Wall clock time and date at job start Tue Mar 31 2020 14:36:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86807 * 119.99797 * 2 1 4 4 H 1.48497 * 109.46778 * 269.99684 * 3 2 1 5 5 H 1.48497 * 109.46977 * 30.00016 * 3 2 1 6 6 H 1.48501 * 109.46977 * 149.99917 * 3 2 1 7 7 C 1.37877 * 120.00339 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99418 * 0.02562 * 7 2 1 9 9 C 1.50696 * 120.00310 * 179.97438 * 7 2 1 10 10 N 1.46493 * 109.47051 * 180.02562 * 9 7 2 11 11 C 1.34777 * 120.00194 * 180.02562 * 10 9 7 12 12 O 1.21591 * 119.99596 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00722 * 180.02562 * 11 10 9 14 14 C 1.39939 * 120.00268 * 185.31586 * 13 11 10 15 15 C 1.38886 * 120.07195 * 33.26670 * 14 13 11 16 16 C 1.38095 * 119.92728 * 179.97438 * 15 14 13 17 17 C 1.38299 * 120.07037 * 0.26497 * 16 15 14 18 18 C 1.38259 * 120.14247 * 359.45685 * 17 16 15 19 19 C 1.50697 * 119.96511 * 180.27037 * 18 17 16 20 20 S 1.81401 * 109.47215 * 270.27487 * 19 18 17 21 21 C 1.81407 * 103.00059 * 180.02562 * 20 19 18 22 22 C 1.50695 * 109.47252 * 180.02562 * 21 20 19 23 23 O 1.20830 * 119.99924 * 359.97438 * 22 21 20 24 24 O 1.34222 * 119.99912 * 180.02562 * 22 21 20 25 25 C 1.38140 * 120.06808 * 0.55088 * 18 17 16 26 26 H 0.97003 * 119.99887 * 359.97438 * 1 2 3 27 27 H 1.09003 * 109.46892 * 60.00478 * 9 7 2 28 28 H 1.08996 * 109.47352 * 300.00570 * 9 7 2 29 29 H 0.96995 * 120.00503 * 0.02562 * 10 9 7 30 30 H 0.97002 * 119.99490 * 5.30739 * 13 11 10 31 31 H 1.08000 * 120.03615 * 359.97438 * 15 14 13 32 32 H 1.08005 * 119.96321 * 179.97438 * 16 15 14 33 33 H 1.08001 * 119.92704 * 179.72351 * 17 16 15 34 34 H 1.08996 * 109.47144 * 30.27487 * 19 18 17 35 35 H 1.08999 * 109.47034 * 150.27723 * 19 18 17 36 36 H 1.09000 * 109.46496 * 299.99828 * 21 20 19 37 37 H 1.08994 * 109.47149 * 59.99799 * 21 20 19 38 38 H 0.96708 * 116.99845 * 179.97438 * 24 22 21 39 39 H 1.07999 * 120.03513 * 179.74996 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0000 10 7 3.9998 -2.5752 0.0001 11 6 5.3249 -2.8215 0.0001 12 8 6.1150 -1.8973 -0.0004 13 7 5.7743 -4.0921 -0.0003 14 6 7.1452 -4.3496 0.1121 15 6 7.9509 -3.5109 0.8713 16 6 9.3032 -3.7681 0.9806 17 6 9.8565 -4.8562 0.3305 18 6 9.0562 -5.6962 -0.4214 19 6 9.6622 -6.8842 -1.1231 20 16 10.2005 -6.3951 -2.7849 21 6 10.8894 -7.9317 -3.4595 22 6 11.3889 -7.6861 -4.8599 23 8 11.2899 -6.5872 -5.3526 24 8 11.9428 -8.6882 -5.5603 25 6 7.7027 -5.4444 -0.5348 26 1 -0.4850 0.8401 0.0004 27 1 3.8752 -0.6796 0.8895 28 1 3.8746 -0.6807 -0.8904 29 1 3.3696 -3.3124 0.0001 30 1 5.1473 -4.8282 -0.0783 31 1 7.5202 -2.6586 1.3757 32 1 9.9304 -3.1160 1.5705 33 1 10.9152 -5.0526 0.4139 34 1 10.5198 -7.2435 -0.5545 35 1 8.9193 -7.6781 -1.2009 36 1 11.7162 -8.2652 -2.8325 37 1 10.1155 -8.6991 -3.4788 38 1 12.2481 -8.4824 -6.4545 39 1 7.0787 -6.0987 -1.1256 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608184769.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:06 Heat of formation + Delta-G solvation = -90.244984 kcal Electronic energy + Delta-G solvation = -23102.205438 eV Core-core repulsion = 19329.265643 eV Total energy + Delta-G solvation = -3772.939795 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.098 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.63051 -40.35816 -38.66456 -36.64724 -34.98375 -34.24739 -32.72279 -32.29283 -31.00082 -29.86376 -27.70867 -27.13124 -23.09875 -22.71530 -22.28248 -21.40026 -20.16826 -18.65421 -18.40074 -17.65044 -16.96628 -16.65897 -16.41922 -16.25576 -16.17414 -15.55750 -14.85587 -14.80068 -14.39255 -14.22551 -13.93255 -13.81048 -13.69027 -13.29592 -13.12617 -12.96179 -12.62694 -12.38984 -12.16262 -12.04013 -11.73158 -11.32301 -11.15710 -11.01821 -10.80268 -10.47816 -10.15229 -9.99348 -9.66826 -9.50261 -8.81627 -8.79120 -8.33196 -8.06857 -7.86717 -6.23355 -4.26031 0.59179 1.34894 1.51257 1.65635 2.13166 2.56375 3.01614 3.27019 3.34179 3.41744 3.50733 3.93706 4.32091 4.34118 4.36594 4.51416 4.55064 4.71647 4.71860 4.96288 5.06461 5.12135 5.16360 5.35528 5.52984 5.66561 5.88868 5.94367 6.31896 6.33217 6.51025 6.59689 6.69059 7.05024 7.08637 7.14867 7.27986 7.32570 7.44885 8.21358 8.54636 8.74799 9.01403 9.36444 10.88405 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.019197 B = 0.002091 C = 0.001991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.197511 B =13388.440816 C =14058.019271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.078 3.922 3 Si 0.877 3.123 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.260 1.260 7 C -0.545 4.545 8 H 0.080 0.920 9 C 0.237 3.763 10 N -0.715 5.715 11 C 0.693 3.307 12 O -0.584 6.584 13 N -0.694 5.694 14 C 0.183 3.817 15 C -0.113 4.113 16 C -0.099 4.099 17 C -0.125 4.125 18 C -0.063 4.063 19 C -0.056 4.056 20 S -0.166 6.166 21 C -0.114 4.114 22 C 0.495 3.505 23 O -0.489 6.489 24 O -0.514 6.514 25 C -0.134 4.134 26 H 0.268 0.732 27 H 0.026 0.974 28 H 0.021 0.979 29 H 0.395 0.605 30 H 0.405 0.595 31 H 0.140 0.860 32 H 0.126 0.874 33 H 0.122 0.878 34 H 0.093 0.907 35 H 0.092 0.908 36 H 0.122 0.878 37 H 0.123 0.877 38 H 0.416 0.584 39 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.242 -21.163 -3.019 31.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.126 4.126 3 Si 0.703 3.297 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.184 1.184 7 C -0.583 4.583 8 H 0.098 0.902 9 C 0.115 3.885 10 N -0.366 5.366 11 C 0.393 3.607 12 O -0.462 6.462 13 N -0.342 5.342 14 C 0.086 3.914 15 C -0.134 4.134 16 C -0.118 4.118 17 C -0.145 4.145 18 C -0.065 4.065 19 C -0.203 4.203 20 S 0.063 5.937 21 C -0.262 4.262 22 C 0.335 3.665 23 O -0.375 6.375 24 O -0.327 6.327 25 C -0.157 4.157 26 H 0.078 0.922 27 H 0.044 0.956 28 H 0.039 0.961 29 H 0.228 0.772 30 H 0.240 0.760 31 H 0.158 0.842 32 H 0.144 0.856 33 H 0.140 0.860 34 H 0.112 0.888 35 H 0.111 0.889 36 H 0.140 0.860 37 H 0.141 0.859 38 H 0.276 0.724 39 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 23.451 -18.934 -3.297 30.320 hybrid contribution -0.087 -0.955 -0.166 0.973 sum 23.364 -19.888 -3.463 30.877 Atomic orbital electron populations 1.69876 1.06208 1.27486 1.49285 1.24778 0.94805 0.99183 0.93817 0.86813 0.80570 0.83161 0.79132 1.19789 1.20878 1.18432 1.21062 0.88407 0.95264 1.53530 0.90229 1.19433 0.95010 0.77178 0.96910 1.45450 1.03366 1.11491 1.76329 1.16116 0.83912 0.82246 0.78455 1.90896 1.55006 1.42719 1.57545 1.42776 1.05845 1.07894 1.77645 1.17457 0.83172 0.95431 0.95299 1.21357 0.93798 1.00224 0.98021 1.21003 0.94634 0.96921 0.99259 1.20900 0.99362 0.95410 0.98875 1.18709 0.92940 0.96147 0.98733 1.22401 1.03577 0.99216 0.95154 1.88162 1.78440 1.12367 1.14778 1.23072 1.05782 1.03409 0.93981 1.22281 0.74684 0.82078 0.87491 1.90821 1.51768 1.24885 1.70045 1.84470 1.72608 1.42462 1.33188 1.20663 0.94592 0.99610 1.00885 0.92209 0.95623 0.96098 0.77190 0.75990 0.84237 0.85595 0.86012 0.88837 0.88901 0.85953 0.85911 0.72390 0.85607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.30 13.96 55.43 0.77 -25.53 16 2 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 3 Si 0.88 21.38 27.47 -169.99 -4.67 16.72 16 4 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.26 -6.29 6.54 56.52 0.37 -5.92 16 7 C -0.54 -14.80 9.83 -34.44 -0.34 -15.14 16 8 H 0.08 2.24 7.84 -52.49 -0.41 1.83 16 9 C 0.24 5.79 4.50 -5.20 -0.02 5.77 16 10 N -0.71 -14.31 5.55 -66.42 -0.37 -14.67 16 11 C 0.69 13.37 8.30 -86.92 -0.72 12.65 16 12 O -0.58 -13.40 14.03 5.29 0.07 -13.32 16 13 N -0.69 -10.09 5.35 -14.22 -0.08 -10.16 16 14 C 0.18 2.58 6.28 -83.69 -0.53 2.06 16 15 C -0.11 -1.66 8.66 -39.39 -0.34 -2.00 16 16 C -0.10 -1.19 10.04 -39.61 -0.40 -1.59 16 17 C -0.12 -1.30 9.70 -39.55 -0.38 -1.68 16 18 C -0.06 -0.64 5.14 -104.65 -0.54 -1.18 16 19 C -0.06 -0.40 6.07 36.00 0.22 -0.19 16 20 S -0.17 -1.60 20.86 -107.50 -2.24 -3.85 16 21 C -0.11 -0.67 6.54 36.00 0.24 -0.43 16 22 C 0.49 3.89 8.35 36.00 0.30 4.19 16 23 O -0.49 -5.93 16.62 -18.75 -0.31 -6.24 16 24 O -0.51 -2.57 13.42 -39.24 -0.53 -3.10 16 25 C -0.13 -1.54 9.62 -39.39 -0.38 -1.92 16 26 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 27 H 0.03 0.66 7.20 -51.93 -0.37 0.29 16 28 H 0.02 0.54 7.57 -51.93 -0.39 0.14 16 29 H 0.39 6.81 8.34 -40.82 -0.34 6.47 16 30 H 0.40 4.44 8.83 -40.82 -0.36 4.08 16 31 H 0.14 2.37 6.41 -52.49 -0.34 2.03 16 32 H 0.13 1.24 8.06 -52.48 -0.42 0.82 16 33 H 0.12 0.99 8.06 -52.49 -0.42 0.56 16 34 H 0.09 0.49 8.09 -51.93 -0.42 0.07 16 35 H 0.09 0.52 8.08 -51.92 -0.42 0.10 16 36 H 0.12 0.43 8.14 -51.92 -0.42 0.01 16 37 H 0.12 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.42 0.49 9.10 45.56 0.41 0.90 16 39 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 LS Contribution 356.72 15.07 5.38 5.38 Total: -1.00 -36.55 356.72 -8.88 -45.44 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: -3.92 Total: 6.71 kcal Atomic # 6 Polarization: 5.62 SS G_CDS: -2.99 Total: 2.63 kcal Atomic # 7 Polarization: -50.70 SS G_CDS: 0.33 Total: -50.37 kcal Atomic # 8 Polarization: -21.90 SS G_CDS: -0.76 Total: -22.66 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -4.67 Total: 16.72 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.24 Total: -3.85 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -36.55 -8.88 -45.44 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608184769.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.809 kcal (2) G-P(sol) polarization free energy of solvation -36.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds