Wall clock time and date at job start Tue Mar 31 2020 13:35:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86803 * 119.99770 * 2 1 4 4 H 1.48498 * 109.47254 * 270.00555 * 3 2 1 5 5 H 1.48501 * 109.47030 * 30.00370 * 3 2 1 6 6 H 1.48503 * 109.47102 * 150.00229 * 3 2 1 7 7 C 1.37872 * 120.00333 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00136 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99803 * 359.97438 * 7 2 1 10 10 N 1.46497 * 109.46996 * 179.97438 * 9 7 2 11 11 C 1.34776 * 120.00128 * 179.97438 * 10 9 7 12 12 O 1.21283 * 119.99809 * 0.02562 * 11 10 9 13 13 C 1.50696 * 120.00426 * 179.97438 * 11 10 9 14 14 O 1.42893 * 109.47653 * 180.02562 * 13 11 10 15 15 C 1.35700 * 117.00534 * 180.02562 * 14 13 11 16 16 C 1.39037 * 119.90406 * 359.97438 * 15 14 13 17 17 C 1.37660 * 120.09263 * 180.02562 * 16 15 14 18 18 C 1.39816 * 119.90623 * 359.97438 * 17 16 15 19 19 C 1.47462 * 120.09065 * 179.97438 * 18 17 16 20 20 O 1.21508 * 120.00057 * 173.52735 * 19 18 17 21 21 O 1.34750 * 120.00492 * 353.53151 * 19 18 17 22 22 C 1.39769 * 119.81463 * 0.25712 * 18 17 16 23 23 N 1.48019 * 120.04944 * 179.72396 * 22 18 17 24 24 O 1.21799 * 119.99500 * 309.16877 * 23 22 18 25 25 O 1.21802 * 120.00242 * 129.16027 * 23 22 18 26 26 C 1.37705 * 119.90665 * 359.51189 * 22 18 17 27 27 H 0.97002 * 120.00000 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.47159 * 60.00193 * 9 7 2 29 29 H 1.08994 * 109.47217 * 300.00107 * 9 7 2 30 30 H 0.97003 * 120.00462 * 0.02562 * 10 9 7 31 31 H 1.09004 * 109.47169 * 60.00528 * 13 11 10 32 32 H 1.09001 * 109.47766 * 300.01012 * 13 11 10 33 33 H 1.07996 * 119.95380 * 0.02562 * 16 15 14 34 34 H 1.07998 * 120.04313 * 179.97438 * 17 16 15 35 35 H 0.96693 * 117.00273 * 180.02562 * 21 19 18 36 36 H 1.08000 * 119.95756 * 180.23767 * 26 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2032 -3.6126 -0.0018 11 6 1.7540 -4.8833 -0.0015 12 8 0.5616 -5.1049 -0.0006 13 6 2.7333 -6.0287 -0.0033 14 8 2.0189 -7.2662 -0.0032 15 6 2.7580 -8.4043 -0.0042 16 6 4.1463 -8.3292 -0.0059 17 6 4.8998 -9.4813 -0.0074 18 6 4.2671 -10.7281 -0.0068 19 6 5.0704 -11.9648 -0.0091 20 8 4.5247 -13.0439 0.1100 21 8 6.4095 -11.8982 -0.1432 22 6 2.8713 -10.7990 -0.0101 23 7 2.1960 -12.1162 -0.0157 24 8 2.5130 -12.9595 -0.8354 25 8 1.3237 -12.3569 0.7996 26 6 2.1250 -9.6418 -0.0037 27 1 -0.4850 0.8401 0.0004 28 1 0.6241 -2.5567 -0.8903 29 1 0.6248 -2.5571 0.8896 30 1 3.1569 -3.4353 -0.0021 31 1 3.3612 -5.9713 0.8858 32 1 3.3587 -5.9707 -0.8941 33 1 4.6342 -7.3658 -0.0059 34 1 5.9782 -9.4220 -0.0091 35 1 6.8932 -12.7355 -0.1393 36 1 1.0463 -9.6956 -0.0023 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001610621358.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:35:08 Heat of formation + Delta-G solvation = -126.930671 kcal Electronic energy + Delta-G solvation = -25833.191746 eV Core-core repulsion = 21480.075175 eV Total energy + Delta-G solvation = -4353.116572 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.093 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.50860 -41.11103 -40.48767 -39.06167 -37.75643 -36.79266 -36.48157 -34.46077 -32.68094 -32.53818 -31.73158 -29.40179 -27.40122 -26.58763 -24.81597 -23.47499 -22.81086 -21.85462 -20.24419 -19.81554 -18.93539 -18.77230 -18.10831 -17.92092 -17.64303 -17.27461 -16.78542 -16.28433 -16.18262 -15.53274 -15.30173 -15.24653 -14.58537 -14.55418 -14.32503 -13.77324 -13.42152 -13.37285 -13.04586 -12.28479 -12.23074 -12.10569 -12.06283 -11.73988 -11.57635 -11.50218 -11.28130 -11.12278 -11.00429 -10.88403 -10.45863 -10.29097 -9.57491 -9.43402 -9.24131 -8.91486 -8.17584 -6.30591 -4.39165 -0.56662 0.07877 0.70028 0.93485 1.80679 2.15649 2.35426 2.71068 2.90533 3.14734 3.21273 3.23282 3.65790 3.79137 3.91299 4.08196 4.19329 4.23110 4.35657 4.55901 4.76290 4.84099 4.99804 5.05403 5.05965 5.12519 5.29399 5.38492 5.86173 6.10193 6.48618 7.06476 7.11140 7.23621 7.30902 7.43163 7.45879 7.79141 8.29557 8.54307 8.77100 9.27748 10.79368 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.029341 B = 0.002052 C = 0.001930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.073803 B =13639.511967 C =14502.614637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.065 3.935 3 Si 0.906 3.094 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.548 4.548 8 H 0.064 0.936 9 C 0.251 3.749 10 N -0.703 5.703 11 C 0.499 3.501 12 O -0.529 6.529 13 C 0.032 3.968 14 O -0.267 6.267 15 C 0.190 3.810 16 C -0.193 4.193 17 C -0.004 4.004 18 C -0.132 4.132 19 C 0.521 3.479 20 O -0.487 6.487 21 O -0.507 6.507 22 C 0.067 3.933 23 N 0.017 4.983 24 O -0.093 6.093 25 O -0.155 6.155 26 C -0.109 4.109 27 H 0.268 0.732 28 H 0.030 0.970 29 H 0.031 0.969 30 H 0.393 0.607 31 H 0.099 0.901 32 H 0.099 0.901 33 H 0.160 0.840 34 H 0.165 0.835 35 H 0.421 0.579 36 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.470 -19.073 -0.477 24.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.140 4.140 3 Si 0.733 3.267 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.197 1.197 7 C -0.586 4.586 8 H 0.082 0.918 9 C 0.131 3.869 10 N -0.354 5.354 11 C 0.281 3.719 12 O -0.406 6.406 13 C -0.046 4.046 14 O -0.177 6.177 15 C 0.140 3.860 16 C -0.211 4.211 17 C -0.022 4.022 18 C -0.134 4.134 19 C 0.364 3.636 20 O -0.375 6.375 21 O -0.320 6.320 22 C -0.015 4.015 23 N 0.547 4.453 24 O -0.325 6.325 25 O -0.368 6.368 26 C -0.129 4.129 27 H 0.078 0.922 28 H 0.048 0.952 29 H 0.049 0.951 30 H 0.226 0.774 31 H 0.117 0.883 32 H 0.117 0.883 33 H 0.177 0.823 34 H 0.183 0.817 35 H 0.281 0.719 36 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 14.118 -18.250 -0.366 23.076 hybrid contribution 1.254 0.295 0.001 1.288 sum 15.372 -17.955 -0.365 23.639 Atomic orbital electron populations 1.69966 1.06143 1.27584 1.48286 1.24959 0.94947 0.99561 0.94497 0.86380 0.79568 0.82458 0.78300 1.20380 1.20909 1.19720 1.21163 0.93271 0.90207 1.54001 0.91759 1.19217 0.88112 0.81423 0.98172 1.46372 1.11583 1.05221 1.72177 1.19709 0.89003 0.83880 0.79279 1.90755 1.16201 1.84350 1.49249 1.22952 0.95607 0.81888 1.04196 1.86234 1.34085 1.11675 1.85688 1.18973 0.89840 0.86715 0.90424 1.21713 0.92364 1.01152 1.05897 1.21285 1.01550 0.88751 0.90664 1.18531 0.89267 0.93476 1.12159 1.20364 0.81231 0.88416 0.73628 1.91094 1.72158 1.30007 1.44204 1.84478 1.19706 1.42574 1.85216 1.20546 0.90875 0.84187 1.05883 1.43241 1.00043 1.01827 1.00192 1.94584 1.66078 1.39851 1.31956 1.94588 1.23892 1.84559 1.33800 1.19914 1.02435 0.87283 1.03256 0.92240 0.95158 0.95133 0.77417 0.88319 0.88334 0.82282 0.81749 0.71870 0.81583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.82 13.29 55.43 0.74 -24.09 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.91 19.69 29.54 -169.99 -5.02 14.67 16 4 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 5 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 6 H -0.27 -5.72 7.11 56.52 0.40 -5.31 16 7 C -0.55 -13.77 9.28 -34.44 -0.32 -14.09 16 8 H 0.06 1.48 7.60 -52.49 -0.40 1.08 16 9 C 0.25 6.10 5.43 -5.19 -0.03 6.07 16 10 N -0.70 -12.64 5.55 -61.48 -0.34 -12.98 16 11 C 0.50 8.53 7.91 -10.99 -0.09 8.44 16 12 O -0.53 -11.86 16.50 -14.35 -0.24 -12.09 16 13 C 0.03 0.33 5.21 36.00 0.19 0.52 16 14 O -0.27 -3.24 9.66 -38.71 -0.37 -3.61 16 15 C 0.19 1.78 6.70 -39.00 -0.26 1.52 16 16 C -0.19 -1.19 9.01 -39.50 -0.36 -1.55 16 17 C 0.00 -0.02 9.60 -39.20 -0.38 -0.40 16 18 C -0.13 -1.20 5.87 -104.98 -0.62 -1.82 16 19 C 0.52 4.90 8.13 34.49 0.28 5.18 16 20 O -0.49 -6.32 13.76 -27.46 -0.38 -6.70 16 21 O -0.51 -2.72 12.69 -40.63 -0.52 -3.24 16 22 C 0.07 0.74 6.31 -79.57 -0.50 0.24 16 23 N 0.02 0.24 3.60 34.15 0.12 0.36 16 24 O -0.09 -1.38 16.09 -37.25 -0.60 -1.98 16 25 O -0.16 -2.29 19.14 -29.46 -0.56 -2.85 16 26 C -0.11 -1.13 9.75 -39.50 -0.39 -1.51 16 27 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 28 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.39 5.57 8.32 -40.82 -0.34 5.23 16 31 H 0.10 0.69 7.65 -51.93 -0.40 0.29 16 32 H 0.10 0.68 7.65 -51.93 -0.40 0.28 16 33 H 0.16 0.51 6.28 -52.49 -0.33 0.18 16 34 H 0.17 0.52 7.62 -52.49 -0.40 0.12 16 35 H 0.42 0.51 9.11 45.56 0.42 0.92 16 36 H 0.17 1.69 8.06 -52.49 -0.42 1.27 16 LS Contribution 336.66 15.07 5.07 5.07 Total: -1.00 -36.10 336.66 -6.91 -43.01 By element: Atomic # 1 Polarization: 2.49 SS G_CDS: -2.25 Total: 0.24 kcal Atomic # 6 Polarization: 6.76 SS G_CDS: -2.56 Total: 4.20 kcal Atomic # 7 Polarization: -37.23 SS G_CDS: 0.52 Total: -36.71 kcal Atomic # 8 Polarization: -27.81 SS G_CDS: -2.67 Total: -30.48 kcal Atomic # 14 Polarization: 19.69 SS G_CDS: -5.02 Total: 14.67 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -36.10 -6.91 -43.01 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610621358.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.922 kcal (2) G-P(sol) polarization free energy of solvation -36.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds