Wall clock time and date at job start Tue Mar 31 2020 13:40:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38262 * 120.00098 * 2 1 4 4 C 1.38204 * 120.00535 * 179.97438 * 3 2 1 5 5 C 1.38254 * 119.99816 * 0.13864 * 4 3 2 6 6 C 1.38220 * 120.00044 * 359.83750 * 5 4 3 7 7 C 1.50702 * 120.00039 * 180.36613 * 6 5 4 8 8 H 1.08993 * 109.47064 * 214.72604 * 7 6 5 9 9 O 1.45197 * 109.47092 * 334.72988 * 7 6 5 10 10 C 1.34226 * 116.99763 * 209.99539 * 9 7 6 11 11 O 1.20826 * 120.00394 * 0.02562 * 10 9 7 12 12 C 1.50708 * 120.00238 * 179.97438 * 10 9 7 13 13 S 1.80999 * 109.47345 * 180.02562 * 12 10 9 14 14 C 1.76202 * 99.99870 * 180.02562 * 13 12 10 15 15 H 1.07997 * 119.99941 * 359.97438 * 14 13 12 16 16 C 1.38791 * 120.00053 * 180.02562 * 14 13 12 17 17 N 1.31634 * 119.99848 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00283 * 179.97438 * 16 14 13 19 19 H 1.48494 * 109.46829 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.47107 * 119.99908 * 18 16 14 21 21 H 1.48501 * 109.47145 * 239.99958 * 18 16 14 22 22 C 1.50702 * 109.46725 * 94.72484 * 7 6 5 23 23 O 1.20821 * 120.00429 * 244.99630 * 22 7 6 24 24 O 1.34234 * 119.99631 * 65.00122 * 22 7 6 25 25 C 1.38207 * 120.00352 * 180.02562 * 2 1 3 26 26 C 1.50701 * 119.99822 * 359.97438 * 25 2 1 27 27 H 1.08996 * 109.47441 * 269.97566 * 1 2 3 28 28 H 1.09003 * 109.47255 * 29.97979 * 1 2 3 29 29 H 1.09001 * 109.46747 * 149.97368 * 1 2 3 30 30 H 1.08013 * 119.99532 * 0.02562 * 3 2 1 31 31 H 1.07997 * 120.00478 * 180.02562 * 4 3 2 32 32 H 1.08002 * 120.00345 * 179.97438 * 5 4 3 33 33 H 1.08996 * 109.47077 * 300.00665 * 12 10 9 34 34 H 1.09001 * 109.46982 * 60.00102 * 12 10 9 35 35 H 0.97000 * 119.99915 * 179.97438 * 17 16 14 36 36 H 0.96702 * 116.99670 * 179.97438 * 24 22 7 37 37 H 1.09002 * 109.46961 * 269.97690 * 26 25 2 38 38 H 1.08993 * 109.47341 * 29.98219 * 26 25 2 39 39 H 1.09001 * 109.46864 * 149.98303 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5803 1.1975 0.0005 5 6 4.2717 0.0002 -0.0018 6 6 3.5806 -1.1969 -0.0013 7 6 4.3342 -2.5019 0.0044 8 1 3.7865 -3.2403 -0.5811 9 8 5.6503 -2.3035 -0.5759 10 6 6.2008 -3.3506 -1.2100 11 8 5.6027 -4.3982 -1.2783 12 6 7.5646 -3.2193 -1.8378 13 16 8.0269 -4.7896 -2.6102 14 6 9.6142 -4.3626 -3.2450 15 1 10.0065 -3.3678 -3.0939 16 6 10.3600 -5.3045 -3.9400 17 7 9.8817 -6.5169 -4.1245 18 14 12.0425 -4.8517 -4.6135 19 1 12.3479 -3.4389 -4.2734 20 1 13.0712 -5.7385 -4.0129 21 1 12.0461 -5.0181 -6.0892 22 6 4.4791 -2.9920 1.4222 23 8 5.5748 -3.0711 1.9251 24 8 3.3907 -3.3407 2.1262 25 6 2.1981 -1.1969 -0.0005 26 6 1.4446 -2.5020 -0.0005 27 1 -0.3634 -0.0004 1.0276 28 1 -0.3634 0.8902 -0.5135 29 1 -0.3633 -0.8898 -0.5143 30 1 1.6582 2.1328 0.0004 31 1 4.1203 2.1328 0.0010 32 1 5.3517 0.0002 -0.0018 33 1 7.5423 -2.4352 -2.5945 34 1 8.2948 -2.9628 -1.0702 35 1 10.4027 -7.1751 -4.6105 36 1 3.5337 -3.6494 3.0314 37 1 1.2637 -2.8171 1.0272 38 1 0.4919 -2.3715 -0.5136 39 1 2.0334 -3.2614 -0.5150 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001607844960.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:40:10 Heat of formation + Delta-G solvation = -153.691306 kcal Electronic energy + Delta-G solvation = -24648.616744 eV Core-core repulsion = 20840.632959 eV Total energy + Delta-G solvation = -3807.983785 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.091 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.24863 -39.70599 -39.63398 -36.61508 -36.06655 -33.63230 -33.43273 -32.49426 -30.08256 -28.58241 -27.35224 -26.52033 -25.56508 -22.98540 -21.78208 -21.03127 -20.34745 -18.41949 -18.05056 -17.52446 -17.17252 -16.83712 -15.96683 -15.76404 -15.46988 -15.32399 -14.85378 -14.54401 -14.36181 -14.13259 -13.57246 -13.37338 -13.21579 -13.03065 -12.86590 -12.71646 -12.56090 -12.45635 -12.06449 -11.90154 -11.74426 -11.43370 -11.18493 -11.10055 -11.09779 -11.05742 -10.82259 -10.53576 -10.19677 -9.91086 -9.13116 -8.95783 -8.77150 -8.38413 -6.61914 -6.28374 -4.01195 0.94705 1.13827 1.97996 2.11867 2.49546 2.93315 3.19731 3.22727 3.28835 3.41414 3.56365 4.13142 4.18516 4.51288 4.56953 4.70781 4.77563 4.85969 4.98956 5.06489 5.07806 5.09978 5.26044 5.35660 5.45102 5.48766 5.51385 5.60881 5.63764 5.74276 5.80262 6.02686 6.04553 6.18823 6.25391 6.27030 6.35599 6.46121 6.73397 7.55179 7.64624 7.96792 8.29897 9.17367 10.79243 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.021275 B = 0.002796 C = 0.002678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.787445 B =10012.262043 C =10452.765017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.093 4.093 3 C -0.105 4.105 4 C -0.126 4.126 5 C -0.086 4.086 6 C -0.096 4.096 7 C 0.142 3.858 8 H 0.134 0.866 9 O -0.327 6.327 10 C 0.483 3.517 11 O -0.483 6.483 12 C -0.126 4.126 13 S -0.056 6.056 14 C -0.535 4.535 15 H 0.077 0.923 16 C 0.074 3.926 17 N -0.867 5.867 18 Si 0.922 3.078 19 H -0.270 1.270 20 H -0.279 1.279 21 H -0.279 1.279 22 C 0.474 3.526 23 O -0.491 6.491 24 O -0.506 6.506 25 C -0.054 4.054 26 C -0.127 4.127 27 H 0.070 0.930 28 H 0.065 0.935 29 H 0.072 0.928 30 H 0.124 0.876 31 H 0.127 0.873 32 H 0.135 0.865 33 H 0.106 0.894 34 H 0.107 0.893 35 H 0.269 0.731 36 H 0.412 0.588 37 H 0.086 0.914 38 H 0.073 0.927 39 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.169 14.263 10.506 26.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.093 4.093 3 C -0.123 4.123 4 C -0.144 4.144 5 C -0.104 4.104 6 C -0.096 4.096 7 C 0.085 3.915 8 H 0.151 0.849 9 O -0.244 6.244 10 C 0.325 3.675 11 O -0.368 6.368 12 C -0.274 4.274 13 S 0.170 5.830 14 C -0.683 4.683 15 H 0.096 0.904 16 C -0.135 4.135 17 N -0.502 5.502 18 Si 0.749 3.251 19 H -0.195 1.195 20 H -0.205 1.205 21 H -0.205 1.205 22 C 0.314 3.686 23 O -0.377 6.377 24 O -0.319 6.319 25 C -0.054 4.054 26 C -0.183 4.183 27 H 0.089 0.911 28 H 0.084 0.916 29 H 0.091 0.909 30 H 0.142 0.858 31 H 0.145 0.855 32 H 0.153 0.847 33 H 0.125 0.875 34 H 0.125 0.875 35 H 0.079 0.921 36 H 0.272 0.728 37 H 0.105 0.895 38 H 0.092 0.908 39 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -19.666 12.892 10.102 25.593 hybrid contribution 1.958 1.143 0.304 2.288 sum -17.708 14.035 10.406 24.876 Atomic orbital electron populations 1.20843 0.90891 1.03017 1.02426 1.19674 0.96134 0.92175 1.01287 1.21111 0.94299 0.97488 0.99391 1.21124 0.94226 0.97958 1.01063 1.21092 1.00943 0.91288 0.97053 1.18967 0.92624 0.92136 1.05871 1.20520 0.84275 0.97810 0.88871 0.84923 1.86693 1.31230 1.41389 1.65128 1.23571 0.88165 0.81134 0.74661 1.90669 1.61976 1.28374 1.55765 1.23323 0.91389 1.09115 1.03576 1.85422 1.22278 1.06695 1.68590 1.22877 1.02697 1.01357 1.41359 0.90446 1.25009 0.98854 0.94402 0.95279 1.70021 1.37815 1.03509 1.38896 0.86054 0.81815 0.78711 0.78569 1.19469 1.20498 1.20491 1.23382 0.82281 0.74087 0.88854 1.90779 1.27579 1.49057 1.70300 1.84495 1.37988 1.77676 1.31723 1.19481 0.91816 0.95742 0.98372 1.21032 1.00104 0.93650 1.03530 0.91095 0.91565 0.90933 0.85835 0.85547 0.84741 0.87549 0.87457 0.92103 0.72837 0.89548 0.90784 0.91326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.72 9.60 36.00 0.35 -0.37 16 2 C -0.09 -0.83 5.88 -104.63 -0.62 -1.45 16 3 C -0.10 -0.91 9.70 -39.59 -0.38 -1.30 16 4 C -0.13 -1.21 10.05 -39.59 -0.40 -1.60 16 5 C -0.09 -1.01 9.36 -39.58 -0.37 -1.38 16 6 C -0.10 -1.17 5.04 -104.62 -0.53 -1.70 16 7 C 0.14 2.04 2.20 -29.03 -0.06 1.98 16 8 H 0.13 1.88 5.17 -51.93 -0.27 1.61 16 9 O -0.33 -5.49 8.26 -45.89 -0.38 -5.87 16 10 C 0.48 9.56 7.94 36.01 0.29 9.85 16 11 O -0.48 -10.63 15.08 -18.75 -0.28 -10.91 16 12 C -0.13 -2.63 6.27 36.01 0.23 -2.40 16 13 S -0.06 -1.51 20.58 -107.50 -2.21 -3.72 16 14 C -0.53 -15.06 9.50 30.94 0.29 -14.76 16 15 H 0.08 2.07 7.80 -52.49 -0.41 1.66 16 16 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 17 N -0.87 -25.81 13.22 55.49 0.73 -25.07 16 18 Si 0.92 21.24 29.55 -169.99 -5.02 16.22 16 19 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 20 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 21 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 22 C 0.47 6.78 7.61 36.01 0.27 7.05 16 23 O -0.49 -8.73 17.27 -25.39 -0.44 -9.17 16 24 O -0.51 -5.02 11.72 -39.27 -0.46 -5.48 16 25 C -0.05 -0.56 5.88 -104.63 -0.62 -1.18 16 26 C -0.13 -1.10 8.45 36.01 0.30 -0.79 16 27 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.07 0.34 8.09 -51.93 -0.42 -0.08 16 29 H 0.07 0.41 5.95 -51.93 -0.31 0.10 16 30 H 0.12 0.78 8.06 -52.48 -0.42 0.35 16 31 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 32 H 0.13 1.61 7.34 -52.49 -0.39 1.23 16 33 H 0.11 2.00 8.14 -51.92 -0.42 1.58 16 34 H 0.11 2.12 8.14 -51.92 -0.42 1.70 16 35 H 0.27 7.41 8.31 -40.82 -0.34 7.08 16 36 H 0.41 2.32 9.10 45.56 0.41 2.73 16 37 H 0.09 0.68 7.24 -51.93 -0.38 0.31 16 38 H 0.07 0.51 5.95 -51.93 -0.31 0.20 16 39 H 0.07 0.65 6.03 -51.93 -0.31 0.34 16 LS Contribution 351.49 15.07 5.30 5.30 Total: -1.00 -35.26 351.49 -7.73 -42.99 By element: Atomic # 1 Polarization: 5.41 SS G_CDS: -3.62 Total: 1.79 kcal Atomic # 6 Polarization: -4.73 SS G_CDS: -1.34 Total: -6.07 kcal Atomic # 7 Polarization: -25.81 SS G_CDS: 0.73 Total: -25.07 kcal Atomic # 8 Polarization: -29.88 SS G_CDS: -1.56 Total: -31.44 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Atomic # 16 Polarization: -1.51 SS G_CDS: -2.21 Total: -3.72 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -35.26 -7.73 -42.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001607844960.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.701 kcal (2) G-P(sol) polarization free energy of solvation -35.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds