Wall clock time and date at job start Tue Mar 31 2020 13:37:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48508 * 109.47282 * 270.00037 * 3 2 1 5 5 H 1.48498 * 109.47211 * 30.00484 * 3 2 1 6 6 H 1.48506 * 109.46856 * 150.00664 * 3 2 1 7 7 C 1.37876 * 119.99563 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99652 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47291 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46886 * 179.97438 * 10 9 7 12 12 N 1.46499 * 109.46840 * 180.02562 * 11 10 9 13 13 C 1.40764 * 120.00025 * 179.97438 * 12 11 10 14 14 C 1.38323 * 122.53966 * 359.71990 * 13 12 11 15 15 C 1.34784 * 114.66954 * 179.75949 * 14 13 12 16 16 C 1.47914 * 125.21856 * 180.20615 * 15 14 13 17 17 N 1.34209 * 126.70000 * 359.97194 * 16 15 14 18 18 N 1.28977 * 107.24797 * 179.83765 * 17 16 15 19 19 N 1.28726 * 108.99961 * 0.42831 * 18 17 16 20 20 H 0.96995 * 125.32051 * 179.74323 * 19 18 17 21 21 N 1.28875 * 109.35749 * 359.73159 * 19 18 17 22 22 S 1.75864 * 109.56305 * 0.47352 * 15 14 13 23 23 C 1.33976 * 122.54539 * 179.97438 * 13 12 11 24 24 N 1.48235 * 125.11128 * 0.02998 * 23 13 12 25 25 O 1.21798 * 119.99924 * 359.97438 * 24 23 13 26 26 O 1.21795 * 119.99574 * 179.97438 * 24 23 13 27 27 H 0.97000 * 119.99425 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.46613 * 59.99978 * 9 7 2 29 29 H 1.09002 * 109.47120 * 300.00329 * 9 7 2 30 30 H 1.09001 * 109.46652 * 60.00253 * 10 9 7 31 31 H 1.08992 * 109.47514 * 300.00342 * 10 9 7 32 32 H 1.09002 * 109.47398 * 300.00496 * 11 10 9 33 33 H 1.09001 * 109.47194 * 60.00677 * 11 10 9 34 34 H 0.97000 * 120.00420 * 0.02562 * 12 11 10 35 35 H 1.07999 * 122.66391 * 359.97438 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 6 1.4801 -4.9871 -0.0012 12 7 2.4321 -6.1006 -0.0018 13 6 1.9628 -7.4278 -0.0008 14 6 0.6154 -7.7405 0.0064 15 6 0.3443 -9.0608 0.0011 16 6 -1.0109 -9.6533 0.0026 17 7 -2.1769 -8.9887 0.0098 18 7 -3.1191 -9.8694 0.0050 19 7 -2.5942 -11.0448 0.0042 20 1 -3.0881 -11.8795 0.0044 21 7 -1.3098 -10.9390 0.0028 22 16 1.8491 -9.9709 0.0000 23 6 2.7873 -8.4837 -0.0018 24 7 4.2678 -8.4095 -0.0034 25 8 4.8232 -7.3255 -0.0044 26 8 4.9288 -9.4325 -0.0038 27 1 -0.4849 0.8401 0.0004 28 1 0.6240 -2.5566 -0.8903 29 1 0.6246 -2.5571 0.8897 30 1 2.8725 -3.6048 0.8878 31 1 2.8712 -3.6040 -0.8921 32 1 0.8543 -5.0449 0.8894 33 1 0.8525 -5.0447 -0.8905 34 1 3.3858 -5.9235 -0.0021 35 1 -0.1579 -6.9866 0.0122 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001606347924.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:37:48 Heat of formation + Delta-G solvation = 127.581816 kcal Electronic energy + Delta-G solvation = -23464.354670 eV Core-core repulsion = 19629.612961 eV Total energy + Delta-G solvation = -3834.741709 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.079 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -45.67246 -43.09812 -40.45743 -37.62246 -37.13478 -35.74112 -35.22121 -34.52921 -32.84129 -31.52239 -28.62149 -27.46147 -25.95265 -25.52841 -24.59425 -23.61917 -22.12874 -21.63965 -20.73440 -20.09271 -19.08609 -18.65140 -18.55999 -18.34753 -18.02492 -17.04808 -16.57828 -16.47556 -16.11715 -15.60144 -15.27788 -15.09435 -14.48589 -14.05139 -13.75908 -13.75602 -13.44153 -12.85749 -12.74696 -12.63814 -12.59357 -12.56558 -12.44117 -12.42560 -12.36483 -12.35055 -12.13041 -11.72030 -11.47679 -11.19677 -10.95233 -10.53559 -10.32639 -8.86060 -8.19501 -6.29183 -1.55246 -0.52638 -0.29122 0.01563 0.22570 0.62647 0.81831 1.18903 1.41747 1.42062 1.42312 1.53298 1.99246 2.35655 2.43417 3.02493 3.14821 3.37992 3.58966 3.93922 4.01459 4.18220 4.24393 4.31954 4.51893 4.63020 4.89093 4.91782 5.14653 5.18519 5.46825 5.51140 5.64907 5.72920 5.85664 6.24127 6.25937 6.51692 6.87282 6.88818 7.39952 8.91932 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.011837 B = 0.002930 C = 0.002353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2364.909458 B = 9555.350954 C =11894.508847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.003 3.997 3 Si 0.959 3.041 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.266 1.266 7 C -0.544 4.544 8 H 0.058 0.942 9 C 0.029 3.971 10 C -0.109 4.109 11 C 0.118 3.882 12 N -0.690 5.690 13 C 0.299 3.701 14 C -0.139 4.139 15 C -0.036 4.036 16 C 0.221 3.779 17 N -0.270 5.270 18 N -0.044 5.044 19 N -0.186 5.186 20 H 0.500 0.500 21 N -0.273 5.273 22 S 0.325 5.675 23 C -0.305 4.305 24 N 0.092 4.908 25 O -0.218 6.218 26 O -0.189 6.189 27 H 0.264 0.736 28 H 0.002 0.998 29 H 0.002 0.998 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.419 0.581 35 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.869 -27.260 0.007 27.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.195 4.195 3 Si 0.784 3.216 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.190 1.190 7 C -0.582 4.582 8 H 0.076 0.924 9 C -0.009 4.009 10 C -0.147 4.147 11 C -0.005 4.005 12 N -0.321 5.321 13 C 0.172 3.828 14 C -0.178 4.178 15 C -0.159 4.159 16 C -0.060 4.060 17 N -0.144 5.144 18 N -0.039 5.039 19 N -0.038 5.038 20 H 0.361 0.639 21 N -0.127 5.127 22 S 0.586 5.414 23 C -0.516 4.516 24 N 0.594 4.406 25 O -0.415 6.415 26 O -0.397 6.397 27 H 0.072 0.928 28 H 0.020 0.980 29 H 0.020 0.980 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.098 0.902 33 H 0.098 0.902 34 H 0.261 0.739 35 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -5.952 -28.469 0.016 29.084 hybrid contribution 0.876 2.288 -0.013 2.450 sum -5.077 -26.180 0.003 26.668 Atomic orbital electron populations 1.70071 1.07544 1.27728 1.51609 1.25883 0.95734 1.03049 0.94846 0.85535 0.78717 0.78926 0.78413 1.19923 1.20806 1.19005 1.21680 0.93557 0.92455 1.50538 0.92360 1.18901 0.94160 0.92036 0.95794 1.21617 0.98795 0.92627 1.01689 1.21793 0.91681 0.84097 1.02953 1.45930 1.11609 1.01120 1.73468 1.16733 0.91784 0.85118 0.89131 1.19875 0.94109 0.96582 1.07265 1.21336 0.93104 0.96542 1.04958 1.22126 0.92867 0.86151 1.04835 1.76287 0.95963 1.24722 1.17386 1.78984 1.21878 0.88454 1.14564 1.47822 1.01977 1.11277 1.42731 0.63928 1.74999 0.97931 1.19210 1.20594 1.84368 0.87442 0.96822 1.72784 1.25237 0.82943 1.02203 1.41254 1.42373 1.01597 1.00020 0.96613 1.94420 1.72675 1.16773 1.57610 1.94504 1.64548 1.24967 1.55683 0.92768 0.98006 0.97985 0.92242 0.92216 0.90160 0.90159 0.73854 0.79904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.90 13.29 21.45 0.28 -54.61 16 2 C 0.00 0.17 5.46 84.65 0.46 0.63 16 3 Si 0.96 43.60 29.54 68.60 2.03 45.63 16 4 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 5 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 6 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 7 C -0.54 -29.91 9.11 25.60 0.23 -29.68 16 8 H 0.06 3.10 7.74 -2.91 -0.02 3.08 16 9 C 0.03 1.40 4.97 29.85 0.15 1.55 16 10 C -0.11 -4.04 5.27 30.59 0.16 -3.88 16 11 C 0.12 3.39 5.12 86.38 0.44 3.83 16 12 N -0.69 -18.68 5.73 -342.96 -1.96 -20.64 16 13 C 0.30 7.30 6.58 36.75 0.24 7.54 16 14 C -0.14 -2.85 9.34 21.50 0.20 -2.65 16 15 C -0.04 -0.66 6.44 24.04 0.15 -0.50 16 16 C 0.22 3.90 8.16 137.11 1.12 5.02 16 17 N -0.27 -5.35 12.51 -52.41 -0.66 -6.01 16 18 N -0.04 -0.66 13.46 37.02 0.50 -0.16 16 19 N -0.19 -1.49 7.90 37.02 0.29 -1.20 16 20 H 0.50 -1.26 8.96 -347.51 -3.11 -4.37 16 21 N -0.27 -3.59 12.41 -52.36 -0.65 -4.24 16 22 S 0.33 5.90 23.10 -56.49 -1.31 4.59 16 23 C -0.30 -7.66 7.52 80.91 0.61 -7.05 16 24 N 0.09 2.78 4.46 -47.69 -0.21 2.57 16 25 O -0.22 -7.09 16.54 18.89 0.31 -6.78 16 26 O -0.19 -5.78 19.08 18.89 0.36 -5.42 16 27 H 0.26 14.68 8.31 -92.71 -0.77 13.91 16 28 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 29 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 30 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 31 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 32 H 0.08 2.19 8.12 -2.39 -0.02 2.17 16 33 H 0.08 2.19 8.13 -2.39 -0.02 2.17 16 34 H 0.42 12.08 5.81 -92.71 -0.54 11.54 16 35 H 0.18 3.52 7.37 -2.91 -0.02 3.50 16 Total: -1.00 -69.46 334.33 0.30 -69.17 By element: Atomic # 1 Polarization: 4.73 SS G_CDS: -2.46 Total: 2.27 kcal Atomic # 6 Polarization: -28.95 SS G_CDS: 3.77 Total: -25.17 kcal Atomic # 7 Polarization: -81.88 SS G_CDS: -2.41 Total: -84.28 kcal Atomic # 8 Polarization: -12.87 SS G_CDS: 0.67 Total: -12.20 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Atomic # 16 Polarization: 5.90 SS G_CDS: -1.31 Total: 4.59 kcal Total: -69.46 0.30 -69.17 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606347924.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 196.750 kcal (2) G-P(sol) polarization free energy of solvation -69.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.168 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds