Wall clock time and date at job start Tue Mar 31 2020 14:14:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31354 * 1 3 3 Si 1.86798 * 119.99869 * 2 1 4 4 H 1.48504 * 109.46968 * 274.93438 * 3 2 1 5 5 H 1.48493 * 109.47106 * 34.93262 * 3 2 1 6 6 H 1.48496 * 109.46768 * 154.93276 * 3 2 1 7 7 C 1.38999 * 119.99743 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00189 * 335.26412 * 7 2 1 9 9 N 1.36993 * 119.99672 * 155.26636 * 7 2 1 10 10 C 1.37750 * 126.45319 * 140.27069 * 9 7 2 11 11 C 1.46129 * 125.22963 * 359.97438 * 10 9 7 12 12 C 1.35386 * 120.00059 * 176.77091 * 11 10 9 13 13 C 1.46187 * 120.00130 * 180.27339 * 12 11 10 14 14 C 1.36371 * 125.66894 * 179.43970 * 13 12 11 15 15 C 1.41908 * 106.59563 * 179.85429 * 14 13 12 16 16 C 1.47333 * 126.77495 * 180.11592 * 15 14 13 17 17 O 1.21521 * 120.00375 * 0.32137 * 16 15 14 18 18 O 1.34760 * 119.99762 * 180.32156 * 16 15 14 19 19 C 1.37801 * 106.44804 * 0.41031 * 15 14 13 20 20 O 1.33717 * 108.37950 * 359.74492 * 19 15 14 21 21 N 1.31707 * 109.53785 * 180.24419 * 10 9 7 22 22 C 1.35459 * 109.65978 * 359.56356 * 21 10 9 23 23 C 1.39925 * 133.19188 * 180.12151 * 22 21 10 24 24 C 1.37644 * 119.77711 * 180.37718 * 23 22 21 25 25 C 1.38766 * 120.54284 * 359.95712 * 24 23 22 26 26 C 1.37972 * 120.46903 * 0.02818 * 25 24 23 27 27 C 1.38343 * 126.45793 * 320.24625 * 9 7 2 28 28 H 0.96995 * 119.99896 * 359.97438 * 1 2 3 29 29 H 1.07997 * 120.00207 * 356.77488 * 11 10 9 30 30 H 1.08000 * 119.99708 * 359.97438 * 12 11 10 31 31 H 1.08005 * 126.69893 * 359.97438 * 14 13 12 32 32 H 0.96702 * 116.99797 * 179.97438 * 18 16 15 33 33 H 1.08001 * 125.80663 * 179.78155 * 19 15 14 34 34 H 1.07995 * 120.11018 * 0.36229 * 23 22 21 35 35 H 1.08003 * 119.72623 * 179.97438 * 24 23 22 36 36 H 1.08002 * 119.76536 * 180.02562 * 25 24 23 37 37 H 1.08004 * 120.06483 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3135 0.0000 0.0000 3 14 2.2475 1.6177 0.0000 4 1 2.3907 2.1066 -1.3949 5 1 1.5010 2.6203 0.8017 6 1 3.5932 1.4123 0.5932 7 6 2.0085 -1.2038 -0.0005 8 1 1.5428 -2.0964 0.3904 9 7 3.2841 -1.2580 -0.4970 10 6 4.3368 -1.9751 0.0276 11 6 4.2729 -2.8140 1.2224 12 6 5.3578 -3.5260 1.6084 13 6 5.2921 -4.3698 2.8004 14 6 6.3069 -5.1407 3.2858 15 6 5.8080 -5.7817 4.4495 16 6 6.5387 -6.7155 5.3240 17 8 7.6938 -7.0012 5.0776 18 8 5.9259 -7.2528 6.3973 19 6 4.5032 -5.3635 4.5962 20 8 4.2161 -4.5199 3.5992 21 7 5.4110 -1.7840 -0.7100 22 6 5.1152 -0.9551 -1.7397 23 6 5.8687 -0.4365 -2.7986 24 6 5.2769 0.4101 -3.7084 25 6 3.9381 0.7535 -3.5850 26 6 3.1799 0.2514 -2.5474 27 6 3.7578 -0.6031 -1.6198 28 1 -0.4850 0.8400 0.0004 29 1 3.3603 -2.8660 1.7976 30 1 6.2703 -3.4743 1.0330 31 1 7.2975 -5.2419 2.8675 32 1 6.4458 -7.8603 6.9411 33 1 3.8277 -5.6653 5.3830 34 1 6.9111 -0.6995 -2.9016 35 1 5.8594 0.8103 -4.5252 36 1 3.4865 1.4185 -4.3062 37 1 2.1385 0.5233 -2.4573 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608190548.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:27 Heat of formation + Delta-G solvation = 12.323219 kcal Electronic energy + Delta-G solvation = -25229.518009 eV Core-core repulsion = 21325.581953 eV Total energy + Delta-G solvation = -3903.936056 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.094 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.70768 -41.11741 -40.02744 -36.63475 -36.26048 -34.49500 -33.80292 -33.23853 -32.04001 -29.84520 -29.49908 -27.55758 -25.43667 -24.77512 -23.74264 -21.62086 -21.22014 -21.17828 -20.30865 -19.03304 -18.22120 -17.93540 -17.48467 -16.40863 -16.40194 -16.00699 -15.83911 -15.50369 -15.06074 -14.68204 -14.38098 -14.29449 -13.60536 -13.32843 -13.28463 -13.14262 -12.90370 -12.82779 -12.21292 -11.84007 -11.83669 -11.63844 -11.35924 -11.28638 -11.11159 -10.91694 -10.52093 -10.44957 -10.28180 -10.09937 -9.90318 -9.15991 -8.96868 -8.31338 -7.51775 -7.15384 -7.01976 -4.74411 0.75162 1.11664 1.85154 2.33140 2.64107 2.71552 2.87507 2.91811 2.98815 3.07613 3.10062 3.74183 3.83417 3.94136 4.49306 4.50564 4.64358 4.66940 4.87991 5.07852 5.45940 5.50851 5.56849 5.61577 5.65177 5.78260 5.90571 6.12239 6.17049 6.20682 6.22324 6.29947 6.42501 6.53223 6.75127 6.80400 6.99642 7.04553 7.18359 7.34047 7.40895 7.68512 7.69460 7.76927 8.33670 8.77963 8.89225 9.89753 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.017554 B = 0.002981 C = 0.002627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.651543 B = 9389.257402 C =10657.729473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.808 5.808 2 C 0.087 3.913 3 Si 0.867 3.133 4 H -0.243 1.243 5 H -0.277 1.277 6 H -0.257 1.257 7 C -0.353 4.353 8 H 0.125 0.875 9 N -0.283 5.283 10 C 0.219 3.781 11 C -0.014 4.014 12 C -0.098 4.098 13 C 0.044 3.956 14 C -0.152 4.152 15 C -0.225 4.225 16 C 0.557 3.443 17 O -0.514 6.514 18 O -0.516 6.516 19 C 0.043 3.957 20 O -0.155 6.155 21 N -0.505 5.505 22 C 0.046 3.954 23 C -0.081 4.081 24 C -0.137 4.137 25 C -0.141 4.141 26 C -0.084 4.084 27 C 0.004 3.996 28 H 0.290 0.710 29 H 0.136 0.864 30 H 0.160 0.840 31 H 0.163 0.837 32 H 0.414 0.586 33 H 0.220 0.780 34 H 0.117 0.883 35 H 0.116 0.884 36 H 0.116 0.884 37 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.670 -5.937 6.152 10.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.436 5.436 2 C -0.130 4.130 3 Si 0.690 3.310 4 H -0.167 1.167 5 H -0.203 1.203 6 H -0.180 1.180 7 C -0.481 4.481 8 H 0.143 0.857 9 N 0.047 4.953 10 C -0.034 4.034 11 C -0.034 4.034 12 C -0.120 4.120 13 C -0.005 4.005 14 C -0.172 4.172 15 C -0.227 4.227 16 C 0.402 3.598 17 O -0.404 6.404 18 O -0.328 6.328 19 C -0.029 4.029 20 O -0.048 6.048 21 N -0.228 5.228 22 C -0.082 4.082 23 C -0.100 4.100 24 C -0.158 4.158 25 C -0.162 4.162 26 C -0.104 4.104 27 C -0.111 4.111 28 H 0.100 0.900 29 H 0.154 0.846 30 H 0.177 0.823 31 H 0.181 0.819 32 H 0.273 0.727 33 H 0.236 0.764 34 H 0.135 0.865 35 H 0.134 0.866 36 H 0.134 0.866 37 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 5.812 -5.854 6.041 10.225 hybrid contribution -0.301 0.658 0.480 0.868 sum 5.511 -5.196 6.522 9.995 Atomic orbital electron populations 1.69754 1.06740 1.30188 1.36891 1.25443 0.95181 0.99611 0.92724 0.87004 0.81224 0.81850 0.80897 1.16684 1.20255 1.18045 1.19334 0.86081 0.98864 1.43820 0.85737 1.41550 1.08437 1.30173 1.15103 1.21361 0.82779 1.02058 0.97231 1.21055 0.98552 0.92126 0.91632 1.21102 1.00720 0.97388 0.92786 1.20726 0.84384 1.01273 0.94134 1.21693 1.00824 0.99038 0.95596 1.19519 0.95737 1.06774 1.00715 1.19800 0.84022 0.77747 0.78240 1.90903 1.17973 1.59654 1.71857 1.84552 1.49230 1.60221 1.38840 1.25045 0.95834 0.90869 0.91187 1.84058 1.37864 1.51134 1.31781 1.70573 1.25157 1.20357 1.06693 1.18870 0.91818 1.00237 0.97255 1.20060 0.98618 0.98203 0.93165 1.20622 0.95064 1.00452 0.99665 1.20604 0.94364 1.02617 0.98641 1.20107 0.99793 0.96712 0.93764 1.18976 0.96067 1.04086 0.91955 0.89951 0.84612 0.82284 0.81915 0.72688 0.76373 0.86508 0.86578 0.86592 0.86398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -20.17 13.95 55.50 0.77 -19.40 16 2 C 0.09 2.15 4.86 -17.47 -0.08 2.06 16 3 Si 0.87 19.50 24.66 -169.99 -4.19 15.31 16 4 H -0.24 -5.19 5.55 56.52 0.31 -4.87 16 5 H -0.28 -6.00 7.11 56.52 0.40 -5.59 16 6 H -0.26 -6.24 7.11 56.52 0.40 -5.84 16 7 C -0.35 -8.84 9.81 -14.96 -0.15 -8.99 16 8 H 0.13 3.17 8.06 -52.49 -0.42 2.75 16 9 N -0.28 -6.90 2.45 -57.50 -0.14 -7.04 16 10 C 0.22 4.94 7.59 -153.99 -1.17 3.77 16 11 C -0.01 -0.26 9.40 -37.43 -0.35 -0.61 16 12 C -0.10 -1.57 9.70 -37.41 -0.36 -1.94 16 13 C 0.04 0.63 6.96 -37.07 -0.26 0.37 16 14 C -0.15 -2.04 10.67 -38.85 -0.41 -2.46 16 15 C -0.22 -2.76 6.16 -104.95 -0.65 -3.40 16 16 C 0.56 6.51 8.33 34.43 0.29 6.80 16 17 O -0.51 -7.55 17.72 -19.28 -0.34 -7.89 16 18 O -0.52 -4.05 13.27 -40.65 -0.54 -4.59 16 19 C 0.04 0.45 11.97 30.57 0.37 0.82 16 20 O -0.15 -2.10 10.21 5.74 0.06 -2.04 16 21 N -0.51 -11.48 10.75 -8.87 -0.10 -11.58 16 22 C 0.05 1.04 7.21 -84.69 -0.61 0.43 16 23 C -0.08 -1.54 10.11 -39.17 -0.40 -1.93 16 24 C -0.14 -2.35 10.01 -39.60 -0.40 -2.74 16 25 C -0.14 -2.59 10.03 -39.48 -0.40 -2.99 16 26 C -0.08 -1.82 6.93 -39.49 -0.27 -2.09 16 27 C 0.00 0.11 5.29 -83.80 -0.44 -0.34 16 28 H 0.29 6.61 8.31 -40.82 -0.34 6.27 16 29 H 0.14 2.46 7.61 -52.49 -0.40 2.06 16 30 H 0.16 2.50 7.69 -52.49 -0.40 2.10 16 31 H 0.16 2.03 8.06 -52.48 -0.42 1.60 16 32 H 0.41 1.36 9.11 45.56 0.42 1.78 16 33 H 0.22 1.42 8.06 -52.49 -0.42 0.99 16 34 H 0.12 1.93 8.06 -52.49 -0.42 1.51 16 35 H 0.12 1.56 8.06 -52.48 -0.42 1.14 16 36 H 0.12 1.76 8.06 -52.49 -0.42 1.34 16 37 H 0.12 2.60 5.88 -52.48 -0.31 2.29 16 LS Contribution 334.76 15.07 5.04 5.04 Total: -1.00 -30.70 334.76 -7.18 -37.89 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: -2.46 Total: 7.52 kcal Atomic # 6 Polarization: -7.94 SS G_CDS: -5.30 Total: -13.24 kcal Atomic # 7 Polarization: -38.56 SS G_CDS: 0.54 Total: -38.02 kcal Atomic # 8 Polarization: -13.69 SS G_CDS: -0.82 Total: -14.51 kcal Atomic # 14 Polarization: 19.50 SS G_CDS: -4.19 Total: 15.31 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -30.70 -7.18 -37.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608190548.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.212 kcal (2) G-P(sol) polarization free energy of solvation -30.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.889 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds