Wall clock time and date at job start Tue Mar 31 2020 14:14:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31343 * 1 3 3 Si 1.86803 * 120.00067 * 2 1 4 4 H 1.48493 * 109.47327 * 270.00616 * 3 2 1 5 5 H 1.48509 * 109.46955 * 30.00644 * 3 2 1 6 6 H 1.48504 * 109.47219 * 150.00248 * 3 2 1 7 7 C 1.39002 * 120.00166 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99834 * 187.15068 * 7 2 1 9 9 N 1.36987 * 119.99913 * 7.15277 * 7 2 1 10 10 C 1.37747 * 126.45317 * 219.52970 * 9 7 2 11 11 C 1.46131 * 125.23267 * 359.97438 * 10 9 7 12 12 C 1.35383 * 119.99844 * 222.44321 * 11 10 9 13 13 C 1.46197 * 120.00095 * 7.52176 * 12 11 10 14 14 C 1.36361 * 125.66900 * 187.31305 * 13 12 11 15 15 C 1.41909 * 106.59274 * 180.02562 * 14 13 12 16 16 C 1.47340 * 126.77313 * 179.97438 * 15 14 13 17 17 O 1.21523 * 120.00412 * 359.97438 * 16 15 14 18 18 O 1.34764 * 120.00089 * 179.97438 * 16 15 14 19 19 C 1.37797 * 106.45401 * 359.97438 * 15 14 13 20 20 O 1.33723 * 108.37602 * 359.73730 * 19 15 14 21 21 N 1.31718 * 109.53582 * 179.71311 * 10 9 7 22 22 C 1.35447 * 109.66318 * 0.26870 * 21 10 9 23 23 C 1.39918 * 133.20025 * 180.02562 * 22 21 10 24 24 C 1.37656 * 119.78733 * 179.97438 * 23 22 21 25 25 C 1.38769 * 120.53388 * 0.02562 * 24 23 22 26 26 C 1.37967 * 120.47486 * 359.97204 * 25 24 23 27 27 C 1.38353 * 126.45550 * 39.69602 * 9 7 2 28 28 H 0.97003 * 120.00124 * 4.98571 * 1 2 3 29 29 H 1.07992 * 119.99865 * 42.43783 * 11 10 9 30 30 H 1.07995 * 120.00204 * 187.51768 * 12 11 10 31 31 H 1.08002 * 126.70336 * 0.02562 * 14 13 12 32 32 H 0.96696 * 117.00135 * 180.02562 * 18 16 15 33 33 H 1.07996 * 125.81305 * 180.02562 * 19 15 14 34 34 H 1.07999 * 120.10856 * 359.94391 * 23 22 21 35 35 H 1.07990 * 119.73385 * 180.02562 * 24 23 22 36 36 H 1.08000 * 119.76501 * 179.97438 * 25 24 23 37 37 H 1.08003 * 120.07209 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3134 0.0000 0.0000 3 14 2.2475 1.6178 0.0000 4 1 2.4949 2.0465 -1.4000 5 1 1.4449 2.6527 0.7002 6 1 3.5451 1.4402 0.7000 7 6 2.0085 -1.2038 -0.0005 8 1 3.0821 -1.2074 0.1159 9 7 1.3316 -2.3854 -0.1488 10 6 1.5883 -3.5646 0.5153 11 6 2.6434 -3.7611 1.5071 12 6 3.3883 -4.8914 1.4880 13 6 3.2516 -5.8384 0.3826 14 6 3.8333 -7.0698 0.3140 15 6 3.4337 -7.6384 -0.9233 16 6 3.8102 -8.9627 -1.4480 17 8 4.5368 -9.6893 -0.7992 18 8 3.3488 -9.3684 -2.6474 19 6 2.6241 -6.7076 -1.5372 20 8 2.5242 -5.6418 -0.7358 21 7 0.7329 -4.4863 0.1231 22 6 -0.1054 -3.9650 -0.8043 23 6 -1.1763 -4.4943 -1.5327 24 6 -1.8557 -3.6976 -2.4264 25 6 -1.4870 -2.3727 -2.6116 26 6 -0.4337 -1.8338 -1.9019 27 6 0.2633 -2.6202 -0.9961 28 1 -0.4850 0.8369 -0.0730 29 1 2.8289 -3.0047 2.2552 30 1 4.0836 -5.0936 2.2893 31 1 4.4733 -7.5237 1.0562 32 1 3.6227 -10.2452 -2.9495 33 1 2.1473 -6.8215 -2.4995 34 1 -1.4686 -5.5248 -1.3947 35 1 -2.6824 -4.1070 -2.9878 36 1 -2.0284 -1.7590 -3.3162 37 1 -0.1525 -0.8017 -2.0509 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608190551.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:30 Heat of formation + Delta-G solvation = 4.467626 kcal Electronic energy + Delta-G solvation = -26537.386095 eV Core-core repulsion = 22633.109395 eV Total energy + Delta-G solvation = -3904.276700 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.094 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.54231 -42.32210 -40.86028 -37.87767 -37.05535 -36.07152 -35.03807 -34.08475 -32.99859 -30.90226 -30.48316 -28.89581 -27.07102 -25.56473 -24.79631 -22.87289 -22.70393 -22.00356 -21.61837 -20.39292 -19.50703 -18.76362 -18.23392 -17.67640 -17.27617 -17.15460 -16.81188 -16.38070 -16.28560 -16.23348 -15.67354 -15.12502 -14.93984 -14.71010 -14.54506 -14.14682 -13.79097 -13.69095 -13.30491 -13.22499 -13.01720 -12.85650 -12.62234 -12.55135 -12.30502 -12.23037 -11.95031 -11.83181 -11.45402 -11.16037 -10.89925 -10.69714 -10.46997 -9.23460 -9.00868 -8.39100 -8.37125 -6.49890 -0.21661 0.24344 0.59790 1.07192 1.37383 1.42093 1.51000 1.71984 1.94253 2.10672 2.13996 2.22730 2.42992 2.83089 2.97514 3.37582 3.65249 3.71860 3.76739 4.04260 4.20130 4.42721 4.50087 4.54715 4.67407 4.78183 4.90056 4.94110 5.00555 5.06334 5.14387 5.19170 5.29039 5.37330 5.48148 5.53064 5.59423 5.84529 5.94431 6.15041 6.17122 6.29576 6.43846 6.76449 6.99456 7.38747 7.56173 8.41147 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.014930 B = 0.004178 C = 0.003513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.915074 B = 6700.814225 C = 7969.017659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.014 3.986 3 Si 1.003 2.997 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.251 1.251 7 C -0.376 4.376 8 H 0.112 0.888 9 N -0.302 5.302 10 C 0.214 3.786 11 C -0.068 4.068 12 C -0.054 4.054 13 C 0.007 3.993 14 C -0.144 4.144 15 C -0.251 4.251 16 C 0.568 3.432 17 O -0.549 6.549 18 O -0.504 6.504 19 C 0.055 3.945 20 O -0.136 6.136 21 N -0.505 5.505 22 C 0.007 3.993 23 C -0.101 4.101 24 C -0.130 4.130 25 C -0.152 4.152 26 C -0.065 4.065 27 C 0.019 3.981 28 H 0.283 0.717 29 H 0.153 0.847 30 H 0.201 0.799 31 H 0.177 0.823 32 H 0.435 0.565 33 H 0.232 0.768 34 H 0.127 0.873 35 H 0.152 0.848 36 H 0.138 0.862 37 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.478 -8.005 -3.542 9.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.195 4.195 3 Si 0.823 3.177 4 H -0.192 1.192 5 H -0.201 1.201 6 H -0.174 1.174 7 C -0.504 4.504 8 H 0.129 0.871 9 N 0.027 4.973 10 C -0.043 4.043 11 C -0.088 4.088 12 C -0.075 4.075 13 C -0.042 4.042 14 C -0.163 4.163 15 C -0.254 4.254 16 C 0.415 3.585 17 O -0.442 6.442 18 O -0.318 6.318 19 C -0.019 4.019 20 O -0.027 6.027 21 N -0.229 5.229 22 C -0.118 4.118 23 C -0.121 4.121 24 C -0.150 4.150 25 C -0.173 4.173 26 C -0.086 4.086 27 C -0.096 4.096 28 H 0.093 0.907 29 H 0.171 0.829 30 H 0.218 0.782 31 H 0.194 0.806 32 H 0.297 0.703 33 H 0.248 0.752 34 H 0.145 0.855 35 H 0.169 0.831 36 H 0.155 0.845 37 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 4.272 -8.048 -2.861 9.550 hybrid contribution 0.258 1.131 -0.368 1.217 sum 4.530 -6.917 -3.229 8.876 Atomic orbital electron populations 1.70093 1.07887 1.30210 1.41107 1.26575 0.96225 1.03548 0.93152 0.84789 0.78527 0.75204 0.79140 1.19238 1.20090 1.17415 1.20021 0.93172 0.82168 1.55038 0.87073 1.41501 1.22243 1.08906 1.24636 1.22280 1.00013 0.83561 0.98480 1.21313 0.92329 0.98942 0.96207 1.21853 0.99943 0.90666 0.95011 1.20979 0.97044 0.96994 0.89206 1.21880 1.03669 0.93160 0.97610 1.19643 1.10634 0.95527 0.99567 1.19636 0.75459 0.84901 0.78517 1.90860 1.37230 1.56201 1.59938 1.84529 1.70407 1.42519 1.34377 1.25621 0.95914 0.83961 0.96426 1.84555 1.53686 1.38500 1.25991 1.70578 1.07127 1.29596 1.15583 1.19409 1.00066 0.91556 1.00749 1.20271 0.94673 0.99913 0.97279 1.20946 1.00908 0.93565 0.99594 1.21012 0.97833 0.96471 1.01939 1.20182 0.95815 0.97701 0.94856 1.19247 0.96446 0.95955 0.97937 0.90722 0.82906 0.78171 0.80588 0.70287 0.75164 0.85523 0.83063 0.84468 0.88201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -44.71 10.13 21.67 0.22 -44.49 16 2 C 0.01 0.65 4.94 84.95 0.42 1.07 16 3 Si 1.00 37.19 29.56 68.60 2.03 39.22 16 4 H -0.27 -9.72 7.11 99.48 0.71 -9.02 16 5 H -0.28 -10.09 7.11 99.48 0.71 -9.38 16 6 H -0.25 -8.72 7.11 99.48 0.71 -8.01 16 7 C -0.38 -18.99 9.58 84.07 0.81 -18.18 16 8 H 0.11 5.26 7.84 -2.91 -0.02 5.24 16 9 N -0.30 -15.76 2.86 -335.82 -0.96 -16.72 16 10 C 0.21 10.16 6.22 135.52 0.84 11.00 16 11 C -0.07 -2.53 9.75 23.66 0.23 -2.30 16 12 C -0.05 -1.61 10.14 23.68 0.24 -1.37 16 13 C 0.01 0.23 6.58 23.90 0.16 0.39 16 14 C -0.14 -4.24 10.67 22.74 0.24 -3.99 16 15 C -0.25 -7.38 6.16 -20.08 -0.12 -7.50 16 16 C 0.57 15.11 8.33 70.22 0.58 15.70 16 17 O -0.55 -17.25 17.72 19.76 0.35 -16.90 16 18 O -0.50 -9.38 13.27 -56.75 -0.75 -10.14 16 19 C 0.05 1.66 11.97 67.72 0.81 2.48 16 20 O -0.14 -5.17 6.63 -2.50 -0.02 -5.19 16 21 N -0.51 -24.39 8.36 -181.97 -1.52 -25.91 16 22 C 0.01 0.35 7.21 39.61 0.29 0.64 16 23 C -0.10 -4.14 10.11 22.54 0.23 -3.91 16 24 C -0.13 -4.66 10.01 22.26 0.22 -4.43 16 25 C -0.15 -5.98 10.03 22.33 0.22 -5.76 16 26 C -0.07 -3.13 8.49 22.32 0.19 -2.95 16 27 C 0.02 1.01 6.10 38.85 0.24 1.25 16 28 H 0.28 13.62 8.31 -92.71 -0.77 12.85 16 29 H 0.15 5.01 8.06 -2.91 -0.02 4.99 16 30 H 0.20 3.76 8.06 -2.91 -0.02 3.74 16 31 H 0.18 4.33 8.06 -2.91 -0.02 4.30 16 32 H 0.43 3.61 9.11 -74.06 -0.67 2.94 16 33 H 0.23 5.57 8.06 -2.91 -0.02 5.54 16 34 H 0.13 4.53 8.06 -2.91 -0.02 4.51 16 35 H 0.15 4.06 8.06 -2.92 -0.02 4.03 16 36 H 0.14 4.43 8.06 -2.91 -0.02 4.41 16 37 H 0.10 5.04 6.38 -2.91 -0.02 5.02 16 Total: -1.00 -72.24 334.19 5.41 -66.83 By element: Atomic # 1 Polarization: 30.69 SS G_CDS: 0.47 Total: 31.16 kcal Atomic # 6 Polarization: -23.46 SS G_CDS: 5.60 Total: -17.87 kcal Atomic # 7 Polarization: -84.86 SS G_CDS: -2.26 Total: -87.12 kcal Atomic # 8 Polarization: -31.80 SS G_CDS: -0.42 Total: -32.22 kcal Atomic # 14 Polarization: 37.19 SS G_CDS: 2.03 Total: 39.22 kcal Total: -72.24 5.41 -66.83 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608190551.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.294 kcal (2) G-P(sol) polarization free energy of solvation -72.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.827 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds