Wall clock time and date at job start Tue Mar 31 2020 13:37:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48508 * 109.47282 * 270.00037 * 3 2 1 5 5 H 1.48498 * 109.47211 * 30.00484 * 3 2 1 6 6 H 1.48506 * 109.46856 * 150.00664 * 3 2 1 7 7 C 1.37876 * 119.99563 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99652 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47291 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46886 * 179.97438 * 10 9 7 12 12 N 1.46499 * 109.46840 * 180.02562 * 11 10 9 13 13 C 1.40764 * 120.00025 * 179.97438 * 12 11 10 14 14 C 1.38323 * 122.53966 * 359.71990 * 13 12 11 15 15 C 1.34784 * 114.66954 * 179.75949 * 14 13 12 16 16 C 1.47914 * 125.21856 * 180.20615 * 15 14 13 17 17 N 1.34209 * 126.70000 * 359.97194 * 16 15 14 18 18 N 1.28977 * 107.24797 * 179.83765 * 17 16 15 19 19 N 1.28726 * 108.99961 * 0.42831 * 18 17 16 20 20 H 0.96995 * 125.32051 * 179.74323 * 19 18 17 21 21 N 1.28875 * 109.35749 * 359.73159 * 19 18 17 22 22 S 1.75864 * 109.56305 * 0.47352 * 15 14 13 23 23 C 1.33976 * 122.54539 * 179.97438 * 13 12 11 24 24 N 1.48235 * 125.11128 * 0.02998 * 23 13 12 25 25 O 1.21798 * 119.99924 * 359.97438 * 24 23 13 26 26 O 1.21795 * 119.99574 * 179.97438 * 24 23 13 27 27 H 0.97000 * 119.99425 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.46613 * 59.99978 * 9 7 2 29 29 H 1.09002 * 109.47120 * 300.00329 * 9 7 2 30 30 H 1.09001 * 109.46652 * 60.00253 * 10 9 7 31 31 H 1.08992 * 109.47514 * 300.00342 * 10 9 7 32 32 H 1.09002 * 109.47398 * 300.00496 * 11 10 9 33 33 H 1.09001 * 109.47194 * 60.00677 * 11 10 9 34 34 H 0.97000 * 120.00420 * 0.02562 * 12 11 10 35 35 H 1.07999 * 122.66391 * 359.97438 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 6 1.4801 -4.9871 -0.0012 12 7 2.4321 -6.1006 -0.0018 13 6 1.9628 -7.4278 -0.0008 14 6 0.6154 -7.7405 0.0064 15 6 0.3443 -9.0608 0.0011 16 6 -1.0109 -9.6533 0.0026 17 7 -2.1769 -8.9887 0.0098 18 7 -3.1191 -9.8694 0.0050 19 7 -2.5942 -11.0448 0.0042 20 1 -3.0881 -11.8795 0.0044 21 7 -1.3098 -10.9390 0.0028 22 16 1.8491 -9.9709 0.0000 23 6 2.7873 -8.4837 -0.0018 24 7 4.2678 -8.4095 -0.0034 25 8 4.8232 -7.3255 -0.0044 26 8 4.9288 -9.4325 -0.0038 27 1 -0.4849 0.8401 0.0004 28 1 0.6240 -2.5566 -0.8903 29 1 0.6246 -2.5571 0.8897 30 1 2.8725 -3.6048 0.8878 31 1 2.8712 -3.6040 -0.8921 32 1 0.8543 -5.0449 0.8894 33 1 0.8525 -5.0447 -0.8905 34 1 3.3858 -5.9235 -0.0021 35 1 -0.1579 -6.9866 0.0122 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001606347924.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:37:49 Heat of formation + Delta-G solvation = 148.739605 kcal Electronic energy + Delta-G solvation = -23463.437199 eV Core-core repulsion = 19629.612961 eV Total energy + Delta-G solvation = -3833.824238 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.079 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -45.01769 -41.97129 -39.46803 -36.47739 -35.91704 -34.85465 -34.15170 -33.11412 -31.45097 -30.31266 -27.20743 -26.23720 -25.22524 -24.44242 -23.09396 -22.73871 -20.70532 -20.52027 -19.87731 -19.11158 -18.11776 -17.72324 -17.50342 -17.18742 -16.41957 -16.08543 -15.20481 -15.14745 -14.70709 -14.53747 -14.45637 -13.98644 -13.33046 -12.74760 -12.39242 -12.35576 -12.02235 -11.91613 -11.77706 -11.60152 -11.52636 -11.49122 -11.18179 -11.14994 -10.95331 -10.81897 -10.61179 -10.20021 -9.83852 -9.57077 -9.43832 -9.20544 -8.42167 -7.88929 -6.07250 -4.10133 -0.60362 0.38155 0.52329 0.88531 1.13758 1.61776 1.68801 1.69381 2.29658 2.86291 3.27817 3.29240 3.35875 3.39610 3.73379 4.35870 4.40628 4.45501 4.71856 4.96250 5.15394 5.29175 5.30196 5.46908 5.49043 5.80165 5.86351 6.25250 6.41380 6.41436 6.81119 6.85696 7.37998 7.54501 7.55271 7.65026 7.70724 7.90687 8.31762 8.96107 9.54790 11.03974 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.011837 B = 0.002930 C = 0.002353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2364.909458 B = 9555.350954 C =11894.508847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.524 4.524 8 H 0.057 0.943 9 C 0.026 3.974 10 C -0.122 4.122 11 C 0.104 3.896 12 N -0.685 5.685 13 C 0.297 3.703 14 C -0.127 4.127 15 C -0.051 4.051 16 C 0.236 3.764 17 N -0.244 5.244 18 N -0.038 5.038 19 N -0.219 5.219 20 H 0.480 0.520 21 N -0.280 5.280 22 S 0.275 5.725 23 C -0.288 4.288 24 N 0.092 4.908 25 O -0.189 6.189 26 O -0.179 6.179 27 H 0.261 0.739 28 H 0.020 0.980 29 H 0.020 0.980 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.422 0.578 35 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.403 -25.717 0.012 26.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.562 4.562 8 H 0.075 0.925 9 C -0.012 4.012 10 C -0.160 4.160 11 C -0.019 4.019 12 N -0.317 5.317 13 C 0.170 3.830 14 C -0.167 4.167 15 C -0.175 4.175 16 C -0.045 4.045 17 N -0.118 5.118 18 N -0.033 5.033 19 N -0.066 5.066 20 H 0.335 0.665 21 N -0.133 5.133 22 S 0.536 5.464 23 C -0.500 4.500 24 N 0.599 4.401 25 O -0.392 6.392 26 O -0.389 6.389 27 H 0.071 0.929 28 H 0.038 0.962 29 H 0.038 0.962 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.265 0.735 35 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -5.511 -26.913 0.022 27.471 hybrid contribution 0.873 2.016 -0.014 2.197 sum -4.638 -24.897 0.008 25.325 Atomic orbital electron populations 1.69956 1.06054 1.26780 1.50527 1.25013 0.94869 0.99343 0.95140 0.86573 0.79865 0.83298 0.78169 1.20610 1.21190 1.19808 1.21190 0.93119 0.90824 1.51058 0.92518 1.19027 0.93703 0.90782 0.97651 1.21908 0.99947 0.92461 1.01714 1.22086 0.92186 0.85584 1.02021 1.46116 1.12046 1.00751 1.72743 1.16609 0.91144 0.85881 0.89323 1.19906 0.94898 0.95952 1.05993 1.21239 0.92551 0.96678 1.07003 1.22193 0.93178 0.85617 1.03518 1.76294 0.95479 1.23613 1.16392 1.79025 1.22230 0.87850 1.14176 1.47738 1.02607 1.10896 1.45350 0.66508 1.75029 0.96996 1.20143 1.21167 1.84479 0.88821 0.99163 1.73970 1.24943 0.84185 1.00281 1.40548 1.42147 1.00673 1.00336 0.96895 1.94427 1.71836 1.16583 1.56309 1.94530 1.63759 1.25042 1.55534 0.92892 0.96205 0.96188 0.92206 0.92198 0.91028 0.91021 0.73463 0.80531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.07 13.29 55.43 0.74 -25.33 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.27 -6.39 7.11 56.52 0.40 -5.98 16 7 C -0.52 -14.25 9.11 -34.44 -0.31 -14.56 16 8 H 0.06 1.51 7.74 -52.48 -0.41 1.10 16 9 C 0.03 0.62 4.97 -27.88 -0.14 0.48 16 10 C -0.12 -2.25 5.27 -26.73 -0.14 -2.39 16 11 C 0.10 1.52 5.12 -4.04 -0.02 1.50 16 12 N -0.69 -9.44 5.73 -59.75 -0.34 -9.78 16 13 C 0.30 3.77 6.58 -85.22 -0.56 3.21 16 14 C -0.13 -1.39 9.34 -40.77 -0.38 -1.77 16 15 C -0.05 -0.52 6.44 -36.85 -0.24 -0.76 16 16 C 0.24 2.33 8.16 -156.25 -1.27 1.05 16 17 N -0.24 -2.62 12.51 32.08 0.40 -2.21 16 18 N -0.04 -0.32 13.46 60.35 0.81 0.49 16 19 N -0.22 -1.18 7.90 60.35 0.48 -0.70 16 20 H 0.48 0.14 8.96 -340.33 -3.05 -2.91 16 21 N -0.28 -2.22 12.41 32.10 0.40 -1.82 16 22 S 0.28 2.77 23.10 -107.50 -2.48 0.29 16 23 C -0.29 -3.76 7.52 -11.01 -0.08 -3.85 16 24 N 0.09 1.40 4.46 33.57 0.15 1.55 16 25 O -0.19 -3.04 16.54 -29.46 -0.49 -3.52 16 26 O -0.18 -2.79 19.08 -29.46 -0.56 -3.35 16 27 H 0.26 7.21 8.31 -40.82 -0.34 6.88 16 28 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.07 1.00 8.12 -51.93 -0.42 0.58 16 33 H 0.07 1.00 8.13 -51.93 -0.42 0.58 16 34 H 0.42 6.09 5.81 -40.82 -0.24 5.85 16 35 H 0.18 1.80 7.37 -52.49 -0.39 1.41 16 LS Contribution 334.33 15.07 5.04 5.04 Total: -1.00 -32.35 334.33 -9.88 -42.23 By element: Atomic # 1 Polarization: 2.23 SS G_CDS: -5.75 Total: -3.52 kcal Atomic # 6 Polarization: -12.33 SS G_CDS: -3.25 Total: -15.58 kcal Atomic # 7 Polarization: -40.44 SS G_CDS: 2.63 Total: -37.81 kcal Atomic # 8 Polarization: -5.82 SS G_CDS: -1.05 Total: -6.87 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Atomic # 16 Polarization: 2.77 SS G_CDS: -2.48 Total: 0.29 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -32.35 -9.88 -42.23 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606347924.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 190.970 kcal (2) G-P(sol) polarization free energy of solvation -32.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 158.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.230 kcal (6) G-S(sol) free energy of system = (1) + (5) 148.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds