Wall clock time and date at job start Tue Mar 31 2020 14:36:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86807 * 119.99797 * 2 1 4 4 H 1.48497 * 109.46778 * 269.99684 * 3 2 1 5 5 H 1.48497 * 109.46977 * 30.00016 * 3 2 1 6 6 H 1.48501 * 109.46977 * 149.99917 * 3 2 1 7 7 C 1.37877 * 120.00339 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99418 * 0.02562 * 7 2 1 9 9 C 1.50696 * 120.00310 * 179.97438 * 7 2 1 10 10 N 1.46493 * 109.47051 * 180.02562 * 9 7 2 11 11 C 1.34777 * 120.00194 * 180.02562 * 10 9 7 12 12 O 1.21591 * 119.99596 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00722 * 180.02562 * 11 10 9 14 14 C 1.39939 * 120.00268 * 185.31586 * 13 11 10 15 15 C 1.38886 * 120.07195 * 33.26670 * 14 13 11 16 16 C 1.38095 * 119.92728 * 179.97438 * 15 14 13 17 17 C 1.38299 * 120.07037 * 0.26497 * 16 15 14 18 18 C 1.38259 * 120.14247 * 359.45685 * 17 16 15 19 19 C 1.50697 * 119.96511 * 180.27037 * 18 17 16 20 20 S 1.81401 * 109.47215 * 270.27487 * 19 18 17 21 21 C 1.81407 * 103.00059 * 180.02562 * 20 19 18 22 22 C 1.50695 * 109.47252 * 180.02562 * 21 20 19 23 23 O 1.20830 * 119.99924 * 359.97438 * 22 21 20 24 24 O 1.34222 * 119.99912 * 180.02562 * 22 21 20 25 25 C 1.38140 * 120.06808 * 0.55088 * 18 17 16 26 26 H 0.97003 * 119.99887 * 359.97438 * 1 2 3 27 27 H 1.09003 * 109.46892 * 60.00478 * 9 7 2 28 28 H 1.08996 * 109.47352 * 300.00570 * 9 7 2 29 29 H 0.96995 * 120.00503 * 0.02562 * 10 9 7 30 30 H 0.97002 * 119.99490 * 5.30739 * 13 11 10 31 31 H 1.08000 * 120.03615 * 359.97438 * 15 14 13 32 32 H 1.08005 * 119.96321 * 179.97438 * 16 15 14 33 33 H 1.08001 * 119.92704 * 179.72351 * 17 16 15 34 34 H 1.08996 * 109.47144 * 30.27487 * 19 18 17 35 35 H 1.08999 * 109.47034 * 150.27723 * 19 18 17 36 36 H 1.09000 * 109.46496 * 299.99828 * 21 20 19 37 37 H 1.08994 * 109.47149 * 59.99799 * 21 20 19 38 38 H 0.96708 * 116.99845 * 179.97438 * 24 22 21 39 39 H 1.07999 * 120.03513 * 179.74996 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0000 10 7 3.9998 -2.5752 0.0001 11 6 5.3249 -2.8215 0.0001 12 8 6.1150 -1.8973 -0.0004 13 7 5.7743 -4.0921 -0.0003 14 6 7.1452 -4.3496 0.1121 15 6 7.9509 -3.5109 0.8713 16 6 9.3032 -3.7681 0.9806 17 6 9.8565 -4.8562 0.3305 18 6 9.0562 -5.6962 -0.4214 19 6 9.6622 -6.8842 -1.1231 20 16 10.2005 -6.3951 -2.7849 21 6 10.8894 -7.9317 -3.4595 22 6 11.3889 -7.6861 -4.8599 23 8 11.2899 -6.5872 -5.3526 24 8 11.9428 -8.6882 -5.5603 25 6 7.7027 -5.4444 -0.5348 26 1 -0.4850 0.8401 0.0004 27 1 3.8752 -0.6796 0.8895 28 1 3.8746 -0.6807 -0.8904 29 1 3.3696 -3.3124 0.0001 30 1 5.1473 -4.8282 -0.0783 31 1 7.5202 -2.6586 1.3757 32 1 9.9304 -3.1160 1.5705 33 1 10.9152 -5.0526 0.4139 34 1 10.5198 -7.2435 -0.5545 35 1 8.9193 -7.6781 -1.2009 36 1 11.7162 -8.2652 -2.8325 37 1 10.1155 -8.6991 -3.4788 38 1 12.2481 -8.4824 -6.4545 39 1 7.0787 -6.0987 -1.1256 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608184769.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:06 Heat of formation + Delta-G solvation = -117.440648 kcal Electronic energy + Delta-G solvation = -23103.384730 eV Core-core repulsion = 19329.265643 eV Total energy + Delta-G solvation = -3774.119088 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.098 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.64870 -41.19571 -39.83054 -37.18346 -36.45446 -35.83795 -34.47461 -33.43284 -31.47740 -31.09740 -29.42714 -27.95391 -24.70853 -23.45798 -23.17339 -22.79094 -21.53324 -19.95905 -19.19342 -18.70497 -18.32822 -17.67709 -17.25025 -17.19057 -16.87203 -16.71886 -16.53412 -16.10748 -15.81271 -15.13935 -15.03379 -14.77823 -14.47814 -14.38713 -14.30761 -14.24233 -13.99454 -13.44875 -13.29344 -13.04559 -12.72680 -12.66969 -12.61270 -12.19887 -11.93774 -11.80040 -11.67648 -11.46337 -11.16794 -10.96620 -10.92703 -10.04913 -9.68837 -9.00829 -8.71706 -8.40686 -6.47716 -0.09969 0.39285 0.77130 1.11006 1.33139 1.35195 1.48015 1.55557 1.68850 2.06479 2.13903 2.27901 2.93130 2.95641 3.31688 3.65320 3.91806 4.03913 4.16475 4.19386 4.32479 4.34057 4.41302 4.51427 4.63874 4.70122 4.75552 5.02051 5.02802 5.21531 5.36215 5.40881 5.43590 5.54168 5.59174 5.61019 5.93737 6.09204 6.22217 6.54042 6.89275 7.05626 7.18533 7.51595 8.73809 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.019197 B = 0.002091 C = 0.001991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.197511 B =13388.440816 C =14058.019271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.028 3.972 3 Si 0.936 3.064 4 H -0.266 1.266 5 H -0.272 1.272 6 H -0.260 1.260 7 C -0.546 4.546 8 H 0.061 0.939 9 C 0.251 3.749 10 N -0.714 5.714 11 C 0.694 3.306 12 O -0.623 6.623 13 N -0.675 5.675 14 C 0.153 3.847 15 C -0.141 4.141 16 C -0.105 4.105 17 C -0.117 4.117 18 C -0.061 4.061 19 C -0.038 4.038 20 S -0.250 6.250 21 C -0.095 4.095 22 C 0.497 3.503 23 O -0.542 6.542 24 O -0.505 6.505 25 C -0.129 4.129 26 H 0.273 0.727 27 H 0.014 0.986 28 H 0.010 0.990 29 H 0.408 0.592 30 H 0.422 0.578 31 H 0.107 0.893 32 H 0.141 0.859 33 H 0.151 0.849 34 H 0.122 0.878 35 H 0.116 0.884 36 H 0.154 0.846 37 H 0.151 0.849 38 H 0.432 0.568 39 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.554 -23.741 -3.210 35.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.173 4.173 3 Si 0.760 3.240 4 H -0.191 1.191 5 H -0.197 1.197 6 H -0.184 1.184 7 C -0.584 4.584 8 H 0.079 0.921 9 C 0.126 3.874 10 N -0.367 5.367 11 C 0.395 3.605 12 O -0.503 6.503 13 N -0.324 5.324 14 C 0.058 3.942 15 C -0.163 4.163 16 C -0.123 4.123 17 C -0.138 4.138 18 C -0.063 4.063 19 C -0.185 4.185 20 S -0.021 6.021 21 C -0.243 4.243 22 C 0.339 3.661 23 O -0.432 6.432 24 O -0.319 6.319 25 C -0.151 4.151 26 H 0.082 0.918 27 H 0.032 0.968 28 H 0.028 0.972 29 H 0.243 0.757 30 H 0.261 0.739 31 H 0.125 0.875 32 H 0.159 0.841 33 H 0.169 0.831 34 H 0.140 0.860 35 H 0.134 0.866 36 H 0.171 0.829 37 H 0.168 0.832 38 H 0.295 0.705 39 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 25.781 -21.610 -3.492 33.821 hybrid contribution -0.677 -0.356 -0.157 0.781 sum 25.105 -21.966 -3.649 33.557 Atomic orbital electron populations 1.69972 1.07615 1.28638 1.50574 1.25563 0.95549 1.02592 0.93589 0.85875 0.79294 0.79403 0.79431 1.19120 1.19712 1.18439 1.21251 0.89742 0.94683 1.52748 0.92056 1.19005 0.93183 0.79399 0.95765 1.45120 1.04217 1.10342 1.77016 1.16171 0.83058 0.83373 0.77946 1.90869 1.55802 1.44531 1.59145 1.42441 1.06801 1.06540 1.76613 1.17698 0.82594 0.96925 0.96986 1.21270 0.95396 1.00102 0.99541 1.21212 0.93613 0.97888 0.99619 1.21271 1.00821 0.94237 0.97471 1.19094 0.92404 0.96871 0.97914 1.22393 1.05083 0.98021 0.92979 1.88482 1.79465 1.16695 1.17501 1.23083 1.07332 1.01079 0.92781 1.22704 0.73658 0.81525 0.88181 1.90814 1.54058 1.26972 1.71336 1.84441 1.71853 1.41294 1.34305 1.20903 0.95594 0.98594 1.00044 0.91797 0.96795 0.97171 0.75650 0.73922 0.87504 0.84129 0.83117 0.85983 0.86566 0.82870 0.83164 0.70532 0.83516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.50 13.96 21.45 0.30 -55.20 16 2 C 0.03 1.57 5.47 84.65 0.46 2.03 16 3 Si 0.94 44.43 27.47 68.60 1.88 46.32 16 4 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 5 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 6 H -0.26 -12.27 6.54 99.48 0.65 -11.62 16 7 C -0.55 -30.20 9.83 25.60 0.25 -29.95 16 8 H 0.06 3.53 7.84 -2.91 -0.02 3.51 16 9 C 0.25 12.44 4.50 85.63 0.38 12.83 16 10 N -0.71 -28.99 5.55 -482.31 -2.68 -31.67 16 11 C 0.69 27.31 8.30 179.05 1.49 28.80 16 12 O -0.62 -29.55 14.03 -4.00 -0.06 -29.61 16 13 N -0.68 -19.54 5.35 -317.17 -1.70 -21.23 16 14 C 0.15 4.27 6.28 38.15 0.24 4.51 16 15 C -0.14 -4.28 8.66 22.39 0.19 -4.09 16 16 C -0.10 -2.43 10.04 22.25 0.22 -2.20 16 17 C -0.12 -2.14 9.70 22.29 0.22 -1.92 16 18 C -0.06 -1.06 5.14 -19.88 -0.10 -1.16 16 19 C -0.04 -0.39 6.07 71.23 0.43 0.05 16 20 S -0.25 -4.21 20.86 -56.49 -1.18 -5.39 16 21 C -0.09 -0.76 6.54 71.23 0.47 -0.30 16 22 C 0.50 6.74 8.35 71.23 0.59 7.34 16 23 O -0.54 -12.83 16.62 21.95 0.36 -12.46 16 24 O -0.50 -3.70 13.42 -51.34 -0.69 -4.39 16 25 C -0.13 -2.69 9.62 22.39 0.22 -2.48 16 26 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 27 H 0.01 0.73 7.20 -2.39 -0.02 0.72 16 28 H 0.01 0.54 7.57 -2.39 -0.02 0.52 16 29 H 0.41 14.17 8.34 -92.71 -0.77 13.40 16 30 H 0.42 8.87 8.83 -92.71 -0.82 8.05 16 31 H 0.11 3.89 6.41 -2.91 -0.02 3.87 16 32 H 0.14 2.68 8.06 -2.91 -0.02 2.66 16 33 H 0.15 1.86 8.06 -2.91 -0.02 1.83 16 34 H 0.12 0.61 8.09 -2.39 -0.02 0.59 16 35 H 0.12 0.70 8.08 -2.39 -0.02 0.68 16 36 H 0.15 0.32 8.14 -2.39 -0.02 0.30 16 37 H 0.15 0.43 8.14 -2.39 -0.02 0.41 16 38 H 0.43 0.11 9.10 -74.05 -0.67 -0.56 16 39 H 0.15 2.37 8.06 -2.91 -0.02 2.35 16 Total: -1.00 -82.43 356.72 0.12 -82.31 By element: Atomic # 1 Polarization: 19.07 SS G_CDS: -1.20 Total: 17.88 kcal Atomic # 6 Polarization: 8.38 SS G_CDS: 5.06 Total: 13.44 kcal Atomic # 7 Polarization: -104.03 SS G_CDS: -4.08 Total: -108.10 kcal Atomic # 8 Polarization: -46.07 SS G_CDS: -0.38 Total: -46.45 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 1.88 Total: 46.32 kcal Atomic # 16 Polarization: -4.21 SS G_CDS: -1.18 Total: -5.39 kcal Total: -82.43 0.12 -82.31 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608184769.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.128 kcal (2) G-P(sol) polarization free energy of solvation -82.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds