Wall clock time and date at job start Tue Mar 31 2020 13:35:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86796 * 120.00165 * 2 1 4 4 H 1.48501 * 109.46999 * 270.00211 * 3 2 1 5 5 H 1.48502 * 109.47361 * 29.99934 * 3 2 1 6 6 H 1.48501 * 109.47054 * 150.00096 * 3 2 1 7 7 C 1.37878 * 119.99766 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99961 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99954 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47494 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47657 * 179.97438 * 10 9 7 12 12 C 1.50699 * 109.47475 * 180.02562 * 11 10 9 13 13 O 1.20833 * 119.99839 * 359.97438 * 12 11 10 14 14 O 1.34226 * 120.00288 * 180.02562 * 12 11 10 15 15 C 1.35996 * 117.00429 * 175.08583 * 14 12 11 16 16 C 1.38736 * 119.97511 * 256.81787 * 15 14 12 17 17 C 1.38068 * 120.02150 * 179.76211 * 16 15 14 18 18 C 1.38945 * 119.97685 * 0.50874 * 17 16 15 19 19 S 1.76198 * 120.02417 * 179.72092 * 18 17 16 20 20 C 1.81397 * 103.00265 * 0.02562 * 19 18 17 21 21 C 1.50700 * 109.47380 * 179.97438 * 20 19 18 22 22 O 1.20817 * 119.99604 * 0.02562 * 21 20 19 23 23 O 1.34225 * 120.00233 * 179.97438 * 21 20 19 24 24 C 1.38946 * 119.94904 * 359.74721 * 18 17 16 25 25 C 1.38064 * 119.97241 * 359.97438 * 24 18 17 26 26 H 0.96998 * 119.99664 * 359.97438 * 1 2 3 27 27 H 1.09000 * 109.47438 * 59.99414 * 9 7 2 28 28 H 1.09005 * 109.47473 * 299.99902 * 9 7 2 29 29 H 1.08995 * 109.46892 * 59.99559 * 10 9 7 30 30 H 1.09005 * 109.46655 * 300.00372 * 10 9 7 31 31 H 1.09008 * 109.47115 * 59.99617 * 11 10 9 32 32 H 1.09003 * 109.46961 * 300.00057 * 11 10 9 33 33 H 1.07999 * 119.98687 * 359.97438 * 16 15 14 34 34 H 1.08008 * 120.01000 * 180.23287 * 17 16 15 35 35 H 1.09001 * 109.47039 * 299.99948 * 20 19 18 36 36 H 1.09000 * 109.46965 * 59.99439 * 20 19 18 37 37 H 0.96697 * 117.00501 * 179.97438 * 23 21 20 38 38 H 1.08000 * 120.01262 * 179.97438 * 24 18 17 39 39 H 1.07997 * 119.98217 * 179.97438 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 6 2.2451 -3.6622 -0.0015 11 6 1.4801 -4.9871 -0.0020 12 6 2.4593 -6.1327 -0.0011 13 8 3.6473 -5.9119 -0.0006 14 8 2.0118 -7.3981 -0.0019 15 6 2.9443 -8.3827 -0.1048 16 6 3.1281 -9.0398 -1.3128 17 6 4.0778 -10.0362 -1.4197 18 6 4.8424 -10.3880 -0.3142 19 16 6.0497 -11.6644 -0.4473 20 6 5.9065 -12.1826 -2.1797 21 6 6.8924 -13.2883 -2.4565 22 8 7.6168 -13.6862 -1.5753 23 8 6.9649 -13.8317 -3.6817 24 6 4.6537 -9.7329 0.8966 25 6 3.7074 -8.7329 0.9996 26 1 -0.4849 0.8401 0.0004 27 1 0.6246 -2.5563 -0.8919 28 1 0.6239 -2.5575 0.8880 29 1 2.8711 -3.6048 0.8890 30 1 2.8725 -3.6040 -0.8910 31 1 0.8537 -5.0447 -0.8923 32 1 0.8530 -5.0450 0.8877 33 1 2.5304 -8.7694 -2.1708 34 1 4.2234 -10.5450 -2.3613 35 1 4.8949 -12.5414 -2.3692 36 1 6.1193 -11.3350 -2.8312 37 1 7.6128 -14.5377 -3.8113 38 1 5.2471 -10.0058 1.7567 39 1 3.5603 -8.2239 1.9407 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608180517.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:35:25 Heat of formation + Delta-G solvation = -172.469691 kcal Electronic energy + Delta-G solvation = -22891.237316 eV Core-core repulsion = 19082.439239 eV Total energy + Delta-G solvation = -3808.798077 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.091 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.38748 -41.28219 -39.85452 -37.98128 -37.24804 -36.19240 -34.12267 -32.62687 -31.79422 -31.17684 -29.89332 -26.43746 -24.44698 -24.27943 -22.93786 -22.52015 -21.45458 -19.49768 -19.22142 -18.90333 -18.62655 -17.91592 -17.80948 -17.36303 -17.27399 -16.49603 -16.37628 -15.99819 -15.69996 -15.18123 -14.84733 -14.65873 -14.61275 -14.26497 -14.15772 -13.94773 -13.75683 -13.39302 -13.15097 -13.00783 -12.66607 -12.66269 -12.57473 -12.45195 -11.96310 -11.87877 -11.76231 -11.59054 -11.44048 -11.34936 -11.21185 -10.69595 -10.53477 -10.19110 -8.51053 -8.19685 -6.29383 -0.23664 0.02897 0.17581 1.01532 1.03993 1.13277 1.41096 1.41593 1.52863 1.64962 1.99726 2.42060 2.54787 3.13867 3.60291 3.67552 3.78684 3.84870 4.04762 4.06966 4.12363 4.17316 4.21057 4.32615 4.44887 4.67053 4.80490 4.89141 4.89718 5.02771 5.03197 5.14363 5.20850 5.30739 5.47178 5.53352 5.69409 5.73433 5.86678 6.26568 6.75026 6.82547 6.86125 7.39252 8.91618 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.029020 B = 0.001741 C = 0.001713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.608258 B =16074.836963 C =16339.998507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.004 3.996 3 Si 0.961 3.039 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.268 1.268 7 C -0.547 4.547 8 H 0.053 0.947 9 C 0.024 3.976 10 C -0.087 4.087 11 C -0.101 4.101 12 C 0.467 3.533 13 O -0.521 6.521 14 O -0.294 6.294 15 C 0.052 3.948 16 C -0.103 4.103 17 C -0.116 4.116 18 C -0.101 4.101 19 S -0.056 6.056 20 C -0.128 4.128 21 C 0.507 3.493 22 O -0.537 6.537 23 O -0.501 6.501 24 C -0.090 4.090 25 C -0.113 4.113 26 H 0.264 0.736 27 H 0.006 0.994 28 H 0.005 0.995 29 H 0.048 0.952 30 H 0.049 0.951 31 H 0.126 0.874 32 H 0.123 0.877 33 H 0.154 0.846 34 H 0.167 0.833 35 H 0.160 0.840 36 H 0.155 0.845 37 H 0.436 0.564 38 H 0.148 0.852 39 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.912 -30.305 -6.583 32.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.194 4.194 3 Si 0.785 3.215 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.193 1.193 7 C -0.585 4.585 8 H 0.071 0.929 9 C -0.013 4.013 10 C -0.124 4.124 11 C -0.139 4.139 12 C 0.313 3.687 13 O -0.408 6.408 14 O -0.209 6.209 15 C 0.008 3.992 16 C -0.123 4.123 17 C -0.139 4.139 18 C -0.213 4.213 19 S 0.187 5.813 20 C -0.276 4.276 21 C 0.349 3.651 22 O -0.427 6.427 23 O -0.315 6.315 24 C -0.113 4.113 25 C -0.133 4.133 26 H 0.073 0.927 27 H 0.024 0.976 28 H 0.023 0.977 29 H 0.066 0.934 30 H 0.068 0.932 31 H 0.144 0.856 32 H 0.141 0.859 33 H 0.171 0.829 34 H 0.185 0.815 35 H 0.178 0.822 36 H 0.173 0.827 37 H 0.299 0.701 38 H 0.165 0.835 39 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 9.894 -30.502 -5.519 32.538 hybrid contribution -0.148 1.185 -0.713 1.391 sum 9.746 -29.317 -6.232 31.517 Atomic orbital electron populations 1.70064 1.07444 1.27765 1.51495 1.25882 0.95802 1.02999 0.94759 0.85515 0.78626 0.78839 0.78483 1.19784 1.20488 1.19296 1.21667 0.93409 0.92653 1.50767 0.92856 1.19023 0.94199 0.92013 0.96054 1.21291 0.97947 0.92065 1.01142 1.21565 0.96802 0.87867 1.07620 1.24748 0.89766 0.83349 0.70873 1.90674 1.19685 1.84812 1.45651 1.84688 1.37983 1.14820 1.83442 1.18953 0.93689 0.91277 0.95238 1.21355 0.98139 0.96644 0.96116 1.21374 0.95496 0.98406 0.98648 1.22078 1.00867 1.01059 0.97327 1.86393 1.44823 1.39092 1.11029 1.23465 1.04237 1.00824 0.99055 1.22252 0.81333 0.81372 0.80152 1.90803 1.43157 1.61586 1.47137 1.84435 1.61868 1.53647 1.31585 1.20751 0.97937 0.95342 0.97314 1.21385 0.95221 0.97935 0.98740 0.92692 0.97585 0.97680 0.93355 0.93240 0.85625 0.85878 0.82865 0.81520 0.82208 0.82728 0.70083 0.83452 0.84882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.23 13.29 21.45 0.28 -54.95 16 2 C 0.00 0.22 5.46 84.65 0.46 0.68 16 3 Si 0.96 44.34 29.54 68.60 2.03 46.37 16 4 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 5 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 6 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 7 C -0.55 -31.18 9.11 25.60 0.23 -30.94 16 8 H 0.05 2.99 7.74 -2.91 -0.02 2.97 16 9 C 0.02 1.23 4.97 29.85 0.15 1.37 16 10 C -0.09 -3.56 4.44 30.59 0.14 -3.42 16 11 C -0.10 -3.13 5.81 29.85 0.17 -2.95 16 12 C 0.47 14.69 7.83 71.24 0.56 15.25 16 13 O -0.52 -19.70 15.47 21.94 0.34 -19.36 16 14 O -0.29 -8.09 10.02 4.10 0.04 -8.04 16 15 C 0.05 1.31 5.14 22.51 0.12 1.42 16 16 C -0.10 -2.00 9.98 22.35 0.22 -1.78 16 17 C -0.12 -1.74 9.36 22.40 0.21 -1.53 16 18 C -0.10 -1.76 6.11 22.61 0.14 -1.62 16 19 S -0.06 -0.87 21.06 -56.49 -1.19 -2.06 16 20 C -0.13 -0.97 4.93 71.24 0.35 -0.62 16 21 C 0.51 5.45 8.35 71.24 0.59 6.05 16 22 O -0.54 -10.21 16.62 21.99 0.37 -9.85 16 23 O -0.50 -2.55 13.42 -51.37 -0.69 -3.24 16 24 C -0.09 -1.82 9.79 22.40 0.22 -1.60 16 25 C -0.11 -2.68 9.56 22.35 0.21 -2.47 16 26 H 0.26 14.78 8.31 -92.71 -0.77 14.01 16 27 H 0.01 0.30 8.14 -2.39 -0.02 0.29 16 28 H 0.00 0.26 8.14 -2.38 -0.02 0.24 16 29 H 0.05 2.05 8.10 -2.39 -0.02 2.04 16 30 H 0.05 2.09 8.10 -2.38 -0.02 2.07 16 31 H 0.13 3.37 8.14 -2.38 -0.02 3.35 16 32 H 0.12 3.37 8.14 -2.39 -0.02 3.35 16 33 H 0.15 2.38 8.06 -2.91 -0.02 2.35 16 34 H 0.17 1.15 5.87 -2.91 -0.02 1.14 16 35 H 0.16 0.37 7.74 -2.39 -0.02 0.36 16 36 H 0.15 0.55 7.75 -2.39 -0.02 0.53 16 37 H 0.44 -1.09 9.10 -74.06 -0.67 -1.77 16 38 H 0.15 2.50 8.06 -2.91 -0.02 2.48 16 39 H 0.13 3.07 8.06 -2.91 -0.02 3.05 16 Total: -1.00 -76.83 361.03 5.37 -71.46 By element: Atomic # 1 Polarization: 1.42 SS G_CDS: 0.41 Total: 1.83 kcal Atomic # 6 Polarization: -25.94 SS G_CDS: 3.78 Total: -22.16 kcal Atomic # 7 Polarization: -55.23 SS G_CDS: 0.28 Total: -54.95 kcal Atomic # 8 Polarization: -40.54 SS G_CDS: 0.06 Total: -40.49 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.37 kcal Atomic # 16 Polarization: -0.87 SS G_CDS: -1.19 Total: -2.06 kcal Total: -76.83 5.37 -71.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608180517.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.009 kcal (2) G-P(sol) polarization free energy of solvation -76.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds