Wall clock time and date at job start Tue Mar 31 2020 13:32:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 119.99967 * 2 1 4 4 H 1.48503 * 109.46820 * 269.99601 * 3 2 1 5 5 H 1.48492 * 109.47267 * 29.99571 * 3 2 1 6 6 H 1.48495 * 109.47223 * 150.00055 * 3 2 1 7 7 C 1.37879 * 119.99968 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00107 * 177.52860 * 7 2 1 9 9 C 1.50698 * 119.99936 * 357.52455 * 7 2 1 10 10 C 1.53004 * 113.00073 * 294.94474 * 9 7 2 11 11 O 1.45195 * 109.47224 * 286.17366 * 10 9 7 12 12 C 1.34701 * 117.00034 * 184.71181 * 11 10 9 13 13 O 1.21460 * 120.00180 * 4.98996 * 12 11 10 14 14 C 1.47787 * 120.00311 * 184.98310 * 12 11 10 15 15 C 1.39693 * 120.01894 * 354.59952 * 14 12 11 16 16 C 1.37698 * 120.02893 * 180.25054 * 15 14 12 17 17 C 1.39680 * 120.07668 * 359.77307 * 16 15 14 18 18 C 1.47953 * 119.97686 * 179.97438 * 17 16 15 19 19 O 1.21443 * 119.99974 * 179.97438 * 18 17 16 20 20 O 1.34688 * 119.99794 * 359.97046 * 18 17 16 21 21 C 1.39453 * 120.04499 * 359.94807 * 17 16 15 22 22 C 1.38197 * 119.96893 * 0.02583 * 21 17 16 23 23 F 1.35109 * 120.03701 * 179.97438 * 22 21 17 24 24 C 1.54039 * 113.92734 * 66.88060 * 9 7 2 25 25 O 1.44179 * 85.51632 * 91.65925 * 24 9 7 26 26 C 1.44175 * 93.34258 * 24.19526 * 25 24 9 27 27 H 0.96995 * 120.00317 * 5.01015 * 1 2 3 28 28 H 1.09002 * 109.46613 * 166.17995 * 10 9 7 29 29 H 1.09001 * 109.46881 * 46.18118 * 10 9 7 30 30 H 1.07997 * 119.98695 * 359.97438 * 15 14 12 31 31 H 1.08000 * 119.95952 * 179.74008 * 16 15 14 32 32 H 0.96702 * 116.99658 * 180.02562 * 20 18 17 33 33 H 1.08003 * 120.01524 * 180.02562 * 21 17 16 34 34 H 1.08995 * 113.86378 * 205.80493 * 24 9 7 35 35 H 1.09000 * 113.86490 * 337.50941 * 24 9 7 36 36 H 1.08998 * 113.86150 * 221.66192 * 26 25 24 37 37 H 1.08995 * 113.97968 * 89.96833 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6526 0.6999 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0838 -1.1946 -0.0398 9 6 1.2521 -2.4985 0.0575 10 6 0.4872 -2.6907 1.3686 11 8 1.4237 -2.9974 2.4349 12 6 0.9019 -3.2928 3.6410 13 8 -0.3018 -3.3832 3.7763 14 6 1.7938 -3.5071 4.7997 15 6 3.1795 -3.5153 4.6230 16 6 4.0105 -3.7201 5.7016 17 6 3.4700 -3.9152 6.9747 18 6 4.3650 -4.1356 8.1320 19 8 3.8955 -4.3048 9.2392 20 8 5.7005 -4.1486 7.9576 21 6 2.0873 -3.9018 7.1557 22 6 1.2515 -3.6959 6.0746 23 9 -0.0883 -3.6833 6.2483 24 6 0.4131 -2.7913 -1.2008 25 8 1.5845 -3.4792 -1.6838 26 6 2.0935 -3.7206 -0.3566 27 1 -0.4850 0.8368 -0.0734 28 1 -0.2205 -3.5125 1.2591 29 1 -0.0532 -1.7757 1.6114 30 1 3.5990 -3.3654 3.6392 31 1 5.0816 -3.7304 5.5630 32 1 6.2444 -4.2967 8.7434 33 1 1.6699 -4.0524 8.1404 34 1 -0.4394 -3.4458 -1.0199 35 1 0.1555 -1.9018 -1.7758 36 1 3.1686 -3.5681 -0.2622 37 1 1.7553 -4.6585 0.0837 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608179044.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:38 Heat of formation + Delta-G solvation = -199.325196 kcal Electronic energy + Delta-G solvation = -26937.793043 eV Core-core repulsion = 22561.617248 eV Total energy + Delta-G solvation = -4376.175795 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.093 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.05222 -40.84119 -40.07122 -39.23118 -38.40121 -36.53213 -35.84279 -33.05413 -32.17943 -31.02201 -29.95739 -26.45096 -25.47772 -25.19012 -24.26192 -23.01804 -22.25761 -20.81848 -19.09564 -18.79933 -18.08641 -17.61746 -16.88885 -16.29736 -16.24410 -16.12453 -15.99158 -15.82460 -15.39471 -14.99373 -14.75948 -14.41075 -14.35303 -14.26362 -13.97978 -13.39606 -13.00783 -12.93787 -12.54122 -12.21898 -12.06434 -11.94486 -11.83214 -11.73413 -11.13078 -11.03367 -10.86313 -10.53556 -10.34715 -10.11853 -9.72332 -9.62649 -9.40306 -9.18312 -9.14817 -8.77455 -8.41748 -6.24561 -4.30880 -0.15560 0.78179 1.83255 2.43648 2.70675 2.97180 3.21255 3.28825 3.30902 3.41319 3.87347 4.26554 4.30934 4.46783 4.57979 4.73912 4.82077 4.89662 5.09961 5.28194 5.53442 5.65297 5.72609 5.79663 5.95291 5.98425 6.01395 6.10878 6.25684 6.29108 6.31702 6.48303 6.84134 7.06152 7.15477 7.22558 7.31533 7.41741 7.70973 8.08615 8.17182 8.67982 9.34378 10.82437 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.014524 B = 0.003377 C = 0.003225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1927.327978 B = 8288.705753 C = 8679.963266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.066 3.934 3 Si 0.899 3.101 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.271 1.271 7 C -0.492 4.492 8 H 0.068 0.932 9 C 0.034 3.966 10 C 0.081 3.919 11 O -0.332 6.332 12 C 0.493 3.507 13 O -0.496 6.496 14 C -0.114 4.114 15 C -0.044 4.044 16 C -0.085 4.085 17 C -0.077 4.077 18 C 0.531 3.469 19 O -0.506 6.506 20 O -0.506 6.506 21 C -0.107 4.107 22 C 0.150 3.850 23 F -0.108 7.108 24 C 0.051 3.949 25 O -0.389 6.389 26 C 0.032 3.968 27 H 0.267 0.733 28 H 0.042 0.958 29 H 0.094 0.906 30 H 0.164 0.836 31 H 0.154 0.846 32 H 0.418 0.582 33 H 0.158 0.842 34 H 0.049 0.951 35 H 0.097 0.903 36 H 0.078 0.922 37 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.708 -7.624 13.049 17.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.137 4.137 3 Si 0.727 3.273 4 H -0.204 1.204 5 H -0.211 1.211 6 H -0.196 1.196 7 C -0.529 4.529 8 H 0.086 0.914 9 C 0.033 3.967 10 C 0.007 3.993 11 O -0.247 6.247 12 C 0.336 3.664 13 O -0.386 6.386 14 C -0.116 4.116 15 C -0.062 4.062 16 C -0.104 4.104 17 C -0.078 4.078 18 C 0.374 3.626 19 O -0.395 6.395 20 O -0.318 6.318 21 C -0.126 4.126 22 C 0.130 3.870 23 F -0.085 7.085 24 C -0.026 4.026 25 O -0.307 6.307 26 C -0.045 4.045 27 H 0.077 0.923 28 H 0.060 0.940 29 H 0.112 0.888 30 H 0.182 0.818 31 H 0.172 0.828 32 H 0.277 0.723 33 H 0.176 0.824 34 H 0.067 0.933 35 H 0.115 0.885 36 H 0.097 0.903 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 7.851 -7.553 12.790 16.801 hybrid contribution 0.146 0.897 0.721 1.160 sum 7.996 -6.656 13.510 17.052 Atomic orbital electron populations 1.69848 1.05936 1.27724 1.49088 1.24995 0.94991 0.99445 0.94294 0.86452 0.79839 0.82709 0.78328 1.20428 1.21121 1.19600 1.20647 0.93093 0.88188 1.50975 0.91424 1.21119 0.92490 0.94688 0.88390 1.23730 0.90347 1.00218 0.84956 1.86496 1.42320 1.77785 1.18112 1.20774 0.86659 0.74958 0.84044 1.90868 1.15714 1.46821 1.85177 1.19752 0.94753 1.05915 0.91218 1.21567 0.90573 0.93073 1.01012 1.21529 1.01651 0.96751 0.90427 1.18927 0.91637 1.04944 0.92336 1.20715 0.81221 0.72681 0.87945 1.90913 1.76889 1.45372 1.26360 1.84543 1.18390 1.84276 1.44625 1.21081 0.91649 1.00383 0.99441 1.17403 0.78336 0.99146 0.92090 1.91645 1.28281 1.92875 1.95746 1.23914 0.87663 0.94789 0.96227 1.89499 1.37651 1.77861 1.25736 1.23968 0.99825 0.97315 0.83352 0.92341 0.93971 0.88787 0.81797 0.82790 0.72263 0.82442 0.93319 0.88497 0.90333 0.92798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.34 11.26 55.43 0.62 -22.71 16 2 C 0.07 1.67 5.18 -17.82 -0.09 1.58 16 3 Si 0.90 20.08 29.54 -169.99 -5.02 15.06 16 4 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 6 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 7 C -0.49 -12.40 8.30 -34.44 -0.29 -12.69 16 8 H 0.07 1.70 7.81 -52.49 -0.41 1.29 16 9 C 0.03 0.78 0.57 -154.57 -0.09 0.69 16 10 C 0.08 1.80 4.88 37.16 0.18 1.98 16 11 O -0.33 -6.63 9.23 -40.49 -0.37 -7.00 16 12 C 0.49 9.24 7.88 34.64 0.27 9.51 16 13 O -0.50 -10.66 15.04 -19.24 -0.29 -10.95 16 14 C -0.11 -1.66 5.88 -104.86 -0.62 -2.28 16 15 C -0.04 -0.50 9.60 -39.24 -0.38 -0.88 16 16 C -0.09 -0.77 9.60 -39.24 -0.38 -1.15 16 17 C -0.08 -0.76 5.87 -104.93 -0.62 -1.38 16 18 C 0.53 4.88 8.28 34.71 0.29 5.16 16 19 O -0.51 -5.99 17.12 -19.22 -0.33 -6.32 16 20 O -0.51 -3.03 12.67 -40.46 -0.51 -3.54 16 21 C -0.11 -1.18 9.56 -39.14 -0.37 -1.55 16 22 C 0.15 2.06 7.27 -39.01 -0.28 1.77 16 23 F -0.11 -1.70 15.55 2.25 0.04 -1.67 16 24 C 0.05 1.16 7.94 37.61 0.30 1.46 16 25 O -0.39 -8.91 12.40 -35.23 -0.44 -9.35 16 26 C 0.03 0.67 8.12 37.61 0.31 0.97 16 27 H 0.27 6.76 8.32 -40.82 -0.34 6.42 16 28 H 0.04 0.91 7.73 -51.93 -0.40 0.50 16 29 H 0.09 2.38 6.74 -51.93 -0.35 2.03 16 30 H 0.16 1.74 7.61 -52.49 -0.40 1.34 16 31 H 0.15 1.01 7.60 -52.49 -0.40 0.61 16 32 H 0.42 0.63 9.11 45.56 0.42 1.04 16 33 H 0.16 1.57 7.63 -52.48 -0.40 1.17 16 34 H 0.05 1.01 7.93 -51.93 -0.41 0.60 16 35 H 0.10 2.37 7.56 -51.93 -0.39 1.98 16 36 H 0.08 1.53 8.08 -51.93 -0.42 1.11 16 37 H 0.05 1.00 8.10 -51.93 -0.42 0.58 16 LS Contribution 337.26 15.07 5.08 5.08 Total: -1.00 -31.21 337.26 -5.71 -36.92 By element: Atomic # 1 Polarization: 4.00 SS G_CDS: -2.72 Total: 1.28 kcal Atomic # 6 Polarization: 4.98 SS G_CDS: -1.77 Total: 3.21 kcal Atomic # 7 Polarization: -23.34 SS G_CDS: 0.62 Total: -22.71 kcal Atomic # 8 Polarization: -35.23 SS G_CDS: -1.94 Total: -37.17 kcal Atomic # 9 Polarization: -1.70 SS G_CDS: 0.04 Total: -1.67 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.06 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.21 -5.71 -36.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608179044.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -162.406 kcal (2) G-P(sol) polarization free energy of solvation -31.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -193.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -199.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds