polarization: 41.22 SS G_CDS: 2.03 Total: 43.24 kcal Atomic # 16 Polarization: 7.80 SS G_CDS: -1.31 Total: 6.49 kcal Total: -61.05 0.54 -60.51 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604013181.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 200.828 kcal (2) G-P(sol) polarization free energy of solvation -61.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 139.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.512 kcal (6) G-S(sol) free energy of system = (1) + (5) 140.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds