Wall clock time and date at job start Tue Mar 31 2020 13:51:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47321 * 2 1 4 4 O 1.45195 * 109.47123 * 60.00219 * 3 2 1 5 5 C 1.34232 * 117.00224 * 180.02562 * 4 3 2 6 6 O 1.20829 * 119.99821 * 359.97438 * 5 4 3 7 7 C 1.50700 * 120.00306 * 179.97438 * 5 4 3 8 8 S 1.81004 * 109.47128 * 179.97438 * 7 5 4 9 9 C 1.76202 * 99.99617 * 179.97438 * 8 7 5 10 10 H 1.07998 * 120.00458 * 359.97438 * 9 8 7 11 11 C 1.38800 * 119.99823 * 179.97438 * 9 8 7 12 12 N 1.31634 * 119.99738 * 0.02562 * 11 9 8 13 13 Si 1.86793 * 120.00173 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.47039 * 0.02562 * 13 11 9 15 15 H 1.48500 * 109.47331 * 120.00575 * 13 11 9 16 16 H 1.48501 * 109.47113 * 240.00065 * 13 11 9 17 17 C 1.50697 * 109.47138 * 119.99943 * 2 1 3 18 18 O 1.20827 * 119.99969 * 0.02562 * 17 2 1 19 19 O 1.34233 * 120.00061 * 179.97438 * 17 2 1 20 20 C 1.50706 * 109.47313 * 239.99977 * 2 1 3 21 21 C 1.38237 * 119.99744 * 300.00581 * 20 2 1 22 22 C 1.38235 * 119.99712 * 180.02562 * 21 20 2 23 23 C 1.38234 * 120.00220 * 359.94731 * 22 21 20 24 24 C 1.38233 * 120.00037 * 0.28719 * 23 22 21 25 25 C 1.38234 * 120.00223 * 120.01792 * 20 2 1 26 26 H 1.08995 * 109.47023 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46677 * 299.99918 * 1 2 3 28 28 H 1.09000 * 109.46795 * 59.99709 * 1 2 3 29 29 H 1.09001 * 109.47464 * 180.02562 * 3 2 1 30 30 H 1.09000 * 109.47424 * 299.99906 * 3 2 1 31 31 H 1.09006 * 109.46898 * 299.99698 * 7 5 4 32 32 H 1.09000 * 109.46992 * 59.99345 * 7 5 4 33 33 H 0.97004 * 120.00069 * 180.02562 * 12 11 9 34 34 H 0.96702 * 117.00104 * 180.02562 * 19 17 2 35 35 H 1.08005 * 120.00088 * 359.97438 * 21 20 2 36 36 H 1.07999 * 119.99770 * 179.97438 * 22 21 20 37 37 H 1.08002 * 119.99744 * 180.02562 * 23 22 21 38 38 H 1.07998 * 120.00395 * 179.72811 * 24 23 22 39 39 H 1.07998 * 119.99975 * 0.02562 * 25 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 1.5561 2.1269 1.1855 5 6 1.9164 3.4110 1.3376 6 8 2.6135 3.9452 0.5078 7 6 1.4515 4.1864 2.5433 8 16 2.0989 5.8747 2.4614 9 6 1.4204 6.5349 3.9475 10 1 0.8090 5.9133 4.5848 11 6 1.6718 7.8539 4.2991 12 7 2.4166 8.6117 3.5220 13 14 0.9520 8.5541 5.8741 14 1 0.1575 7.5062 6.5639 15 1 2.0523 9.0060 6.7631 16 1 0.0744 9.7068 5.5477 17 6 2.0323 -0.7104 1.2304 18 8 1.2472 -1.1700 2.0256 19 8 3.3521 -0.8335 1.4426 20 6 2.0324 -0.7104 -1.2305 21 6 1.6984 -2.0339 -1.4493 22 6 2.1596 -2.6857 -2.5777 23 6 2.9540 -2.0138 -3.4878 24 6 3.2921 -0.6918 -3.2666 25 6 2.8275 -0.0388 -2.1402 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 3.1301 1.4425 -0.0005 30 1 1.6768 1.9563 -0.8900 31 1 0.3619 4.2150 2.5589 32 1 1.8152 3.7017 3.4494 33 1 2.5926 9.5334 3.7678 34 1 3.6263 -1.2974 2.2455 35 1 1.0777 -2.5588 -0.7382 36 1 1.8990 -3.7197 -2.7484 37 1 3.3140 -2.5230 -4.3696 38 1 3.9163 -0.1681 -3.9754 39 1 3.0889 0.9950 -1.9690 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001609755038.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:38 Heat of formation + Delta-G solvation = -154.028096 kcal Electronic energy + Delta-G solvation = -24488.193071 eV Core-core repulsion = 20680.194682 eV Total energy + Delta-G solvation = -3807.998390 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.091 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.28240 -39.94516 -39.36616 -36.70697 -36.29599 -34.88724 -32.50168 -31.41025 -30.22966 -29.59893 -27.16532 -25.58474 -25.05372 -23.00242 -22.55450 -21.07070 -20.08688 -18.34994 -18.06007 -17.60652 -16.99479 -16.95000 -16.36521 -16.07566 -15.39264 -15.06787 -14.86246 -14.80971 -14.27597 -14.16945 -13.89437 -13.69188 -13.32468 -13.19299 -12.76921 -12.68342 -12.44017 -12.21005 -12.11375 -11.83864 -11.70287 -11.42288 -11.16708 -11.10679 -11.09334 -10.82646 -10.73806 -10.52589 -10.10221 -9.91055 -9.27388 -9.14275 -9.13932 -8.38557 -6.62667 -6.29275 -4.02005 0.90364 1.04284 1.97982 2.45318 2.58116 2.75504 3.18833 3.21658 3.28105 3.41725 3.45520 4.11796 4.14160 4.21248 4.41889 4.62995 4.64664 4.77173 4.96062 5.05531 5.06819 5.10326 5.17285 5.22629 5.30423 5.47412 5.48783 5.59043 5.61679 5.67154 5.74442 5.95172 6.05366 6.09384 6.14751 6.16907 6.29255 6.54779 6.60462 7.54363 7.67934 8.06797 8.29076 9.16580 10.78276 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.025983 B = 0.002558 C = 0.002425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.350749 B =10942.221113 C =11541.447587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.004 4.004 3 C 0.073 3.927 4 O -0.360 6.360 5 C 0.482 3.518 6 O -0.485 6.485 7 C -0.129 4.129 8 S -0.057 6.057 9 C -0.535 4.535 10 H 0.077 0.923 11 C 0.074 3.926 12 N -0.867 5.867 13 Si 0.922 3.078 14 H -0.270 1.270 15 H -0.279 1.279 16 H -0.279 1.279 17 C 0.498 3.502 18 O -0.503 6.503 19 O -0.509 6.509 20 C -0.076 4.076 21 C -0.108 4.108 22 C -0.116 4.116 23 C -0.116 4.116 24 C -0.113 4.113 25 C -0.108 4.108 26 H 0.069 0.931 27 H 0.082 0.918 28 H 0.074 0.926 29 H 0.087 0.913 30 H 0.090 0.910 31 H 0.104 0.896 32 H 0.103 0.897 33 H 0.269 0.731 34 H 0.411 0.589 35 H 0.123 0.877 36 H 0.125 0.875 37 H 0.124 0.876 38 H 0.127 0.873 39 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.333 -23.024 -11.715 25.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.005 4.005 3 C -0.001 4.001 4 O -0.278 6.278 5 C 0.323 3.677 6 O -0.370 6.370 7 C -0.276 4.276 8 S 0.169 5.831 9 C -0.683 4.683 10 H 0.095 0.905 11 C -0.135 4.135 12 N -0.502 5.502 13 Si 0.748 3.252 14 H -0.195 1.195 15 H -0.205 1.205 16 H -0.205 1.205 17 C 0.339 3.661 18 O -0.390 6.390 19 O -0.321 6.321 20 C -0.076 4.076 21 C -0.126 4.126 22 C -0.134 4.134 23 C -0.134 4.134 24 C -0.131 4.131 25 C -0.126 4.126 26 H 0.088 0.912 27 H 0.101 0.899 28 H 0.093 0.907 29 H 0.105 0.895 30 H 0.108 0.892 31 H 0.122 0.878 32 H 0.121 0.879 33 H 0.079 0.921 34 H 0.270 0.730 35 H 0.141 0.859 36 H 0.143 0.857 37 H 0.142 0.858 38 H 0.145 0.855 39 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 0.280 -22.136 -12.937 25.641 hybrid contribution -0.911 -0.448 2.364 2.573 sum -0.632 -22.584 -10.573 24.945 Atomic orbital electron populations 1.21805 0.89220 1.03666 1.04141 1.19402 0.98688 0.93139 0.89288 1.23068 1.00236 0.88966 0.87864 1.86509 1.70542 1.26740 1.44020 1.23325 0.77467 0.79332 0.87533 1.90673 1.34362 1.68998 1.42937 1.23313 1.05729 1.02890 0.95715 1.85404 1.67342 0.97636 1.32720 1.22882 1.37506 0.99711 1.08229 0.90509 1.25009 0.94879 0.95770 0.97890 1.70021 1.35527 1.07887 1.36799 0.86063 0.78803 0.78905 0.81436 1.19489 1.20499 1.20483 1.22869 0.80201 0.76452 0.86590 1.90719 1.56878 1.45503 1.45875 1.84528 1.25886 1.73128 1.48529 1.19216 0.99362 0.94442 0.94564 1.20965 0.99855 0.93702 0.98084 1.21110 0.98035 0.99986 0.94273 1.21237 0.98015 0.94855 0.99288 1.21190 0.99653 0.94886 0.97379 1.21220 0.96660 1.00611 0.94122 0.91190 0.89933 0.90671 0.89455 0.89169 0.87772 0.87901 0.92107 0.72973 0.85940 0.85731 0.85822 0.85464 0.85038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.36 7.43 37.16 0.28 -1.08 16 2 C 0.00 -0.04 0.63 -156.81 -0.10 -0.14 16 3 C 0.07 0.93 2.92 37.16 0.11 1.04 16 4 O -0.36 -5.65 9.18 -39.26 -0.36 -6.01 16 5 C 0.48 9.08 7.98 36.01 0.29 9.37 16 6 O -0.48 -10.27 15.61 -18.75 -0.29 -10.57 16 7 C -0.13 -2.61 6.27 36.01 0.23 -2.38 16 8 S -0.06 -1.52 20.58 -107.50 -2.21 -3.73 16 9 C -0.54 -14.95 9.50 30.94 0.29 -14.66 16 10 H 0.08 2.04 7.80 -52.49 -0.41 1.63 16 11 C 0.07 2.07 5.49 -17.43 -0.10 1.98 16 12 N -0.87 -25.63 13.22 55.49 0.73 -24.89 16 13 Si 0.92 21.13 29.55 -169.99 -5.02 16.11 16 14 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 15 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 16 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 17 C 0.50 6.09 6.21 36.00 0.22 6.31 16 18 O -0.50 -7.26 16.74 -18.75 -0.31 -7.57 16 19 O -0.51 -5.24 13.24 -39.27 -0.52 -5.77 16 20 C -0.08 -0.74 4.69 -104.62 -0.49 -1.23 16 21 C -0.11 -0.95 8.82 -39.58 -0.35 -1.30 16 22 C -0.12 -0.86 10.05 -39.58 -0.40 -1.26 16 23 C -0.12 -0.83 10.05 -39.58 -0.40 -1.23 16 24 C -0.11 -0.89 10.05 -39.58 -0.40 -1.29 16 25 C -0.11 -1.00 8.98 -39.58 -0.36 -1.36 16 26 H 0.07 0.66 7.35 -51.93 -0.38 0.28 16 27 H 0.08 0.97 7.64 -51.93 -0.40 0.58 16 28 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.09 1.11 7.48 -51.93 -0.39 0.73 16 30 H 0.09 1.05 7.51 -51.93 -0.39 0.66 16 31 H 0.10 1.96 8.14 -51.91 -0.42 1.53 16 32 H 0.10 1.96 8.14 -51.92 -0.42 1.54 16 33 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 34 H 0.41 2.50 9.10 45.56 0.41 2.91 16 35 H 0.12 1.00 7.58 -52.48 -0.40 0.60 16 36 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 37 H 0.12 0.61 8.06 -52.49 -0.42 0.19 16 38 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 39 H 0.13 1.18 5.90 -52.49 -0.31 0.87 16 LS Contribution 355.75 15.07 5.36 5.36 Total: -1.00 -34.61 355.75 -7.72 -42.34 By element: Atomic # 1 Polarization: 5.89 SS G_CDS: -3.93 Total: 1.96 kcal Atomic # 6 Polarization: -6.07 SS G_CDS: -1.17 Total: -7.24 kcal Atomic # 7 Polarization: -25.63 SS G_CDS: 0.73 Total: -24.89 kcal Atomic # 8 Polarization: -28.43 SS G_CDS: -1.49 Total: -29.92 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Atomic # 16 Polarization: -1.52 SS G_CDS: -2.21 Total: -3.73 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -34.61 -7.72 -42.34 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609755038.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.690 kcal (2) G-P(sol) polarization free energy of solvation -34.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds