Wall clock time and date at job start Tue Mar 31 2020 14:27:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13607 * 1 3 3 C 1.43194 * 179.97438 * 2 1 4 4 C 1.38873 * 120.73664 * 79.95742 * 3 2 1 5 5 C 1.40993 * 118.70437 * 180.02562 * 4 3 2 6 6 C 1.47388 * 119.89064 * 179.97438 * 5 4 3 7 7 O 1.21525 * 119.99946 * 180.02562 * 6 5 4 8 8 O 1.34761 * 120.00213 * 0.02562 * 6 5 4 9 9 C 1.38179 * 120.21659 * 0.02562 * 5 4 3 10 10 N 1.34286 * 121.57273 * 359.95908 * 9 5 4 11 11 C 1.46500 * 119.35091 * 179.97438 * 10 9 5 12 12 C 1.50705 * 109.46911 * 89.99755 * 11 10 9 13 13 C 1.38639 * 119.74788 * 269.73177 * 12 11 10 14 14 C 1.37619 * 120.24763 * 179.72342 * 13 12 11 15 15 C 1.40721 * 119.74206 * 0.57159 * 14 13 12 16 16 C 1.41394 * 120.24490 * 179.68376 * 15 14 13 17 17 H 1.07992 * 120.00076 * 155.30460 * 16 15 14 18 18 C 1.39948 * 119.99591 * 335.30884 * 16 15 14 19 19 N 1.30817 * 120.00144 * 342.23162 * 18 16 15 20 20 Si 1.86800 * 119.99622 * 162.23253 * 18 16 15 21 21 H 1.48505 * 109.47252 * 94.66536 * 20 18 16 22 22 H 1.48500 * 109.47110 * 214.66008 * 20 18 16 23 23 H 1.48500 * 109.47281 * 334.66249 * 20 18 16 24 24 C 1.40720 * 119.51060 * 359.69646 * 15 14 13 25 25 C 1.37613 * 119.74778 * 0.02562 * 24 15 14 26 26 C 1.34644 * 121.30663 * 0.27373 * 10 9 5 27 27 O 1.21829 * 120.16646 * 179.74762 * 26 10 9 28 28 H 1.07994 * 120.65025 * 0.04438 * 4 3 2 29 29 H 0.96699 * 117.00171 * 179.97438 * 8 6 5 30 30 H 1.08004 * 119.21314 * 179.97438 * 9 5 4 31 31 H 1.09001 * 109.46816 * 330.00056 * 11 10 9 32 32 H 1.08999 * 109.47321 * 209.99892 * 11 10 9 33 33 H 1.08001 * 119.87770 * 359.97438 * 13 12 11 34 34 H 1.08000 * 120.12863 * 180.27621 * 14 13 12 35 35 H 0.97008 * 119.99807 * 180.02562 * 19 18 16 36 36 H 1.08000 * 120.12709 * 180.02562 * 24 15 14 37 37 H 1.08000 * 119.87766 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2779 -0.2072 -1.1754 5 6 4.6869 -0.1984 -1.1260 6 6 5.4664 -0.4168 -2.3577 7 8 6.6809 -0.4100 -2.3174 8 8 4.8322 -0.6239 -3.5286 9 6 5.3395 0.0132 0.0734 10 7 4.6630 0.2155 1.2157 11 6 5.4044 0.4345 2.4602 12 6 5.6600 1.9088 2.6398 13 6 6.8175 2.4738 2.1270 14 6 7.0585 3.8200 2.2802 15 6 6.1305 4.6213 2.9709 16 6 6.3707 6.0043 3.1402 17 1 5.5434 6.6814 3.2928 18 6 7.6807 6.4957 3.1101 19 7 8.6896 5.6794 3.2750 20 14 7.9887 8.3174 2.8343 21 1 8.1329 8.9992 4.1457 22 1 9.2337 8.4950 2.0446 23 1 6.8443 8.9063 2.0934 24 6 4.9618 4.0358 3.4920 25 6 4.7387 2.6886 3.3218 26 6 3.3168 0.2152 1.2411 27 8 2.7242 0.3963 2.2900 28 1 2.7608 -0.3720 -2.1090 29 1 5.3859 -0.7619 -4.3093 30 1 6.4193 0.0163 0.0927 31 1 6.3554 -0.0963 2.4147 32 1 4.8202 0.0618 3.3015 33 1 7.5308 1.8559 1.6018 34 1 7.9588 4.2590 1.8760 35 1 9.5976 6.0202 3.2544 36 1 4.2427 4.6415 4.0234 37 1 3.8426 2.2370 3.7213 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608187878.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:47 Heat of formation + Delta-G solvation = -66.583930 kcal Electronic energy + Delta-G solvation = -25679.573434 eV Core-core repulsion = 21772.215708 eV Total energy + Delta-G solvation = -3907.357726 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.094 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.68053 -40.88128 -39.46584 -38.27400 -37.83202 -36.90592 -36.18161 -35.20761 -32.35662 -31.60544 -31.19047 -29.09369 -26.64362 -26.00676 -24.76837 -23.29596 -22.92661 -21.82426 -20.38379 -19.27484 -18.94046 -18.47171 -18.21270 -17.53328 -17.32145 -17.16265 -16.64106 -16.42842 -15.79488 -15.61931 -15.47870 -15.12121 -14.64574 -14.41389 -14.29947 -14.27639 -13.88530 -13.77361 -13.58202 -13.41219 -13.37366 -13.18058 -12.88940 -12.72624 -12.47734 -12.37498 -12.22145 -11.72597 -11.68616 -11.42454 -11.26018 -11.12557 -11.01926 -9.42751 -9.33982 -9.27284 -8.70369 -6.40784 -0.70229 0.05069 0.65530 1.11449 1.20335 1.37969 1.42016 1.47836 1.52835 1.68237 1.95713 2.18550 2.28869 2.64272 2.67152 2.83272 3.33094 3.59023 3.60912 3.74549 3.98045 4.11980 4.15228 4.43290 4.50378 4.59481 4.63774 4.76463 4.82855 4.99927 5.11168 5.13666 5.31799 5.40627 5.63067 5.69536 5.72340 5.90481 6.05555 6.14060 6.35500 6.44099 6.62284 6.65497 6.89059 6.97357 7.11287 8.26064 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.012871 B = 0.003454 C = 0.003067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2174.837552 B = 8105.716999 C = 9125.771315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.466 5.466 2 C 0.300 3.700 3 C -0.200 4.200 4 C 0.125 3.875 5 C -0.261 4.261 6 C 0.562 3.438 7 O -0.546 6.546 8 O -0.503 6.503 9 C 0.277 3.723 10 N -0.466 5.466 11 C 0.150 3.850 12 C -0.244 4.244 13 C -0.072 4.072 14 C -0.192 4.192 15 C 0.091 3.909 16 C -0.500 4.500 17 H 0.069 0.931 18 C 0.042 3.958 19 N -0.812 5.812 20 Si 0.978 3.022 21 H -0.264 1.264 22 H -0.260 1.260 23 H -0.263 1.263 24 C -0.256 4.256 25 C -0.064 4.064 26 C 0.535 3.465 27 O -0.549 6.549 28 H 0.188 0.812 29 H 0.438 0.562 30 H 0.211 0.789 31 H 0.144 0.856 32 H 0.100 0.900 33 H 0.133 0.867 34 H 0.106 0.894 35 H 0.292 0.708 36 H 0.083 0.917 37 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.452 -13.032 -12.591 18.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.143 5.143 2 C -0.014 4.014 3 C -0.208 4.208 4 C 0.100 3.900 5 C -0.268 4.268 6 C 0.407 3.593 7 O -0.439 6.439 8 O -0.317 6.317 9 C 0.138 3.862 10 N -0.167 5.167 11 C 0.032 3.968 12 C -0.245 4.245 13 C -0.091 4.091 14 C -0.212 4.212 15 C 0.088 3.912 16 C -0.528 4.528 17 H 0.087 0.913 18 C -0.175 4.175 19 N -0.437 5.437 20 Si 0.798 3.202 21 H -0.189 1.189 22 H -0.184 1.184 23 H -0.187 1.187 24 C -0.276 4.276 25 C -0.083 4.083 26 C 0.333 3.667 27 O -0.429 6.429 28 H 0.206 0.794 29 H 0.301 0.699 30 H 0.228 0.772 31 H 0.162 0.838 32 H 0.118 0.882 33 H 0.151 0.849 34 H 0.124 0.876 35 H 0.103 0.897 36 H 0.101 0.899 37 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -0.372 -12.869 -11.412 17.205 hybrid contribution 0.657 1.202 0.020 1.370 sum 0.285 -11.668 -11.392 16.310 Atomic orbital electron populations 1.81213 1.12783 1.12110 1.08214 1.24894 0.91802 0.92013 0.92696 1.17346 0.85065 1.24074 0.94354 1.22127 0.91887 0.78882 0.97092 1.18122 0.92755 1.24178 0.91732 1.19693 0.84599 0.71560 0.83425 1.90953 1.15843 1.49936 1.87125 1.84461 1.45373 1.83137 1.18777 1.22939 1.01006 0.79015 0.83226 1.45709 1.07463 1.52647 1.10884 1.21073 0.97997 0.93886 0.83848 1.19294 0.98372 0.94815 1.12065 1.20881 0.95801 0.94422 0.97966 1.21306 1.01387 0.94334 1.04156 1.18005 0.91323 0.93775 0.88081 1.19893 0.93703 0.93746 1.45494 0.91264 1.26666 0.94934 1.04820 0.91046 1.69829 1.00961 1.39281 1.33665 0.85259 0.78966 0.76506 0.79440 1.18864 1.18412 1.18696 1.21117 1.01486 0.95392 1.09614 1.20706 0.97255 0.93345 0.96987 1.18234 0.81493 0.77606 0.89321 1.90925 1.67994 1.50418 1.33599 0.79447 0.69918 0.77240 0.83815 0.88211 0.84926 0.87621 0.89740 0.89863 0.88387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -15.44 18.54 19.00 0.35 -15.08 16 2 C 0.30 8.65 15.06 88.33 1.33 9.98 16 3 C -0.20 -4.72 5.93 -19.72 -0.12 -4.84 16 4 C 0.12 1.87 9.43 23.10 0.22 2.09 16 5 C -0.26 -3.86 5.86 -20.21 -0.12 -3.98 16 6 C 0.56 7.78 8.26 70.23 0.58 8.36 16 7 O -0.55 -10.74 17.05 19.75 0.34 -10.40 16 8 O -0.50 -3.87 12.69 -56.72 -0.72 -4.59 16 9 C 0.28 4.51 9.79 84.30 0.83 5.34 16 10 N -0.47 -10.54 2.53 -647.46 -1.64 -12.18 16 11 C 0.15 3.64 5.42 85.63 0.46 4.10 16 12 C -0.24 -8.66 5.48 -19.67 -0.11 -8.77 16 13 C -0.07 -2.70 9.67 22.22 0.21 -2.49 16 14 C -0.19 -9.14 8.70 22.73 0.20 -8.94 16 15 C 0.09 4.73 5.57 -21.29 -0.12 4.62 16 16 C -0.50 -26.48 9.05 23.46 0.21 -26.26 16 17 H 0.07 3.64 7.91 -2.91 -0.02 3.61 16 18 C 0.04 2.03 5.14 85.26 0.44 2.47 16 19 N -0.81 -39.91 10.97 21.83 0.24 -39.67 16 20 Si 0.98 36.79 29.59 68.60 2.03 38.82 16 21 H -0.26 -9.64 7.11 99.48 0.71 -8.93 16 22 H -0.26 -9.13 7.11 99.48 0.71 -8.42 16 23 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 24 C -0.26 -12.69 9.80 22.73 0.22 -12.47 16 25 C -0.06 -2.76 9.67 22.22 0.21 -2.55 16 26 C 0.53 15.26 7.58 86.42 0.66 15.91 16 27 O -0.55 -20.39 15.62 -4.76 -0.07 -20.46 16 28 H 0.19 1.68 7.65 -2.91 -0.02 1.66 16 29 H 0.44 -0.28 9.11 -74.06 -0.67 -0.96 16 30 H 0.21 2.42 7.47 -2.91 -0.02 2.40 16 31 H 0.14 2.19 7.91 -2.39 -0.02 2.17 16 32 H 0.10 2.60 7.30 -2.39 -0.02 2.58 16 33 H 0.13 3.78 8.06 -2.91 -0.02 3.76 16 34 H 0.11 5.26 6.18 -2.91 -0.02 5.24 16 35 H 0.29 12.82 8.30 -92.70 -0.77 12.05 16 36 H 0.08 4.11 8.06 -2.91 -0.02 4.09 16 37 H 0.10 4.16 7.49 -2.91 -0.02 4.14 16 Total: -1.00 -72.97 344.13 6.12 -66.84 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: 0.49 Total: 14.15 kcal Atomic # 6 Polarization: -22.54 SS G_CDS: 5.11 Total: -17.43 kcal Atomic # 7 Polarization: -65.89 SS G_CDS: -1.05 Total: -66.93 kcal Atomic # 8 Polarization: -35.00 SS G_CDS: -0.46 Total: -35.46 kcal Atomic # 14 Polarization: 36.79 SS G_CDS: 2.03 Total: 38.82 kcal Total: -72.97 6.12 -66.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608187878.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.257 kcal (2) G-P(sol) polarization free energy of solvation -72.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds