Wall clock time and date at job start Tue Mar 31 2020 14:27:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13607 * 1 3 3 C 1.43194 * 179.97438 * 2 1 4 4 C 1.38873 * 120.73664 * 79.95742 * 3 2 1 5 5 C 1.40993 * 118.70437 * 180.02562 * 4 3 2 6 6 C 1.47388 * 119.89064 * 179.97438 * 5 4 3 7 7 O 1.21525 * 119.99946 * 180.02562 * 6 5 4 8 8 O 1.34761 * 120.00213 * 0.02562 * 6 5 4 9 9 C 1.38179 * 120.21659 * 0.02562 * 5 4 3 10 10 N 1.34286 * 121.57273 * 359.95908 * 9 5 4 11 11 C 1.46500 * 119.35091 * 179.97438 * 10 9 5 12 12 C 1.50705 * 109.46911 * 89.99755 * 11 10 9 13 13 C 1.38639 * 119.74788 * 269.73177 * 12 11 10 14 14 C 1.37619 * 120.24763 * 179.72342 * 13 12 11 15 15 C 1.40721 * 119.74206 * 0.57159 * 14 13 12 16 16 C 1.41394 * 120.24490 * 179.68376 * 15 14 13 17 17 H 1.07992 * 120.00076 * 155.30460 * 16 15 14 18 18 C 1.39948 * 119.99591 * 335.30884 * 16 15 14 19 19 N 1.30817 * 120.00144 * 342.23162 * 18 16 15 20 20 Si 1.86800 * 119.99622 * 162.23253 * 18 16 15 21 21 H 1.48505 * 109.47252 * 94.66536 * 20 18 16 22 22 H 1.48500 * 109.47110 * 214.66008 * 20 18 16 23 23 H 1.48500 * 109.47281 * 334.66249 * 20 18 16 24 24 C 1.40720 * 119.51060 * 359.69646 * 15 14 13 25 25 C 1.37613 * 119.74778 * 0.02562 * 24 15 14 26 26 C 1.34644 * 121.30663 * 0.27373 * 10 9 5 27 27 O 1.21829 * 120.16646 * 179.74762 * 26 10 9 28 28 H 1.07994 * 120.65025 * 0.04438 * 4 3 2 29 29 H 0.96699 * 117.00171 * 179.97438 * 8 6 5 30 30 H 1.08004 * 119.21314 * 179.97438 * 9 5 4 31 31 H 1.09001 * 109.46816 * 330.00056 * 11 10 9 32 32 H 1.08999 * 109.47321 * 209.99892 * 11 10 9 33 33 H 1.08001 * 119.87770 * 359.97438 * 13 12 11 34 34 H 1.08000 * 120.12863 * 180.27621 * 14 13 12 35 35 H 0.97008 * 119.99807 * 180.02562 * 19 18 16 36 36 H 1.08000 * 120.12709 * 180.02562 * 24 15 14 37 37 H 1.08000 * 119.87766 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2779 -0.2072 -1.1754 5 6 4.6869 -0.1984 -1.1260 6 6 5.4664 -0.4168 -2.3577 7 8 6.6809 -0.4100 -2.3174 8 8 4.8322 -0.6239 -3.5286 9 6 5.3395 0.0132 0.0734 10 7 4.6630 0.2155 1.2157 11 6 5.4044 0.4345 2.4602 12 6 5.6600 1.9088 2.6398 13 6 6.8175 2.4738 2.1270 14 6 7.0585 3.8200 2.2802 15 6 6.1305 4.6213 2.9709 16 6 6.3707 6.0043 3.1402 17 1 5.5434 6.6814 3.2928 18 6 7.6807 6.4957 3.1101 19 7 8.6896 5.6794 3.2750 20 14 7.9887 8.3174 2.8343 21 1 8.1329 8.9992 4.1457 22 1 9.2337 8.4950 2.0446 23 1 6.8443 8.9063 2.0934 24 6 4.9618 4.0358 3.4920 25 6 4.7387 2.6886 3.3218 26 6 3.3168 0.2152 1.2411 27 8 2.7242 0.3963 2.2900 28 1 2.7608 -0.3720 -2.1090 29 1 5.3859 -0.7619 -4.3093 30 1 6.4193 0.0163 0.0927 31 1 6.3554 -0.0963 2.4147 32 1 4.8202 0.0618 3.3015 33 1 7.5308 1.8559 1.6018 34 1 7.9588 4.2590 1.8760 35 1 9.5976 6.0202 3.2544 36 1 4.2427 4.6415 4.0234 37 1 3.8426 2.2370 3.7213 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608187878.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:47 Heat of formation + Delta-G solvation = -48.260068 kcal Electronic energy + Delta-G solvation = -25678.778852 eV Core-core repulsion = 21772.215708 eV Total energy + Delta-G solvation = -3906.563144 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.094 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.65019 -40.11814 -37.84869 -37.15970 -36.66014 -36.22535 -34.88266 -33.72404 -30.86898 -30.55676 -29.48755 -27.64332 -25.61897 -24.57464 -23.81518 -22.24316 -21.21674 -20.34245 -19.36183 -18.15490 -17.60573 -17.43584 -17.28083 -16.41137 -16.35566 -15.74487 -15.66651 -15.35308 -14.35269 -14.20687 -13.99757 -13.87938 -13.53123 -13.36955 -13.29216 -12.73787 -12.68876 -12.42097 -12.35366 -12.12037 -11.96764 -11.81071 -11.67954 -11.33105 -11.18359 -10.92963 -10.91160 -10.67677 -10.30561 -10.20374 -9.75452 -9.58223 -9.32203 -8.26617 -7.70151 -7.57388 -6.98307 -4.57663 0.20607 0.91751 1.92956 2.39896 2.59524 2.63949 2.88862 2.90567 2.96790 2.97741 3.03634 3.18079 3.67590 3.78082 3.82680 4.24875 4.37349 4.40919 4.57473 4.82885 5.08025 5.38913 5.45895 5.52057 5.58854 5.62476 5.78067 6.07125 6.10213 6.25030 6.26621 6.67439 6.77472 6.87441 7.05892 7.14636 7.40803 7.55049 7.62258 7.67879 7.71659 7.84054 7.86336 8.09388 8.42267 8.67815 8.74872 9.95270 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.012871 B = 0.003454 C = 0.003067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2174.837552 B = 8105.716999 C = 9125.771315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C 0.284 3.716 3 C -0.176 4.176 4 C 0.086 3.914 5 C -0.271 4.271 6 C 0.550 3.450 7 O -0.521 6.521 8 O -0.513 6.513 9 C 0.274 3.726 10 N -0.465 5.465 11 C 0.144 3.856 12 C -0.268 4.268 13 C -0.081 4.081 14 C -0.170 4.170 15 C 0.121 3.879 16 C -0.453 4.453 17 H 0.081 0.919 18 C 0.076 3.924 19 N -0.782 5.782 20 Si 0.909 3.091 21 H -0.268 1.268 22 H -0.273 1.273 23 H -0.259 1.259 24 C -0.231 4.231 25 C -0.054 4.054 26 C 0.541 3.459 27 O -0.500 6.500 28 H 0.156 0.844 29 H 0.417 0.583 30 H 0.185 0.815 31 H 0.095 0.905 32 H 0.103 0.897 33 H 0.089 0.911 34 H 0.120 0.880 35 H 0.284 0.716 36 H 0.094 0.906 37 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.147 -11.097 -10.037 14.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.100 5.100 2 C -0.030 4.030 3 C -0.184 4.184 4 C 0.062 3.938 5 C -0.278 4.278 6 C 0.395 3.605 7 O -0.412 6.412 8 O -0.325 6.325 9 C 0.133 3.867 10 N -0.167 5.167 11 C 0.028 3.972 12 C -0.270 4.270 13 C -0.100 4.100 14 C -0.189 4.189 15 C 0.118 3.882 16 C -0.481 4.481 17 H 0.099 0.901 18 C -0.143 4.143 19 N -0.406 5.406 20 Si 0.733 3.267 21 H -0.194 1.194 22 H -0.198 1.198 23 H -0.182 1.182 24 C -0.251 4.251 25 C -0.073 4.073 26 C 0.338 3.662 27 O -0.377 6.377 28 H 0.174 0.826 29 H 0.276 0.724 30 H 0.202 0.798 31 H 0.114 0.886 32 H 0.121 0.879 33 H 0.107 0.893 34 H 0.137 0.863 35 H 0.095 0.905 36 H 0.112 0.888 37 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -1.980 -10.907 -8.798 14.153 hybrid contribution 1.182 0.862 -0.618 1.588 sum -0.798 -10.046 -9.416 13.792 Atomic orbital electron populations 1.81210 1.11585 1.10155 1.07000 1.24591 0.91409 0.93225 0.93796 1.17503 0.86080 1.20814 0.93997 1.21833 0.92009 0.82775 0.97216 1.17966 0.92791 1.25612 0.91410 1.19952 0.85281 0.72231 0.82993 1.90940 1.14792 1.48764 1.86663 1.84512 1.45244 1.84020 1.18771 1.22498 0.99926 0.80206 0.84037 1.46135 1.08170 1.51981 1.10372 1.21084 0.95679 0.97268 0.83206 1.18848 1.00211 0.92277 1.15643 1.20498 0.95046 0.95484 0.98939 1.21277 1.01809 0.92592 1.03218 1.17714 0.90341 0.93133 0.86977 1.19736 0.92880 0.93265 1.42218 0.90086 1.25980 0.95782 1.00701 0.91881 1.69809 1.00480 1.37512 1.32834 0.86269 0.79063 0.81869 0.79477 1.19351 1.19805 1.18235 1.21006 1.01403 0.94124 1.08555 1.20528 0.96410 0.93985 0.96393 1.17910 0.80848 0.78228 0.89263 1.90944 1.66996 1.47751 1.31958 0.82614 0.72447 0.79805 0.88635 0.87904 0.89295 0.86270 0.90505 0.88773 0.88504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -7.00 18.54 41.84 0.78 -6.22 16 2 C 0.28 4.20 15.06 -22.47 -0.34 3.86 16 3 C -0.18 -2.24 5.93 -104.40 -0.62 -2.86 16 4 C 0.09 0.82 9.43 -38.30 -0.36 0.46 16 5 C -0.27 -2.61 5.86 -105.15 -0.62 -3.23 16 6 C 0.55 5.13 8.26 34.45 0.28 5.42 16 7 O -0.52 -6.28 17.05 -19.29 -0.33 -6.61 16 8 O -0.51 -3.28 12.69 -40.66 -0.52 -3.80 16 9 C 0.27 2.85 9.79 -16.50 -0.16 2.69 16 10 N -0.47 -5.99 2.53 -118.63 -0.30 -6.29 16 11 C 0.14 1.99 5.42 -5.19 -0.03 1.97 16 12 C -0.27 -5.00 5.48 -104.32 -0.57 -5.57 16 13 C -0.08 -1.60 9.67 -39.66 -0.38 -1.98 16 14 C -0.17 -3.99 8.70 -38.87 -0.34 -4.33 16 15 C 0.12 3.03 5.57 -106.82 -0.60 2.43 16 16 C -0.45 -11.34 9.05 -37.74 -0.34 -11.68 16 17 H 0.08 1.97 7.91 -52.49 -0.41 1.55 16 18 C 0.08 1.79 5.14 -17.34 -0.09 1.70 16 19 N -0.78 -18.78 10.97 55.55 0.61 -18.17 16 20 Si 0.91 17.54 29.59 -169.99 -5.03 12.51 16 21 H -0.27 -5.13 7.11 56.52 0.40 -4.73 16 22 H -0.27 -5.14 7.11 56.52 0.40 -4.74 16 23 H -0.26 -5.00 7.11 56.52 0.40 -4.60 16 24 C -0.23 -5.44 9.80 -38.87 -0.38 -5.82 16 25 C -0.05 -1.15 9.67 -39.66 -0.38 -1.54 16 26 C 0.54 8.11 7.58 -12.98 -0.10 8.01 16 27 O -0.50 -9.25 15.62 5.07 0.08 -9.17 16 28 H 0.16 1.09 7.65 -52.49 -0.40 0.69 16 29 H 0.42 0.89 9.11 45.56 0.42 1.31 16 30 H 0.18 1.60 7.47 -52.48 -0.39 1.21 16 31 H 0.10 1.00 7.91 -51.93 -0.41 0.59 16 32 H 0.10 1.45 7.30 -51.93 -0.38 1.08 16 33 H 0.09 1.48 8.06 -52.49 -0.42 1.06 16 34 H 0.12 2.91 6.18 -52.49 -0.32 2.59 16 35 H 0.28 6.16 8.30 -40.82 -0.34 5.83 16 36 H 0.09 2.14 8.06 -52.49 -0.42 1.72 16 37 H 0.10 2.00 7.49 -52.49 -0.39 1.60 16 LS Contribution 344.13 15.07 5.19 5.19 Total: -1.00 -31.04 344.13 -6.83 -37.87 By element: Atomic # 1 Polarization: 7.45 SS G_CDS: -2.28 Total: 5.17 kcal Atomic # 6 Polarization: -5.46 SS G_CDS: -5.02 Total: -10.48 kcal Atomic # 7 Polarization: -31.77 SS G_CDS: 1.08 Total: -30.68 kcal Atomic # 8 Polarization: -18.81 SS G_CDS: -0.77 Total: -19.57 kcal Atomic # 14 Polarization: 17.54 SS G_CDS: -5.03 Total: 12.51 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.04 -6.83 -37.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608187878.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.391 kcal (2) G-P(sol) polarization free energy of solvation -31.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds