Wall clock time and date at job start Tue Mar 31 2020 13:40:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38262 * 120.00098 * 2 1 4 4 C 1.38204 * 120.00535 * 179.97438 * 3 2 1 5 5 C 1.38254 * 119.99816 * 0.13864 * 4 3 2 6 6 C 1.38220 * 120.00044 * 359.83750 * 5 4 3 7 7 C 1.50702 * 120.00039 * 180.36613 * 6 5 4 8 8 H 1.08993 * 109.47064 * 214.72604 * 7 6 5 9 9 O 1.45197 * 109.47092 * 334.72988 * 7 6 5 10 10 C 1.34226 * 116.99763 * 209.99539 * 9 7 6 11 11 O 1.20826 * 120.00394 * 0.02562 * 10 9 7 12 12 C 1.50708 * 120.00238 * 179.97438 * 10 9 7 13 13 S 1.80999 * 109.47345 * 180.02562 * 12 10 9 14 14 C 1.76202 * 99.99870 * 180.02562 * 13 12 10 15 15 H 1.07997 * 119.99941 * 359.97438 * 14 13 12 16 16 C 1.38791 * 120.00053 * 180.02562 * 14 13 12 17 17 N 1.31634 * 119.99848 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00283 * 179.97438 * 16 14 13 19 19 H 1.48494 * 109.46829 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.47107 * 119.99908 * 18 16 14 21 21 H 1.48501 * 109.47145 * 239.99958 * 18 16 14 22 22 C 1.50702 * 109.46725 * 94.72484 * 7 6 5 23 23 O 1.20821 * 120.00429 * 244.99630 * 22 7 6 24 24 O 1.34234 * 119.99631 * 65.00122 * 22 7 6 25 25 C 1.38207 * 120.00352 * 180.02562 * 2 1 3 26 26 C 1.50701 * 119.99822 * 359.97438 * 25 2 1 27 27 H 1.08996 * 109.47441 * 269.97566 * 1 2 3 28 28 H 1.09003 * 109.47255 * 29.97979 * 1 2 3 29 29 H 1.09001 * 109.46747 * 149.97368 * 1 2 3 30 30 H 1.08013 * 119.99532 * 0.02562 * 3 2 1 31 31 H 1.07997 * 120.00478 * 180.02562 * 4 3 2 32 32 H 1.08002 * 120.00345 * 179.97438 * 5 4 3 33 33 H 1.08996 * 109.47077 * 300.00665 * 12 10 9 34 34 H 1.09001 * 109.46982 * 60.00102 * 12 10 9 35 35 H 0.97000 * 119.99915 * 179.97438 * 17 16 14 36 36 H 0.96702 * 116.99670 * 179.97438 * 24 22 7 37 37 H 1.09002 * 109.46961 * 269.97690 * 26 25 2 38 38 H 1.08993 * 109.47341 * 29.98219 * 26 25 2 39 39 H 1.09001 * 109.46864 * 149.98303 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5803 1.1975 0.0005 5 6 4.2717 0.0002 -0.0018 6 6 3.5806 -1.1969 -0.0013 7 6 4.3342 -2.5019 0.0044 8 1 3.7865 -3.2403 -0.5811 9 8 5.6503 -2.3035 -0.5759 10 6 6.2008 -3.3506 -1.2100 11 8 5.6027 -4.3982 -1.2783 12 6 7.5646 -3.2193 -1.8378 13 16 8.0269 -4.7896 -2.6102 14 6 9.6142 -4.3626 -3.2450 15 1 10.0065 -3.3678 -3.0939 16 6 10.3600 -5.3045 -3.9400 17 7 9.8817 -6.5169 -4.1245 18 14 12.0425 -4.8517 -4.6135 19 1 12.3479 -3.4389 -4.2734 20 1 13.0712 -5.7385 -4.0129 21 1 12.0461 -5.0181 -6.0892 22 6 4.4791 -2.9920 1.4222 23 8 5.5748 -3.0711 1.9251 24 8 3.3907 -3.3407 2.1262 25 6 2.1981 -1.1969 -0.0005 26 6 1.4446 -2.5020 -0.0005 27 1 -0.3634 -0.0004 1.0276 28 1 -0.3634 0.8902 -0.5135 29 1 -0.3633 -0.8898 -0.5143 30 1 1.6582 2.1328 0.0004 31 1 4.1203 2.1328 0.0010 32 1 5.3517 0.0002 -0.0018 33 1 7.5423 -2.4352 -2.5945 34 1 8.2948 -2.9628 -1.0702 35 1 10.4027 -7.1751 -4.6105 36 1 3.5337 -3.6494 3.0314 37 1 1.2637 -2.8171 1.0272 38 1 0.4919 -2.3715 -0.5136 39 1 2.0334 -3.2614 -0.5150 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001607844960.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:40:09 Heat of formation + Delta-G solvation = -174.828066 kcal Electronic energy + Delta-G solvation = -24649.533303 eV Core-core repulsion = 20840.632959 eV Total energy + Delta-G solvation = -3808.900344 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.091 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.46596 -41.02344 -40.49214 -37.95976 -37.22847 -34.63122 -34.34919 -34.32523 -31.59361 -29.59518 -28.14992 -27.72222 -27.19526 -24.10989 -22.93796 -21.82157 -21.46301 -20.01823 -19.45744 -18.96178 -18.49760 -17.91338 -16.99274 -16.95030 -16.89501 -16.57192 -16.54192 -16.01000 -15.33076 -15.09920 -14.76872 -14.63700 -14.47535 -14.00833 -13.92668 -13.76284 -13.46053 -13.43033 -13.20582 -12.96047 -12.91593 -12.79733 -12.74178 -12.67584 -12.56557 -12.00534 -11.88578 -11.79124 -11.76363 -11.64789 -11.19136 -10.43077 -9.75203 -9.49619 -8.76916 -8.39545 -6.19766 0.13535 0.38981 0.69743 0.83561 0.94732 1.36109 1.41483 1.51015 1.60199 1.96451 2.21508 2.72172 2.95785 3.16028 3.25024 3.52643 3.61800 3.87051 3.94906 4.04589 4.09589 4.12792 4.26974 4.36084 4.45180 4.67207 4.77464 4.78190 4.86031 4.93091 4.97076 5.00378 5.19532 5.32209 5.39897 5.41437 5.49014 5.52151 5.65231 6.02381 6.16707 6.39783 6.71791 7.02308 8.70088 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.021275 B = 0.002796 C = 0.002678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.787445 B =10012.262043 C =10452.765017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.094 4.094 3 C -0.103 4.103 4 C -0.128 4.128 5 C -0.108 4.108 6 C -0.115 4.115 7 C 0.137 3.863 8 H 0.133 0.867 9 O -0.321 6.321 10 C 0.490 3.510 11 O -0.511 6.511 12 C -0.108 4.108 13 S -0.131 6.131 14 C -0.548 4.548 15 H 0.086 0.914 16 C 0.016 3.984 17 N -0.909 5.909 18 Si 1.001 2.999 19 H -0.257 1.257 20 H -0.274 1.274 21 H -0.272 1.272 22 C 0.480 3.520 23 O -0.534 6.534 24 O -0.487 6.487 25 C -0.062 4.062 26 C -0.127 4.127 27 H 0.082 0.918 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.153 0.847 31 H 0.147 0.853 32 H 0.122 0.878 33 H 0.129 0.871 34 H 0.120 0.880 35 H 0.273 0.727 36 H 0.433 0.567 37 H 0.094 0.906 38 H 0.094 0.906 39 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.316 16.596 10.797 28.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.094 4.094 3 C -0.120 4.120 4 C -0.145 4.145 5 C -0.126 4.126 6 C -0.115 4.115 7 C 0.081 3.919 8 H 0.150 0.850 9 O -0.238 6.238 10 C 0.333 3.667 11 O -0.398 6.398 12 C -0.256 4.256 13 S 0.096 5.904 14 C -0.695 4.695 15 H 0.104 0.896 16 C -0.189 4.189 17 N -0.546 5.546 18 Si 0.823 3.177 19 H -0.181 1.181 20 H -0.199 1.199 21 H -0.197 1.197 22 C 0.322 3.678 23 O -0.423 6.423 24 O -0.301 6.301 25 C -0.062 4.062 26 C -0.183 4.183 27 H 0.101 0.899 28 H 0.099 0.901 29 H 0.096 0.904 30 H 0.171 0.829 31 H 0.164 0.836 32 H 0.140 0.860 33 H 0.147 0.853 34 H 0.138 0.862 35 H 0.082 0.918 36 H 0.296 0.704 37 H 0.112 0.888 38 H 0.112 0.888 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -20.855 15.241 10.425 27.855 hybrid contribution 2.107 0.512 0.324 2.192 sum -18.749 15.752 10.749 26.743 Atomic orbital electron populations 1.20916 0.88639 1.04067 1.03462 1.20068 0.97776 0.91645 0.99915 1.21506 0.94012 0.98699 0.97813 1.21385 0.94985 0.97862 1.00309 1.21141 1.00631 0.92202 0.98641 1.18954 0.93408 0.90995 1.08165 1.20803 0.82734 0.99504 0.88887 0.85006 1.86639 1.32748 1.39771 1.64623 1.23264 0.87776 0.81216 0.74488 1.90654 1.62681 1.29535 1.56959 1.23111 0.92459 1.05846 1.04156 1.85507 1.23127 1.11976 1.69784 1.23218 1.02868 1.01919 1.41535 0.89557 1.26128 1.03310 0.94131 0.95338 1.70166 1.39739 1.04819 1.39842 0.84866 0.75994 0.78970 0.77884 1.18079 1.19926 1.19680 1.23374 0.82310 0.73170 0.88978 1.90763 1.29163 1.51142 1.71272 1.84441 1.35849 1.76770 1.33077 1.19698 0.91078 0.97134 0.98309 1.21074 1.00592 0.92535 1.04074 0.89919 0.90111 0.90363 0.82909 0.83550 0.85981 0.85277 0.86217 0.91782 0.70364 0.88798 0.88772 0.92734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.02 9.60 71.23 0.68 -0.34 16 2 C -0.09 -1.45 5.88 -19.87 -0.12 -1.56 16 3 C -0.10 -1.49 9.70 22.27 0.22 -1.27 16 4 C -0.13 -2.23 10.05 22.27 0.22 -2.00 16 5 C -0.11 -2.51 9.36 22.27 0.21 -2.30 16 6 C -0.11 -2.79 5.04 -19.86 -0.10 -2.89 16 7 C 0.14 4.01 2.20 29.10 0.06 4.07 16 8 H 0.13 3.85 5.17 -2.39 -0.01 3.84 16 9 O -0.32 -11.02 8.26 -45.03 -0.37 -11.40 16 10 C 0.49 19.82 7.94 71.24 0.57 20.39 16 11 O -0.51 -23.25 15.08 21.96 0.33 -22.92 16 12 C -0.11 -4.52 6.27 71.24 0.45 -4.07 16 13 S -0.13 -7.22 20.58 -56.49 -1.16 -8.38 16 14 C -0.55 -31.10 9.50 67.95 0.65 -30.45 16 15 H 0.09 4.57 7.80 -2.91 -0.02 4.55 16 16 C 0.02 0.91 5.49 84.85 0.47 1.37 16 17 N -0.91 -55.12 13.22 21.65 0.29 -54.83 16 18 Si 1.00 43.38 29.55 68.60 2.03 45.41 16 19 H -0.26 -10.47 7.11 99.48 0.71 -9.77 16 20 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 21 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 22 C 0.48 13.83 7.61 71.24 0.54 14.37 16 23 O -0.53 -19.39 17.27 28.33 0.49 -18.90 16 24 O -0.49 -9.22 11.72 -51.46 -0.60 -9.82 16 25 C -0.06 -1.20 5.88 -19.87 -0.12 -1.32 16 26 C -0.13 -2.01 8.45 71.24 0.60 -1.41 16 27 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 28 H 0.08 0.52 8.09 -2.39 -0.02 0.50 16 29 H 0.08 0.62 5.95 -2.39 -0.01 0.61 16 30 H 0.15 1.29 8.06 -2.90 -0.02 1.27 16 31 H 0.15 1.86 8.06 -2.91 -0.02 1.84 16 32 H 0.12 3.01 7.34 -2.91 -0.02 2.99 16 33 H 0.13 4.81 8.14 -2.40 -0.02 4.79 16 34 H 0.12 4.74 8.14 -2.39 -0.02 4.72 16 35 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 36 H 0.43 4.27 9.10 -74.06 -0.67 3.60 16 37 H 0.09 1.32 7.24 -2.39 -0.02 1.30 16 38 H 0.09 1.08 5.95 -2.39 -0.01 1.06 16 39 H 0.05 1.02 6.03 -2.39 -0.01 1.00 16 Total: -1.00 -78.10 351.49 5.76 -72.34 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: 0.43 Total: 15.90 kcal Atomic # 6 Polarization: -11.74 SS G_CDS: 4.33 Total: -7.41 kcal Atomic # 7 Polarization: -55.12 SS G_CDS: 0.29 Total: -54.83 kcal Atomic # 8 Polarization: -62.88 SS G_CDS: -0.15 Total: -63.03 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.41 kcal Atomic # 16 Polarization: -7.22 SS G_CDS: -1.16 Total: -8.38 kcal Total: -78.10 5.76 -72.34 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001607844960.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.490 kcal (2) G-P(sol) polarization free energy of solvation -78.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds