Wall clock time and date at job start Tue Mar 31 2020 14:14:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31343 * 1 3 3 Si 1.86803 * 120.00067 * 2 1 4 4 H 1.48493 * 109.47327 * 270.00616 * 3 2 1 5 5 H 1.48509 * 109.46955 * 30.00644 * 3 2 1 6 6 H 1.48504 * 109.47219 * 150.00248 * 3 2 1 7 7 C 1.39002 * 120.00166 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99834 * 187.15068 * 7 2 1 9 9 N 1.36987 * 119.99913 * 7.15277 * 7 2 1 10 10 C 1.37747 * 126.45317 * 219.52970 * 9 7 2 11 11 C 1.46131 * 125.23267 * 359.97438 * 10 9 7 12 12 C 1.35383 * 119.99844 * 222.44321 * 11 10 9 13 13 C 1.46197 * 120.00095 * 7.52176 * 12 11 10 14 14 C 1.36361 * 125.66900 * 187.31305 * 13 12 11 15 15 C 1.41909 * 106.59274 * 180.02562 * 14 13 12 16 16 C 1.47340 * 126.77313 * 179.97438 * 15 14 13 17 17 O 1.21523 * 120.00412 * 359.97438 * 16 15 14 18 18 O 1.34764 * 120.00089 * 179.97438 * 16 15 14 19 19 C 1.37797 * 106.45401 * 359.97438 * 15 14 13 20 20 O 1.33723 * 108.37602 * 359.73730 * 19 15 14 21 21 N 1.31718 * 109.53582 * 179.71311 * 10 9 7 22 22 C 1.35447 * 109.66318 * 0.26870 * 21 10 9 23 23 C 1.39918 * 133.20025 * 180.02562 * 22 21 10 24 24 C 1.37656 * 119.78733 * 179.97438 * 23 22 21 25 25 C 1.38769 * 120.53388 * 0.02562 * 24 23 22 26 26 C 1.37967 * 120.47486 * 359.97204 * 25 24 23 27 27 C 1.38353 * 126.45550 * 39.69602 * 9 7 2 28 28 H 0.97003 * 120.00124 * 4.98571 * 1 2 3 29 29 H 1.07992 * 119.99865 * 42.43783 * 11 10 9 30 30 H 1.07995 * 120.00204 * 187.51768 * 12 11 10 31 31 H 1.08002 * 126.70336 * 0.02562 * 14 13 12 32 32 H 0.96696 * 117.00135 * 180.02562 * 18 16 15 33 33 H 1.07996 * 125.81305 * 180.02562 * 19 15 14 34 34 H 1.07999 * 120.10856 * 359.94391 * 23 22 21 35 35 H 1.07990 * 119.73385 * 180.02562 * 24 23 22 36 36 H 1.08000 * 119.76501 * 179.97438 * 25 24 23 37 37 H 1.08003 * 120.07209 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3134 0.0000 0.0000 3 14 2.2475 1.6178 0.0000 4 1 2.4949 2.0465 -1.4000 5 1 1.4449 2.6527 0.7002 6 1 3.5451 1.4402 0.7000 7 6 2.0085 -1.2038 -0.0005 8 1 3.0821 -1.2074 0.1159 9 7 1.3316 -2.3854 -0.1488 10 6 1.5883 -3.5646 0.5153 11 6 2.6434 -3.7611 1.5071 12 6 3.3883 -4.8914 1.4880 13 6 3.2516 -5.8384 0.3826 14 6 3.8333 -7.0698 0.3140 15 6 3.4337 -7.6384 -0.9233 16 6 3.8102 -8.9627 -1.4480 17 8 4.5368 -9.6893 -0.7992 18 8 3.3488 -9.3684 -2.6474 19 6 2.6241 -6.7076 -1.5372 20 8 2.5242 -5.6418 -0.7358 21 7 0.7329 -4.4863 0.1231 22 6 -0.1054 -3.9650 -0.8043 23 6 -1.1763 -4.4943 -1.5327 24 6 -1.8557 -3.6976 -2.4264 25 6 -1.4870 -2.3727 -2.6116 26 6 -0.4337 -1.8338 -1.9019 27 6 0.2633 -2.6202 -0.9961 28 1 -0.4850 0.8369 -0.0730 29 1 2.8289 -3.0047 2.2552 30 1 4.0836 -5.0936 2.2893 31 1 4.4733 -7.5237 1.0562 32 1 3.6227 -10.2452 -2.9495 33 1 2.1473 -6.8215 -2.4995 34 1 -1.4686 -5.5248 -1.3947 35 1 -2.6824 -4.1070 -2.9878 36 1 -2.0284 -1.7590 -3.3162 37 1 -0.1525 -0.8017 -2.0509 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608190551.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:30 Heat of formation + Delta-G solvation = 22.387761 kcal Electronic energy + Delta-G solvation = -26536.609020 eV Core-core repulsion = 22633.109395 eV Total energy + Delta-G solvation = -3903.499624 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.094 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.26064 -40.66118 -39.76927 -36.28076 -36.02302 -34.42111 -33.64048 -32.81428 -31.26697 -29.35056 -29.02343 -27.37829 -25.31887 -24.40668 -23.38390 -21.32435 -21.18017 -20.61801 -20.21207 -19.01723 -17.88456 -17.68394 -16.80013 -16.20526 -15.89871 -15.72801 -15.40255 -15.14388 -14.90089 -14.69501 -14.18225 -13.67026 -13.59190 -13.09632 -12.96532 -12.87509 -12.56592 -12.08151 -11.94452 -11.72946 -11.60812 -11.48385 -11.31771 -11.00044 -10.80673 -10.71999 -10.64374 -10.35465 -10.01841 -9.64061 -9.52935 -8.97629 -8.74100 -7.85592 -7.30801 -6.79288 -6.67929 -4.68973 1.13356 1.44193 2.16460 2.69233 2.92838 2.94670 2.97639 2.99126 3.03461 3.32306 3.36827 3.69889 4.06699 4.45670 4.66194 4.85545 4.95649 5.05818 5.22187 5.23422 5.62270 5.73632 5.88562 5.92176 5.93994 6.11442 6.22837 6.36971 6.42862 6.45758 6.58585 6.65000 6.78427 6.83366 6.88161 6.99471 7.16357 7.40705 7.48268 7.60228 7.81785 7.94370 7.99532 8.10013 8.50320 9.09083 9.27910 10.12201 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.014930 B = 0.004178 C = 0.003513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.915074 B = 6700.814225 C = 7969.017659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.053 3.947 3 Si 0.934 3.066 4 H -0.269 1.269 5 H -0.276 1.276 6 H -0.262 1.262 7 C -0.352 4.352 8 H 0.108 0.892 9 N -0.275 5.275 10 C 0.215 3.785 11 C -0.020 4.020 12 C -0.096 4.096 13 C 0.043 3.957 14 C -0.160 4.160 15 C -0.240 4.240 16 C 0.559 3.441 17 O -0.523 6.523 18 O -0.516 6.516 19 C 0.053 3.947 20 O -0.105 6.105 21 N -0.493 5.493 22 C 0.035 3.965 23 C -0.092 4.092 24 C -0.140 4.140 25 C -0.161 4.161 26 C -0.034 4.034 27 C 0.051 3.949 28 H 0.282 0.718 29 H 0.139 0.861 30 H 0.153 0.847 31 H 0.156 0.844 32 H 0.411 0.589 33 H 0.210 0.790 34 H 0.107 0.893 35 H 0.107 0.893 36 H 0.107 0.893 37 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.987 -6.705 -2.989 8.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C -0.160 4.160 3 Si 0.758 3.242 4 H -0.194 1.194 5 H -0.201 1.201 6 H -0.186 1.186 7 C -0.481 4.481 8 H 0.126 0.874 9 N 0.055 4.945 10 C -0.041 4.041 11 C -0.039 4.039 12 C -0.117 4.117 13 C -0.007 4.007 14 C -0.179 4.179 15 C -0.243 4.243 16 C 0.405 3.595 17 O -0.414 6.414 18 O -0.328 6.328 19 C -0.021 4.021 20 O 0.005 5.995 21 N -0.217 5.217 22 C -0.091 4.091 23 C -0.112 4.112 24 C -0.161 4.161 25 C -0.182 4.182 26 C -0.054 4.054 27 C -0.065 4.065 28 H 0.093 0.907 29 H 0.157 0.843 30 H 0.170 0.830 31 H 0.173 0.827 32 H 0.269 0.731 33 H 0.227 0.773 34 H 0.125 0.875 35 H 0.125 0.875 36 H 0.125 0.875 37 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 3.790 -6.710 -2.279 8.037 hybrid contribution 0.408 0.998 -0.428 1.160 sum 4.198 -5.712 -2.707 7.588 Atomic orbital electron populations 1.69975 1.06342 1.29565 1.39604 1.25685 0.95602 1.00649 0.94080 0.85807 0.79536 0.79658 0.79223 1.19424 1.20120 1.18621 1.19718 0.92785 0.81549 1.54039 0.87423 1.41235 1.21483 1.08132 1.23649 1.21440 0.99662 0.84248 0.98732 1.21145 0.90871 0.96571 0.95348 1.21225 1.01802 0.93155 0.95493 1.20533 0.95749 0.95691 0.88703 1.21568 1.04909 0.93998 0.97417 1.19412 1.10658 0.94783 0.99416 1.19891 0.76031 0.85628 0.77945 1.90864 1.35980 1.55622 1.58929 1.84586 1.71176 1.40717 1.36282 1.25100 0.96307 0.84698 0.96005 1.84574 1.52793 1.37141 1.24985 1.70578 1.06674 1.29322 1.15116 1.18868 0.98902 0.91528 0.99814 1.19900 0.95336 0.98647 0.97361 1.20501 1.00650 0.94428 1.00533 1.20598 0.99273 0.95517 1.02807 1.20098 0.93878 0.98238 0.93235 1.18788 0.95728 0.94945 0.97046 0.90678 0.84303 0.82984 0.82654 0.73059 0.77320 0.87517 0.87498 0.87538 0.86448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -20.49 10.13 55.50 0.56 -19.93 16 2 C 0.05 1.23 4.94 -17.48 -0.09 1.14 16 3 Si 0.93 17.74 29.56 -169.99 -5.03 12.71 16 4 H -0.27 -5.08 7.11 56.52 0.40 -4.68 16 5 H -0.28 -5.25 7.11 56.52 0.40 -4.85 16 6 H -0.26 -4.83 7.11 56.52 0.40 -4.43 16 7 C -0.35 -8.52 9.58 -14.96 -0.14 -8.67 16 8 H 0.11 2.44 7.84 -52.49 -0.41 2.03 16 9 N -0.28 -6.87 2.86 -57.50 -0.16 -7.04 16 10 C 0.22 4.95 6.22 -153.98 -0.96 3.99 16 11 C -0.02 -0.36 9.75 -37.44 -0.36 -0.72 16 12 C -0.10 -1.48 10.14 -37.41 -0.38 -1.86 16 13 C 0.04 0.74 6.58 -37.06 -0.24 0.50 16 14 C -0.16 -2.50 10.67 -38.85 -0.41 -2.91 16 15 C -0.24 -3.73 6.16 -104.95 -0.65 -4.38 16 16 C 0.56 8.04 8.33 34.43 0.29 8.33 16 17 O -0.52 -8.74 17.72 -19.28 -0.34 -9.08 16 18 O -0.52 -5.51 13.27 -40.67 -0.54 -6.05 16 19 C 0.05 0.84 11.97 30.57 0.37 1.20 16 20 O -0.11 -1.99 6.63 5.71 0.04 -1.96 16 21 N -0.49 -11.61 8.36 -8.87 -0.07 -11.68 16 22 C 0.03 0.83 7.21 -84.69 -0.61 0.22 16 23 C -0.09 -1.92 10.11 -39.17 -0.40 -2.32 16 24 C -0.14 -2.66 10.01 -39.60 -0.40 -3.06 16 25 C -0.16 -3.23 10.03 -39.48 -0.40 -3.63 16 26 C -0.03 -0.80 8.49 -39.50 -0.34 -1.14 16 27 C 0.05 1.28 6.10 -83.79 -0.51 0.77 16 28 H 0.28 6.51 8.31 -40.82 -0.34 6.17 16 29 H 0.14 2.23 8.06 -52.49 -0.42 1.81 16 30 H 0.15 1.69 8.06 -52.49 -0.42 1.27 16 31 H 0.16 2.13 8.06 -52.49 -0.42 1.71 16 32 H 0.41 2.35 9.11 45.56 0.42 2.76 16 33 H 0.21 2.65 8.06 -52.49 -0.42 2.23 16 34 H 0.11 1.99 8.06 -52.49 -0.42 1.56 16 35 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 36 H 0.11 1.83 8.06 -52.49 -0.42 1.40 16 37 H 0.12 2.81 6.38 -52.48 -0.33 2.47 16 LS Contribution 334.19 15.07 5.04 5.04 Total: -1.00 -31.65 334.19 -8.16 -39.82 By element: Atomic # 1 Polarization: 13.13 SS G_CDS: -2.43 Total: 10.70 kcal Atomic # 6 Polarization: -7.30 SS G_CDS: -5.23 Total: -12.53 kcal Atomic # 7 Polarization: -38.97 SS G_CDS: 0.32 Total: -38.65 kcal Atomic # 8 Polarization: -16.25 SS G_CDS: -0.84 Total: -17.09 kcal Atomic # 14 Polarization: 17.74 SS G_CDS: -5.03 Total: 12.71 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -31.65 -8.16 -39.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608190551.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.204 kcal (2) G-P(sol) polarization free energy of solvation -31.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.816 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds