Wall clock time and date at job start Tue Mar 31 2020 13:40:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38262 * 119.99657 * 2 1 4 4 C 1.38208 * 119.99554 * 179.97438 * 3 2 1 5 5 C 1.38255 * 120.00357 * 359.97438 * 4 3 2 6 6 C 1.38220 * 119.99681 * 359.97438 * 5 4 3 7 7 C 1.50706 * 119.99654 * 180.02562 * 6 5 4 8 8 H 1.08996 * 109.46538 * 145.00372 * 7 6 5 9 9 O 1.45196 * 109.47199 * 25.00580 * 7 6 5 10 10 C 1.34229 * 117.00136 * 149.99976 * 9 7 6 11 11 O 1.20828 * 119.99815 * 359.97438 * 10 9 7 12 12 C 1.50696 * 120.00173 * 179.97438 * 10 9 7 13 13 S 1.81000 * 109.47330 * 179.97438 * 12 10 9 14 14 C 1.76202 * 99.99942 * 179.97438 * 13 12 10 15 15 H 1.07990 * 120.00288 * 0.02562 * 14 13 12 16 16 C 1.38804 * 119.99415 * 179.97438 * 14 13 12 17 17 N 1.31624 * 120.00627 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99640 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47115 * 89.99910 * 18 16 14 20 20 H 1.48495 * 109.47078 * 210.00096 * 18 16 14 21 21 H 1.48505 * 109.46954 * 330.00173 * 18 16 14 22 22 C 1.50698 * 109.47218 * 265.00027 * 7 6 5 23 23 O 1.20823 * 119.99694 * 115.00426 * 22 7 6 24 24 O 1.34227 * 120.00337 * 295.00394 * 22 7 6 25 25 C 1.38205 * 119.99888 * 179.97438 * 2 1 3 26 26 C 1.50700 * 120.00223 * 359.97438 * 25 2 1 27 27 H 1.08997 * 109.46659 * 90.00566 * 1 2 3 28 28 H 1.08994 * 109.46968 * 210.00315 * 1 2 3 29 29 H 1.08994 * 109.47161 * 330.00621 * 1 2 3 30 30 H 1.07992 * 119.99989 * 359.97273 * 3 2 1 31 31 H 1.08000 * 120.00313 * 179.97438 * 4 3 2 32 32 H 1.08000 * 120.00604 * 179.70652 * 5 4 3 33 33 H 1.09004 * 109.47261 * 300.00115 * 12 10 9 34 34 H 1.09006 * 109.47300 * 59.99669 * 12 10 9 35 35 H 0.96997 * 120.00498 * 179.97438 * 17 16 14 36 36 H 0.96694 * 117.00568 * 179.97438 * 24 22 7 37 37 H 1.09003 * 109.47247 * 89.99725 * 26 25 2 38 38 H 1.09001 * 109.47092 * 209.99946 * 26 25 2 39 39 H 1.09003 * 109.47158 * 329.99680 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1974 0.0005 5 6 4.2717 0.0001 0.0016 6 6 3.5806 -1.1969 0.0027 7 6 4.3342 -2.5020 0.0044 8 1 3.7866 -3.2369 0.5944 9 8 5.6504 -2.3002 0.5834 10 6 6.2010 -3.3435 1.2236 11 8 5.6028 -4.3907 1.2982 12 6 7.5653 -3.2089 1.8494 13 16 8.0277 -4.7744 2.6313 14 6 9.6157 -4.3441 3.2620 15 1 10.0082 -3.3505 3.1044 16 6 10.3616 -5.2821 3.9623 17 7 9.8830 -6.4931 4.1549 18 14 12.0449 -4.8258 4.6316 19 1 11.9003 -4.2812 6.0056 20 1 12.9079 -6.0337 4.6663 21 1 12.6645 -3.7996 3.7551 22 6 4.4787 -3.0006 -1.4103 23 8 5.5744 -3.0826 -1.9129 24 8 3.3903 -3.3534 -2.1121 25 6 2.1981 -1.1969 0.0005 26 6 1.4446 -2.5020 0.0017 27 1 -0.3632 -0.0001 -1.0277 28 1 -0.3633 -0.8899 0.5139 29 1 -0.3633 0.8900 0.5137 30 1 1.6583 2.1326 -0.0004 31 1 4.1205 2.1327 0.0001 32 1 5.3517 0.0000 -0.0028 33 1 8.2949 -2.9574 1.0796 34 1 7.5440 -2.4200 2.6013 35 1 10.4044 -7.1486 4.6440 36 1 3.5330 -3.6668 -3.0157 37 1 1.2625 -2.8174 -1.0257 38 1 2.0339 -3.2613 0.5158 39 1 0.4924 -2.3714 0.5159 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001607844961.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:40:12 Heat of formation + Delta-G solvation = -153.649777 kcal Electronic energy + Delta-G solvation = -24648.843639 eV Core-core repulsion = 20840.861654 eV Total energy + Delta-G solvation = -3807.981985 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.091 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.24857 -39.70569 -39.63396 -36.61509 -36.06626 -33.63137 -33.43243 -32.49390 -30.08268 -28.58134 -27.35321 -26.52012 -25.56276 -22.98513 -21.78195 -21.03091 -20.34754 -18.41976 -18.04964 -17.52451 -17.17151 -16.83736 -15.96602 -15.76370 -15.46964 -15.32456 -14.85188 -14.54211 -14.36189 -14.13147 -13.57196 -13.37321 -13.21563 -13.03010 -12.86500 -12.71538 -12.55985 -12.45532 -12.06654 -11.89933 -11.74390 -11.43319 -11.18452 -11.11621 -11.07631 -11.05729 -10.82804 -10.53550 -10.19673 -9.92197 -9.12172 -8.95731 -8.77135 -8.38854 -6.61898 -6.28112 -4.01047 0.94749 1.13860 1.98026 2.11844 2.49612 2.93317 3.20606 3.22658 3.28160 3.41151 3.56321 4.13393 4.18546 4.51332 4.56989 4.70806 4.77610 4.85988 4.99024 5.06573 5.07932 5.10030 5.26056 5.35687 5.45139 5.48786 5.51426 5.60918 5.63820 5.74264 5.80292 6.02736 6.04545 6.18848 6.25468 6.27052 6.35634 6.46159 6.73421 7.54957 7.64699 7.96792 8.29762 9.17424 10.79442 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.021259 B = 0.002797 C = 0.002678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.784076 B =10008.976000 C =10452.304913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.093 4.093 3 C -0.105 4.105 4 C -0.126 4.126 5 C -0.086 4.086 6 C -0.096 4.096 7 C 0.143 3.857 8 H 0.134 0.866 9 O -0.327 6.327 10 C 0.483 3.517 11 O -0.483 6.483 12 C -0.127 4.127 13 S -0.056 6.056 14 C -0.536 4.536 15 H 0.077 0.923 16 C 0.075 3.925 17 N -0.867 5.867 18 Si 0.922 3.078 19 H -0.276 1.276 20 H -0.282 1.282 21 H -0.271 1.271 22 C 0.474 3.526 23 O -0.491 6.491 24 O -0.506 6.506 25 C -0.054 4.054 26 C -0.127 4.127 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.065 0.935 30 H 0.124 0.876 31 H 0.127 0.873 32 H 0.135 0.865 33 H 0.107 0.893 34 H 0.106 0.894 35 H 0.270 0.730 36 H 0.412 0.588 37 H 0.086 0.914 38 H 0.068 0.932 39 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.170 14.193 -10.571 26.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.093 4.093 3 C -0.123 4.123 4 C -0.144 4.144 5 C -0.104 4.104 6 C -0.096 4.096 7 C 0.085 3.915 8 H 0.151 0.849 9 O -0.244 6.244 10 C 0.325 3.675 11 O -0.368 6.368 12 C -0.274 4.274 13 S 0.171 5.829 14 C -0.684 4.684 15 H 0.095 0.905 16 C -0.135 4.135 17 N -0.502 5.502 18 Si 0.748 3.252 19 H -0.202 1.202 20 H -0.207 1.207 21 H -0.196 1.196 22 C 0.314 3.686 23 O -0.377 6.377 24 O -0.319 6.319 25 C -0.054 4.054 26 C -0.183 4.183 27 H 0.089 0.911 28 H 0.091 0.909 29 H 0.084 0.916 30 H 0.142 0.858 31 H 0.145 0.855 32 H 0.153 0.847 33 H 0.125 0.875 34 H 0.125 0.875 35 H 0.080 0.920 36 H 0.272 0.728 37 H 0.105 0.895 38 H 0.087 0.913 39 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -19.664 12.818 -10.160 25.577 hybrid contribution 1.958 1.153 -0.309 2.293 sum -17.706 13.971 -10.469 24.866 Atomic orbital electron populations 1.20844 0.90891 1.03017 1.02425 1.19676 0.96135 0.92176 1.01286 1.21109 0.94298 0.97487 0.99394 1.21126 0.94226 0.97958 1.01061 1.21091 1.00940 0.91286 0.97052 1.18969 0.92625 0.92137 1.05870 1.20520 0.84276 0.97728 0.88948 0.84921 1.86692 1.31221 1.41568 1.64959 1.23569 0.88171 0.81128 0.74658 1.90669 1.61987 1.28294 1.55835 1.23323 0.91375 1.09106 1.03609 1.85419 1.22197 1.07078 1.68252 1.22837 1.02687 1.01554 1.41303 0.90494 1.25006 0.98848 0.94389 0.95259 1.70003 1.37927 1.03688 1.38627 0.86109 0.81687 0.78165 0.79221 1.20167 1.20700 1.19550 1.23382 0.82280 0.74149 0.88797 1.90780 1.27585 1.49198 1.70159 1.84491 1.37991 1.77452 1.31944 1.19479 0.91816 0.95743 0.98378 1.21032 1.00098 0.93646 1.03527 0.91098 0.90932 0.91565 0.85835 0.85547 0.84742 0.87453 0.87550 0.92042 0.72839 0.89549 0.91328 0.90789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.72 9.61 36.01 0.35 -0.37 16 2 C -0.09 -0.84 5.88 -104.62 -0.62 -1.45 16 3 C -0.10 -0.91 9.70 -39.58 -0.38 -1.30 16 4 C -0.13 -1.21 10.05 -39.59 -0.40 -1.60 16 5 C -0.09 -1.01 9.35 -39.58 -0.37 -1.38 16 6 C -0.10 -1.17 5.04 -104.62 -0.53 -1.70 16 7 C 0.14 2.05 2.20 -29.03 -0.06 1.98 16 8 H 0.13 1.88 5.18 -51.93 -0.27 1.61 16 9 O -0.33 -5.49 8.26 -45.90 -0.38 -5.87 16 10 C 0.48 9.56 7.94 36.00 0.29 9.85 16 11 O -0.48 -10.63 15.08 -18.75 -0.28 -10.91 16 12 C -0.13 -2.63 6.27 36.00 0.23 -2.41 16 13 S -0.06 -1.50 20.58 -107.50 -2.21 -3.71 16 14 C -0.54 -15.09 9.50 30.94 0.29 -14.79 16 15 H 0.08 2.05 7.80 -52.49 -0.41 1.64 16 16 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 17 N -0.87 -25.82 13.22 55.49 0.73 -25.09 16 18 Si 0.92 21.24 29.55 -169.99 -5.02 16.22 16 19 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 20 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 21 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 22 C 0.47 6.78 7.61 36.00 0.27 7.05 16 23 O -0.49 -8.74 17.27 -25.39 -0.44 -9.17 16 24 O -0.51 -5.02 11.70 -39.25 -0.46 -5.48 16 25 C -0.05 -0.56 5.88 -104.63 -0.62 -1.18 16 26 C -0.13 -1.10 8.43 36.01 0.30 -0.79 16 27 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.07 0.41 5.95 -51.93 -0.31 0.10 16 29 H 0.07 0.34 8.09 -51.93 -0.42 -0.08 16 30 H 0.12 0.78 8.06 -52.49 -0.42 0.35 16 31 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 32 H 0.13 1.61 7.34 -52.49 -0.39 1.23 16 33 H 0.11 2.12 8.14 -51.92 -0.42 1.70 16 34 H 0.11 2.00 8.14 -51.91 -0.42 1.58 16 35 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 36 H 0.41 2.32 9.10 45.56 0.41 2.73 16 37 H 0.09 0.68 7.24 -51.93 -0.38 0.31 16 38 H 0.07 0.65 6.03 -51.93 -0.31 0.34 16 39 H 0.07 0.51 5.95 -51.93 -0.31 0.20 16 LS Contribution 351.44 15.07 5.30 5.30 Total: -1.00 -35.25 351.44 -7.73 -42.98 By element: Atomic # 1 Polarization: 5.45 SS G_CDS: -3.62 Total: 1.82 kcal Atomic # 6 Polarization: -4.74 SS G_CDS: -1.34 Total: -6.08 kcal Atomic # 7 Polarization: -25.82 SS G_CDS: 0.73 Total: -25.09 kcal Atomic # 8 Polarization: -29.88 SS G_CDS: -1.56 Total: -31.44 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Atomic # 16 Polarization: -1.50 SS G_CDS: -2.21 Total: -3.71 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -35.25 -7.73 -42.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001607844961.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.671 kcal (2) G-P(sol) polarization free energy of solvation -35.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds