Wall clock time and date at job start Tue Mar 31 2020 13:40:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38262 * 119.99657 * 2 1 4 4 C 1.38208 * 119.99554 * 179.97438 * 3 2 1 5 5 C 1.38255 * 120.00357 * 359.97438 * 4 3 2 6 6 C 1.38220 * 119.99681 * 359.97438 * 5 4 3 7 7 C 1.50706 * 119.99654 * 180.02562 * 6 5 4 8 8 H 1.08996 * 109.46538 * 145.00372 * 7 6 5 9 9 O 1.45196 * 109.47199 * 25.00580 * 7 6 5 10 10 C 1.34229 * 117.00136 * 149.99976 * 9 7 6 11 11 O 1.20828 * 119.99815 * 359.97438 * 10 9 7 12 12 C 1.50696 * 120.00173 * 179.97438 * 10 9 7 13 13 S 1.81000 * 109.47330 * 179.97438 * 12 10 9 14 14 C 1.76202 * 99.99942 * 179.97438 * 13 12 10 15 15 H 1.07990 * 120.00288 * 0.02562 * 14 13 12 16 16 C 1.38804 * 119.99415 * 179.97438 * 14 13 12 17 17 N 1.31624 * 120.00627 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99640 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47115 * 89.99910 * 18 16 14 20 20 H 1.48495 * 109.47078 * 210.00096 * 18 16 14 21 21 H 1.48505 * 109.46954 * 330.00173 * 18 16 14 22 22 C 1.50698 * 109.47218 * 265.00027 * 7 6 5 23 23 O 1.20823 * 119.99694 * 115.00426 * 22 7 6 24 24 O 1.34227 * 120.00337 * 295.00394 * 22 7 6 25 25 C 1.38205 * 119.99888 * 179.97438 * 2 1 3 26 26 C 1.50700 * 120.00223 * 359.97438 * 25 2 1 27 27 H 1.08997 * 109.46659 * 90.00566 * 1 2 3 28 28 H 1.08994 * 109.46968 * 210.00315 * 1 2 3 29 29 H 1.08994 * 109.47161 * 330.00621 * 1 2 3 30 30 H 1.07992 * 119.99989 * 359.97273 * 3 2 1 31 31 H 1.08000 * 120.00313 * 179.97438 * 4 3 2 32 32 H 1.08000 * 120.00604 * 179.70652 * 5 4 3 33 33 H 1.09004 * 109.47261 * 300.00115 * 12 10 9 34 34 H 1.09006 * 109.47300 * 59.99669 * 12 10 9 35 35 H 0.96997 * 120.00498 * 179.97438 * 17 16 14 36 36 H 0.96694 * 117.00568 * 179.97438 * 24 22 7 37 37 H 1.09003 * 109.47247 * 89.99725 * 26 25 2 38 38 H 1.09001 * 109.47092 * 209.99946 * 26 25 2 39 39 H 1.09003 * 109.47158 * 329.99680 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1974 0.0005 5 6 4.2717 0.0001 0.0016 6 6 3.5806 -1.1969 0.0027 7 6 4.3342 -2.5020 0.0044 8 1 3.7866 -3.2369 0.5944 9 8 5.6504 -2.3002 0.5834 10 6 6.2010 -3.3435 1.2236 11 8 5.6028 -4.3907 1.2982 12 6 7.5653 -3.2089 1.8494 13 16 8.0277 -4.7744 2.6313 14 6 9.6157 -4.3441 3.2620 15 1 10.0082 -3.3505 3.1044 16 6 10.3616 -5.2821 3.9623 17 7 9.8830 -6.4931 4.1549 18 14 12.0449 -4.8258 4.6316 19 1 11.9003 -4.2812 6.0056 20 1 12.9079 -6.0337 4.6663 21 1 12.6645 -3.7996 3.7551 22 6 4.4787 -3.0006 -1.4103 23 8 5.5744 -3.0826 -1.9129 24 8 3.3903 -3.3534 -2.1121 25 6 2.1981 -1.1969 0.0005 26 6 1.4446 -2.5020 0.0017 27 1 -0.3632 -0.0001 -1.0277 28 1 -0.3633 -0.8899 0.5139 29 1 -0.3633 0.8900 0.5137 30 1 1.6583 2.1326 -0.0004 31 1 4.1205 2.1327 0.0001 32 1 5.3517 0.0000 -0.0028 33 1 8.2949 -2.9574 1.0796 34 1 7.5440 -2.4200 2.6013 35 1 10.4044 -7.1486 4.6440 36 1 3.5330 -3.6668 -3.0157 37 1 1.2625 -2.8174 -1.0257 38 1 2.0339 -3.2613 0.5158 39 1 0.4924 -2.3714 0.5159 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001607844961.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:40:12 Heat of formation + Delta-G solvation = -174.779095 kcal Electronic energy + Delta-G solvation = -24649.759875 eV Core-core repulsion = 20840.861654 eV Total energy + Delta-G solvation = -3808.898221 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.091 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.46591 -41.02345 -40.49196 -37.95964 -37.22848 -34.63130 -34.34860 -34.32478 -31.59392 -29.59423 -28.15068 -27.71985 -27.19510 -24.10969 -22.93776 -21.82141 -21.46315 -20.01732 -19.45756 -18.96185 -18.49689 -17.91352 -16.99162 -16.94794 -16.89431 -16.57304 -16.54171 -16.00972 -15.32924 -15.09922 -14.76849 -14.63434 -14.47585 -14.00757 -13.92669 -13.76230 -13.45977 -13.42932 -13.21208 -12.95460 -12.89888 -12.79684 -12.74278 -12.68499 -12.56491 -12.00725 -11.88567 -11.81168 -11.76404 -11.64759 -11.17435 -10.43531 -9.75163 -9.49609 -8.76957 -8.39324 -6.19672 0.13588 0.39006 0.69688 0.83592 0.94753 1.35977 1.42666 1.50663 1.59508 1.96429 2.21809 2.72125 2.95894 3.16098 3.25012 3.52689 3.61813 3.87079 3.94930 4.04620 4.09584 4.12842 4.27007 4.36049 4.45210 4.67237 4.77494 4.78225 4.86051 4.93118 4.97122 5.00384 5.19592 5.32283 5.39632 5.41474 5.49029 5.52173 5.65257 6.02398 6.16500 6.39770 6.71877 7.02320 8.70060 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.021259 B = 0.002797 C = 0.002678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.784076 B =10008.976000 C =10452.304913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.094 4.094 3 C -0.103 4.103 4 C -0.128 4.128 5 C -0.108 4.108 6 C -0.115 4.115 7 C 0.137 3.863 8 H 0.133 0.867 9 O -0.321 6.321 10 C 0.490 3.510 11 O -0.511 6.511 12 C -0.108 4.108 13 S -0.131 6.131 14 C -0.549 4.549 15 H 0.086 0.914 16 C 0.017 3.983 17 N -0.910 5.910 18 Si 1.001 2.999 19 H -0.266 1.266 20 H -0.277 1.277 21 H -0.259 1.259 22 C 0.480 3.520 23 O -0.534 6.534 24 O -0.487 6.487 25 C -0.062 4.062 26 C -0.127 4.127 27 H 0.082 0.918 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.153 0.847 31 H 0.147 0.853 32 H 0.122 0.878 33 H 0.120 0.880 34 H 0.129 0.871 35 H 0.273 0.727 36 H 0.433 0.567 37 H 0.094 0.906 38 H 0.054 0.946 39 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.311 16.529 -10.871 28.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.094 4.094 3 C -0.120 4.120 4 C -0.145 4.145 5 C -0.126 4.126 6 C -0.115 4.115 7 C 0.081 3.919 8 H 0.150 0.850 9 O -0.238 6.238 10 C 0.333 3.667 11 O -0.398 6.398 12 C -0.256 4.256 13 S 0.096 5.904 14 C -0.697 4.697 15 H 0.105 0.895 16 C -0.189 4.189 17 N -0.546 5.546 18 Si 0.822 3.178 19 H -0.191 1.191 20 H -0.202 1.202 21 H -0.183 1.183 22 C 0.322 3.678 23 O -0.424 6.424 24 O -0.301 6.301 25 C -0.062 4.062 26 C -0.183 4.183 27 H 0.101 0.899 28 H 0.096 0.904 29 H 0.099 0.901 30 H 0.171 0.829 31 H 0.164 0.836 32 H 0.140 0.860 33 H 0.138 0.862 34 H 0.147 0.853 35 H 0.082 0.918 36 H 0.296 0.704 37 H 0.112 0.888 38 H 0.073 0.927 39 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -20.850 15.170 -10.491 27.837 hybrid contribution 2.104 0.521 -0.327 2.192 sum -18.746 15.692 -10.818 26.733 Atomic orbital electron populations 1.20917 0.88639 1.04066 1.03462 1.20071 0.97778 0.91646 0.99916 1.21503 0.94011 0.98696 0.97816 1.21387 0.94986 0.97864 1.00308 1.21140 1.00628 0.92200 0.98638 1.18956 0.93409 0.90996 1.08165 1.20802 0.82735 0.99423 0.88963 0.85007 1.86638 1.32739 1.39961 1.64443 1.23262 0.87783 0.81203 0.74491 1.90655 1.62693 1.29456 1.57028 1.23110 0.92441 1.05870 1.04159 1.85504 1.23052 1.12339 1.69472 1.23189 1.02859 1.02145 1.41474 0.89544 1.26126 1.03319 0.94118 0.95302 1.70153 1.39829 1.04998 1.39579 0.84920 0.75944 0.78141 0.78783 1.19065 1.20205 1.18311 1.23373 0.82309 0.73237 0.88915 1.90764 1.29171 1.51279 1.71139 1.84437 1.35850 1.76552 1.33291 1.19696 0.91077 0.97134 0.98312 1.21075 1.00583 0.92530 1.04076 0.89921 0.90363 0.90113 0.82912 0.83550 0.85980 0.86222 0.85263 0.91770 0.70365 0.88791 0.92737 0.88781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.02 9.61 71.24 0.68 -0.34 16 2 C -0.09 -1.45 5.88 -19.86 -0.12 -1.56 16 3 C -0.10 -1.49 9.70 22.27 0.22 -1.27 16 4 C -0.13 -2.23 10.05 22.27 0.22 -2.00 16 5 C -0.11 -2.50 9.35 22.27 0.21 -2.30 16 6 C -0.11 -2.79 5.04 -19.86 -0.10 -2.89 16 7 C 0.14 4.01 2.20 29.10 0.06 4.07 16 8 H 0.13 3.85 5.18 -2.39 -0.01 3.84 16 9 O -0.32 -11.02 8.26 -45.06 -0.37 -11.40 16 10 C 0.49 19.83 7.94 71.23 0.57 20.39 16 11 O -0.51 -23.25 15.08 21.96 0.33 -22.92 16 12 C -0.11 -4.52 6.27 71.23 0.45 -4.08 16 13 S -0.13 -7.21 20.58 -56.49 -1.16 -8.37 16 14 C -0.55 -31.18 9.50 67.96 0.65 -30.54 16 15 H 0.09 4.57 7.80 -2.92 -0.02 4.55 16 16 C 0.02 0.93 5.49 84.86 0.47 1.40 16 17 N -0.91 -55.15 13.22 21.65 0.29 -54.87 16 18 Si 1.00 43.35 29.55 68.60 2.03 45.38 16 19 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 20 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 21 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 22 C 0.48 13.83 7.61 71.24 0.54 14.37 16 23 O -0.53 -19.39 17.27 28.33 0.49 -18.91 16 24 O -0.49 -9.21 11.70 -51.39 -0.60 -9.81 16 25 C -0.06 -1.20 5.88 -19.87 -0.12 -1.32 16 26 C -0.13 -2.01 8.43 71.24 0.60 -1.41 16 27 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 28 H 0.08 0.62 5.95 -2.39 -0.01 0.61 16 29 H 0.08 0.52 8.09 -2.39 -0.02 0.50 16 30 H 0.15 1.29 8.06 -2.91 -0.02 1.27 16 31 H 0.15 1.86 8.06 -2.91 -0.02 1.84 16 32 H 0.12 3.01 7.34 -2.91 -0.02 2.99 16 33 H 0.12 4.74 8.14 -2.39 -0.02 4.72 16 34 H 0.13 4.81 8.14 -2.39 -0.02 4.79 16 35 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 36 H 0.43 4.27 9.10 -74.06 -0.67 3.59 16 37 H 0.09 1.31 7.24 -2.39 -0.02 1.30 16 38 H 0.05 1.02 6.03 -2.39 -0.01 1.00 16 39 H 0.09 1.08 5.95 -2.39 -0.01 1.06 16 Total: -1.00 -78.10 351.44 5.76 -72.33 By element: Atomic # 1 Polarization: 15.59 SS G_CDS: 0.43 Total: 16.02 kcal Atomic # 6 Polarization: -11.79 SS G_CDS: 4.33 Total: -7.46 kcal Atomic # 7 Polarization: -55.15 SS G_CDS: 0.29 Total: -54.87 kcal Atomic # 8 Polarization: -62.88 SS G_CDS: -0.15 Total: -63.04 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.38 kcal Atomic # 16 Polarization: -7.21 SS G_CDS: -1.16 Total: -8.37 kcal Total: -78.10 5.76 -72.33 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001607844961.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.445 kcal (2) G-P(sol) polarization free energy of solvation -78.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds