Wall clock time and date at job start Tue Mar 31 2020 14:03:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35635 * 117.00152 * 2 1 4 4 C 1.40282 * 120.15371 * 270.22504 * 3 2 1 5 5 C 1.47369 * 120.20364 * 0.02562 * 4 3 2 6 6 O 1.21510 * 120.00219 * 322.92479 * 5 4 3 7 7 N 1.34775 * 119.99955 * 142.92323 * 5 4 3 8 8 C 1.33310 * 120.00300 * 187.16853 * 7 5 4 9 9 H 1.07994 * 120.00516 * 136.14406 * 8 7 5 10 10 C 1.46792 * 119.99758 * 316.15055 * 8 7 5 11 11 N 1.29315 * 119.99825 * 339.40116 * 10 8 7 12 12 Si 1.86793 * 120.00298 * 159.40479 * 10 8 7 13 13 H 1.48500 * 109.47363 * 89.99844 * 12 10 8 14 14 H 1.48498 * 109.47376 * 209.99848 * 12 10 8 15 15 H 1.48497 * 109.47019 * 329.99883 * 12 10 8 16 16 C 1.46501 * 120.00264 * 7.16638 * 7 5 4 17 17 C 1.50701 * 109.47002 * 100.67011 * 16 7 5 18 18 O 1.20822 * 120.00096 * 0.02562 * 17 16 7 19 19 O 1.34233 * 119.99885 * 180.02562 * 17 16 7 20 20 C 1.39775 * 119.59741 * 180.25684 * 4 3 2 21 21 C 1.37779 * 119.89613 * 359.76682 * 20 4 3 22 22 C 1.38547 * 120.31470 * 0.02562 * 21 20 4 23 23 C 1.38089 * 120.41055 * 359.97438 * 22 21 20 24 24 N 1.48016 * 119.95585 * 179.97438 * 23 22 21 25 25 O 1.31702 * 119.99717 * 0.02562 * 24 23 22 26 26 O 1.31698 * 120.00613 * 179.72213 * 24 23 22 27 27 H 1.09002 * 109.46731 * 60.00234 * 1 2 3 28 28 H 1.08998 * 109.47265 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46905 * 300.00340 * 1 2 3 30 30 H 0.97000 * 120.00222 * 185.05276 * 11 10 8 31 31 H 1.09005 * 109.47186 * 220.67181 * 16 7 5 32 32 H 1.09004 * 109.46714 * 340.67392 * 16 7 5 33 33 H 0.96694 * 117.00186 * 179.97438 * 19 17 16 34 34 H 1.07995 * 120.05167 * 179.79529 * 20 4 3 35 35 H 1.08001 * 119.84569 * 179.97438 * 21 20 4 36 36 H 1.08002 * 119.79084 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2085 0.0000 4 6 2.3605 1.8385 -1.2130 5 6 2.0246 1.1916 -2.4938 6 8 2.1212 -0.0141 -2.6093 7 7 1.6102 1.9374 -3.5371 8 6 1.1705 1.3447 -4.6473 9 1 0.2791 1.7080 -5.1368 10 6 1.8981 0.1980 -5.2045 11 7 3.1370 0.0031 -4.8890 12 14 1.0346 -0.9797 -6.3692 13 1 1.2064 -0.5085 -7.7669 14 1 1.6231 -2.3358 -6.2283 15 1 -0.4121 -1.0311 -6.0385 16 6 1.6427 3.3995 -3.4512 17 6 2.8551 3.9187 -4.1805 18 8 3.6138 3.1466 -4.7173 19 8 3.0921 5.2388 -4.2336 20 6 3.0000 3.0813 -1.1994 21 6 3.3111 3.6805 0.0016 22 6 2.9936 3.0567 1.1973 23 6 2.3618 1.8288 1.1989 24 7 2.0278 1.1712 2.4821 25 8 2.3327 1.7574 3.6214 26 8 1.4204 0.0026 2.4848 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 3.6389 -0.7106 -5.3128 31 1 0.7414 3.8104 -3.9062 32 1 1.6915 3.7010 -2.4048 33 1 3.8823 5.5241 -4.7124 34 1 3.2494 3.5714 -2.1289 35 1 3.8056 4.6406 0.0111 36 1 3.2417 3.5339 2.1339 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001607007022.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:03:02 Heat of formation + Delta-G solvation = -50.842203 kcal Electronic energy + Delta-G solvation = -28723.862739 eV Core-core repulsion = 24374.045611 eV Total energy + Delta-G solvation = -4349.817128 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.093 amu Computer time = 2.04 seconds Orbital eigenvalues (eV) -40.90889 -39.78456 -38.57416 -37.81585 -37.30133 -35.59151 -34.37199 -34.14800 -32.71978 -31.54722 -30.60226 -28.12015 -27.10101 -26.18622 -25.15299 -22.96814 -22.19398 -21.50973 -20.05308 -18.60667 -18.00252 -17.61639 -17.60421 -16.83543 -16.31260 -16.09982 -16.06027 -15.76460 -15.58146 -15.06619 -14.88952 -14.64590 -14.14919 -13.70066 -13.30425 -13.18943 -12.84303 -12.52878 -12.44266 -12.12327 -11.75564 -11.43764 -11.32278 -11.16733 -11.06530 -10.97142 -10.89378 -10.86195 -10.49882 -10.37803 -9.97054 -9.89170 -9.45295 -9.06874 -8.98030 -8.44832 -7.61925 -6.41117 -3.96432 -0.56330 0.73033 1.11049 1.26234 2.73131 2.95001 3.15175 3.24055 3.26162 3.35939 3.61242 4.01446 4.19335 4.34939 4.59118 4.69773 4.78248 4.93464 4.96123 5.05297 5.34190 5.42729 5.44905 5.57783 5.66873 5.74881 5.78629 5.82688 5.91270 6.01112 6.06366 6.29090 6.93160 6.94456 7.24405 7.44205 7.84335 8.43192 8.56615 8.89539 9.21190 9.97167 10.58762 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.013865 B = 0.005559 C = 0.004236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2018.939955 B = 5035.694278 C = 6608.044847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.052 3.948 2 O -0.298 6.298 3 C 0.206 3.794 4 C -0.117 4.117 5 C 0.488 3.512 6 O -0.493 6.493 7 N -0.394 5.394 8 C -0.392 4.392 9 H 0.090 0.910 10 C 0.087 3.913 11 N -0.752 5.752 12 Si 0.915 3.085 13 H -0.279 1.279 14 H -0.281 1.281 15 H -0.264 1.264 16 C 0.083 3.917 17 C 0.433 3.567 18 O -0.455 6.455 19 O -0.536 6.536 20 C -0.058 4.058 21 C -0.125 4.125 22 C -0.053 4.053 23 C -0.035 4.035 24 N -0.010 5.010 25 O -0.198 6.198 26 O -0.148 6.148 27 H 0.052 0.948 28 H 0.103 0.897 29 H 0.041 0.959 30 H 0.275 0.725 31 H 0.104 0.896 32 H 0.107 0.893 33 H 0.398 0.602 34 H 0.146 0.854 35 H 0.151 0.849 36 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.980 10.706 5.331 12.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 O -0.213 6.213 3 C 0.158 3.842 4 C -0.123 4.123 5 C 0.277 3.723 6 O -0.369 6.369 7 N -0.113 5.113 8 C -0.519 4.519 9 H 0.107 0.893 10 C -0.137 4.137 11 N -0.377 5.377 12 Si 0.741 3.259 13 H -0.205 1.205 14 H -0.206 1.206 15 H -0.188 1.188 16 C -0.042 4.042 17 C 0.270 3.730 18 O -0.337 6.337 19 O -0.349 6.349 20 C -0.077 4.077 21 C -0.144 4.144 22 C -0.073 4.073 23 C -0.122 4.122 24 N 0.467 4.533 25 O -0.385 6.385 26 O -0.347 6.347 27 H 0.071 0.929 28 H 0.122 0.878 29 H 0.060 0.940 30 H 0.087 0.913 31 H 0.122 0.878 32 H 0.124 0.876 33 H 0.256 0.744 34 H 0.163 0.837 35 H 0.169 0.831 36 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -1.645 9.636 4.822 10.900 hybrid contribution 0.326 -0.183 -0.610 0.715 sum -1.319 9.453 4.212 10.433 Atomic orbital electron populations 1.22956 0.76783 1.04416 0.99932 1.86045 1.20729 1.20998 1.93565 1.18401 0.92359 0.84952 0.88486 1.21173 1.00674 0.94773 0.95647 1.17324 0.86287 0.87277 0.81423 1.90693 1.51619 1.13171 1.81400 1.41814 1.56631 1.00417 1.12432 1.19752 1.09730 1.16358 1.06020 0.89255 1.26900 0.93624 0.98095 0.95083 1.68896 1.08417 1.26659 1.33771 0.86183 0.80621 0.79804 0.79321 1.20468 1.20590 1.18810 1.21952 0.94371 0.87553 1.00371 1.24753 0.88446 0.79522 0.80265 1.90881 1.45784 1.56808 1.40209 1.84597 1.49734 1.27687 1.72858 1.22094 0.92728 0.93478 0.99449 1.21104 1.01483 1.01430 0.90350 1.20992 0.94299 0.91087 1.00949 1.20831 1.13391 0.97093 0.80913 1.50256 0.97655 1.01729 1.03625 1.96230 1.59482 1.66288 1.16484 1.96303 1.39914 1.02285 1.96204 0.92909 0.87835 0.93988 0.91343 0.87833 0.87603 0.74441 0.83651 0.83104 0.82636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 48. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.86 10.37 101.05 1.05 1.91 16 2 O -0.30 -6.07 7.45 -48.07 -0.36 -6.42 16 3 C 0.21 3.90 5.69 -38.66 -0.22 3.68 16 4 C -0.12 -2.25 5.42 -104.84 -0.57 -2.82 16 5 C 0.49 11.58 6.69 -12.55 -0.08 11.50 16 6 O -0.49 -13.82 13.40 -11.70 -0.16 -13.98 16 7 N -0.39 -8.92 2.09 -115.78 -0.24 -9.16 16 8 C -0.39 -9.81 8.95 -13.45 -0.12 -9.93 16 9 H 0.09 2.12 8.01 -52.49 -0.42 1.70 16 10 C 0.09 2.29 4.45 -15.15 -0.07 2.22 16 11 N -0.75 -21.06 11.72 56.00 0.66 -20.40 16 12 Si 0.92 20.34 29.69 -169.99 -5.05 15.30 16 13 H -0.28 -5.99 7.11 56.52 0.40 -5.58 16 14 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 15 H -0.26 -5.74 7.11 56.52 0.40 -5.33 16 16 C 0.08 1.41 5.45 -5.19 -0.03 1.38 16 17 C 0.43 7.53 6.38 36.01 0.23 7.76 16 18 O -0.46 -10.25 16.87 -18.75 -0.32 -10.57 16 19 O -0.54 -6.74 13.42 -39.26 -0.53 -7.27 16 20 C -0.06 -0.87 7.36 -39.17 -0.29 -1.16 16 21 C -0.12 -1.44 10.02 -39.64 -0.40 -1.83 16 22 C -0.05 -0.68 9.57 -39.52 -0.38 -1.06 16 23 C -0.03 -0.57 6.89 -79.85 -0.55 -1.13 16 24 N -0.01 -0.18 4.98 34.01 0.17 -0.02 16 25 O -0.20 -3.45 19.14 -31.57 -0.60 -4.05 16 26 O -0.15 -2.83 16.59 -39.22 -0.65 -3.48 16 27 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.10 1.52 8.14 -51.93 -0.42 1.09 16 29 H 0.04 0.62 7.44 -51.93 -0.39 0.23 16 30 H 0.27 7.31 8.27 -40.82 -0.34 6.97 16 31 H 0.10 1.54 8.11 -51.93 -0.42 1.12 16 32 H 0.11 1.51 4.25 -51.93 -0.22 1.29 16 33 H 0.40 3.48 9.10 45.56 0.41 3.89 16 34 H 0.15 2.17 3.97 -52.49 -0.21 1.96 16 35 H 0.15 1.12 8.06 -52.49 -0.42 0.70 16 36 H 0.16 1.60 7.56 -52.49 -0.40 1.20 16 LS Contribution 324.96 15.07 4.90 4.90 Total: -1.00 -35.25 324.96 -5.64 -40.89 By element: Atomic # 1 Polarization: 5.77 SS G_CDS: -2.04 Total: 3.73 kcal Atomic # 6 Polarization: 11.95 SS G_CDS: -1.42 Total: 10.53 kcal Atomic # 7 Polarization: -30.16 SS G_CDS: 0.58 Total: -29.58 kcal Atomic # 8 Polarization: -43.15 SS G_CDS: -2.61 Total: -45.76 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.05 Total: 15.30 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -35.25 -5.64 -40.89 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001607007022.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.954 kcal (2) G-P(sol) polarization free energy of solvation -35.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.04 seconds