Wall clock time and date at job start Tue Mar 31 2020 13:35:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86796 * 120.00165 * 2 1 4 4 H 1.48501 * 109.46999 * 270.00211 * 3 2 1 5 5 H 1.48502 * 109.47361 * 29.99934 * 3 2 1 6 6 H 1.48501 * 109.47054 * 150.00096 * 3 2 1 7 7 C 1.37878 * 119.99766 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99961 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99954 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47494 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47657 * 179.97438 * 10 9 7 12 12 C 1.50699 * 109.47475 * 180.02562 * 11 10 9 13 13 O 1.20833 * 119.99839 * 359.97438 * 12 11 10 14 14 O 1.34226 * 120.00288 * 180.02562 * 12 11 10 15 15 C 1.35996 * 117.00429 * 175.08583 * 14 12 11 16 16 C 1.38736 * 119.97511 * 256.81787 * 15 14 12 17 17 C 1.38068 * 120.02150 * 179.76211 * 16 15 14 18 18 C 1.38945 * 119.97685 * 0.50874 * 17 16 15 19 19 S 1.76198 * 120.02417 * 179.72092 * 18 17 16 20 20 C 1.81397 * 103.00265 * 0.02562 * 19 18 17 21 21 C 1.50700 * 109.47380 * 179.97438 * 20 19 18 22 22 O 1.20817 * 119.99604 * 0.02562 * 21 20 19 23 23 O 1.34225 * 120.00233 * 179.97438 * 21 20 19 24 24 C 1.38946 * 119.94904 * 359.74721 * 18 17 16 25 25 C 1.38064 * 119.97241 * 359.97438 * 24 18 17 26 26 H 0.96998 * 119.99664 * 359.97438 * 1 2 3 27 27 H 1.09000 * 109.47438 * 59.99414 * 9 7 2 28 28 H 1.09005 * 109.47473 * 299.99902 * 9 7 2 29 29 H 1.08995 * 109.46892 * 59.99559 * 10 9 7 30 30 H 1.09005 * 109.46655 * 300.00372 * 10 9 7 31 31 H 1.09008 * 109.47115 * 59.99617 * 11 10 9 32 32 H 1.09003 * 109.46961 * 300.00057 * 11 10 9 33 33 H 1.07999 * 119.98687 * 359.97438 * 16 15 14 34 34 H 1.08008 * 120.01000 * 180.23287 * 17 16 15 35 35 H 1.09001 * 109.47039 * 299.99948 * 20 19 18 36 36 H 1.09000 * 109.46965 * 59.99439 * 20 19 18 37 37 H 0.96697 * 117.00501 * 179.97438 * 23 21 20 38 38 H 1.08000 * 120.01262 * 179.97438 * 24 18 17 39 39 H 1.07997 * 119.98217 * 179.97438 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 6 2.2451 -3.6622 -0.0015 11 6 1.4801 -4.9871 -0.0020 12 6 2.4593 -6.1327 -0.0011 13 8 3.6473 -5.9119 -0.0006 14 8 2.0118 -7.3981 -0.0019 15 6 2.9443 -8.3827 -0.1048 16 6 3.1281 -9.0398 -1.3128 17 6 4.0778 -10.0362 -1.4197 18 6 4.8424 -10.3880 -0.3142 19 16 6.0497 -11.6644 -0.4473 20 6 5.9065 -12.1826 -2.1797 21 6 6.8924 -13.2883 -2.4565 22 8 7.6168 -13.6862 -1.5753 23 8 6.9649 -13.8317 -3.6817 24 6 4.6537 -9.7329 0.8966 25 6 3.7074 -8.7329 0.9996 26 1 -0.4849 0.8401 0.0004 27 1 0.6246 -2.5563 -0.8919 28 1 0.6239 -2.5575 0.8880 29 1 2.8711 -3.6048 0.8890 30 1 2.8725 -3.6040 -0.8910 31 1 0.8537 -5.0447 -0.8923 32 1 0.8530 -5.0450 0.8877 33 1 2.5304 -8.7694 -2.1708 34 1 4.2234 -10.5450 -2.3613 35 1 4.8949 -12.5414 -2.3692 36 1 6.1193 -11.3350 -2.8312 37 1 7.6128 -14.5377 -3.8113 38 1 5.2471 -10.0058 1.7567 39 1 3.5603 -8.2239 1.9407 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608180517.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:35:26 Heat of formation + Delta-G solvation = -152.077260 kcal Electronic energy + Delta-G solvation = -22890.353034 eV Core-core repulsion = 19082.439239 eV Total energy + Delta-G solvation = -3807.913795 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.091 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.29007 -40.80305 -38.91021 -36.85409 -36.79403 -34.38348 -32.21864 -31.95439 -31.01649 -30.44632 -28.19954 -24.79300 -23.57437 -23.13985 -22.41110 -21.17330 -19.94885 -18.91548 -18.43896 -18.01033 -17.06496 -16.95972 -16.81425 -16.69688 -16.12823 -15.39391 -15.12012 -14.86405 -14.46142 -14.19482 -14.00282 -13.80481 -13.64865 -13.59266 -13.13756 -12.47841 -12.32518 -12.19571 -12.17735 -11.96548 -11.51535 -11.33419 -10.99866 -10.86764 -10.77333 -10.73495 -10.62087 -10.46031 -9.90159 -9.79793 -9.44819 -9.41462 -9.13586 -8.37376 -7.80898 -6.02834 -4.04903 0.59518 0.61822 0.94905 1.47856 1.74710 2.27344 2.37693 2.69110 3.31780 3.37952 3.40774 3.42850 4.16239 4.34588 4.41082 4.44811 4.45876 4.55126 4.73926 4.90597 5.06779 5.30624 5.33386 5.51124 5.52944 5.55492 5.71692 5.78974 5.80815 6.01238 6.03664 6.26380 6.54295 6.63999 6.74298 7.01439 7.15894 7.62335 7.73247 7.93104 7.96541 8.38802 9.01661 9.59440 11.08497 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.029020 B = 0.001741 C = 0.001713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.608258 B =16074.836963 C =16339.998507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.521 4.521 8 H 0.056 0.944 9 C 0.021 3.979 10 C -0.100 4.100 11 C -0.109 4.109 12 C 0.458 3.542 13 O -0.488 6.488 14 O -0.301 6.301 15 C 0.090 3.910 16 C -0.100 4.100 17 C -0.121 4.121 18 C -0.106 4.106 19 S -0.028 6.028 20 C -0.133 4.133 21 C 0.501 3.499 22 O -0.493 6.493 23 O -0.509 6.509 24 C -0.080 4.080 25 C -0.099 4.099 26 H 0.261 0.739 27 H 0.019 0.981 28 H 0.019 0.981 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.105 0.895 32 H 0.105 0.895 33 H 0.137 0.863 34 H 0.130 0.870 35 H 0.132 0.868 36 H 0.133 0.867 37 H 0.419 0.581 38 H 0.137 0.863 39 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.451 -29.169 -5.077 30.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.559 4.559 8 H 0.075 0.925 9 C -0.016 4.016 10 C -0.138 4.138 11 C -0.146 4.146 12 C 0.302 3.698 13 O -0.371 6.371 14 O -0.218 6.218 15 C 0.047 3.953 16 C -0.120 4.120 17 C -0.145 4.145 18 C -0.218 4.218 19 S 0.215 5.785 20 C -0.281 4.281 21 C 0.341 3.659 22 O -0.380 6.380 23 O -0.322 6.322 24 C -0.103 4.103 25 C -0.120 4.120 26 H 0.070 0.930 27 H 0.037 0.963 28 H 0.037 0.963 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.123 0.877 32 H 0.123 0.877 33 H 0.155 0.845 34 H 0.148 0.852 35 H 0.150 0.850 36 H 0.151 0.849 37 H 0.279 0.721 38 H 0.154 0.846 39 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 9.437 -29.326 -3.992 31.064 hybrid contribution -0.056 1.003 -1.106 1.495 sum 9.381 -28.323 -5.098 30.268 Atomic orbital electron populations 1.69961 1.06025 1.26664 1.50843 1.25017 0.94876 0.99296 0.95261 0.86573 0.79874 0.83326 0.78124 1.20658 1.21207 1.19841 1.21223 0.93181 0.90871 1.50634 0.92527 1.19131 0.93865 0.91100 0.97526 1.21614 0.99033 0.91059 1.02111 1.21759 0.97179 0.90033 1.05633 1.24953 0.90586 0.82538 0.71770 1.90689 1.18409 1.84153 1.43893 1.84720 1.37726 1.15402 1.83913 1.18592 0.92339 0.90681 0.93723 1.21080 0.97746 0.96639 0.96503 1.20966 0.96866 0.99197 0.97475 1.21915 1.01080 1.01415 0.97411 1.86179 1.45310 1.39575 1.07483 1.23348 1.02947 1.00267 1.01543 1.22106 0.82028 0.81666 0.80142 1.90805 1.41348 1.60088 1.45772 1.84469 1.61400 1.53195 1.33151 1.20558 0.98098 0.95467 0.96207 1.21298 0.94638 0.97213 0.98820 0.92977 0.96289 0.96256 0.92303 0.92349 0.87720 0.87712 0.84496 0.85196 0.84971 0.84948 0.72119 0.84554 0.84585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.48 13.29 55.43 0.74 -25.74 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.63 29.54 -169.99 -5.02 16.60 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.52 -14.66 9.11 -34.44 -0.31 -14.97 16 8 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 9 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 10 C -0.10 -2.04 4.44 -26.73 -0.12 -2.16 16 11 C -0.11 -1.71 5.81 -27.89 -0.16 -1.87 16 12 C 0.46 7.27 7.83 36.01 0.28 7.55 16 13 O -0.49 -9.14 15.47 -18.76 -0.29 -9.43 16 14 O -0.30 -4.23 10.02 -23.74 -0.24 -4.47 16 15 C 0.09 1.17 5.14 -39.21 -0.20 0.96 16 16 C -0.10 -1.06 9.98 -39.46 -0.39 -1.46 16 17 C -0.12 -1.08 9.36 -39.38 -0.37 -1.44 16 18 C -0.11 -1.01 6.11 -39.06 -0.24 -1.25 16 19 S -0.03 -0.24 21.06 -107.50 -2.26 -2.50 16 20 C -0.13 -0.72 4.93 36.01 0.18 -0.54 16 21 C 0.50 3.27 8.35 36.01 0.30 3.57 16 22 O -0.49 -4.95 16.62 -18.74 -0.31 -5.27 16 23 O -0.51 -2.02 13.42 -39.24 -0.53 -2.55 16 24 C -0.08 -0.82 9.79 -39.38 -0.39 -1.21 16 25 C -0.10 -1.18 9.56 -39.46 -0.38 -1.56 16 26 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 27 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 30 H 0.06 1.22 8.10 -51.93 -0.42 0.80 16 31 H 0.10 1.48 8.14 -51.92 -0.42 1.05 16 32 H 0.10 1.48 8.14 -51.93 -0.42 1.06 16 33 H 0.14 1.23 8.06 -52.49 -0.42 0.80 16 34 H 0.13 0.74 5.87 -52.48 -0.31 0.43 16 35 H 0.13 0.44 7.74 -51.92 -0.40 0.04 16 36 H 0.13 0.51 7.75 -51.92 -0.40 0.11 16 37 H 0.42 -0.02 9.10 45.56 0.41 0.40 16 38 H 0.14 1.16 8.06 -52.49 -0.42 0.74 16 39 H 0.14 1.50 8.06 -52.49 -0.42 1.08 16 LS Contribution 361.03 15.07 5.44 5.44 Total: -1.00 -35.15 361.03 -8.55 -43.70 By element: Atomic # 1 Polarization: 0.74 SS G_CDS: -4.04 Total: -3.30 kcal Atomic # 6 Polarization: -10.45 SS G_CDS: -2.04 Total: -12.49 kcal Atomic # 7 Polarization: -26.48 SS G_CDS: 0.74 Total: -25.74 kcal Atomic # 8 Polarization: -20.34 SS G_CDS: -1.37 Total: -21.71 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.60 kcal Atomic # 16 Polarization: -0.24 SS G_CDS: -2.26 Total: -2.50 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -35.15 -8.55 -43.70 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608180517.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.382 kcal (2) G-P(sol) polarization free energy of solvation -35.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds