Wall clock time and date at job start Tue Mar 31 2020 13:35:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86803 * 119.99770 * 2 1 4 4 H 1.48498 * 109.47254 * 270.00555 * 3 2 1 5 5 H 1.48501 * 109.47030 * 30.00370 * 3 2 1 6 6 H 1.48503 * 109.47102 * 150.00229 * 3 2 1 7 7 C 1.37872 * 120.00333 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00136 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99803 * 359.97438 * 7 2 1 10 10 N 1.46497 * 109.46996 * 179.97438 * 9 7 2 11 11 C 1.34776 * 120.00128 * 179.97438 * 10 9 7 12 12 O 1.21283 * 119.99809 * 0.02562 * 11 10 9 13 13 C 1.50696 * 120.00426 * 179.97438 * 11 10 9 14 14 O 1.42893 * 109.47653 * 180.02562 * 13 11 10 15 15 C 1.35700 * 117.00534 * 180.02562 * 14 13 11 16 16 C 1.39037 * 119.90406 * 359.97438 * 15 14 13 17 17 C 1.37660 * 120.09263 * 180.02562 * 16 15 14 18 18 C 1.39816 * 119.90623 * 359.97438 * 17 16 15 19 19 C 1.47462 * 120.09065 * 179.97438 * 18 17 16 20 20 O 1.21508 * 120.00057 * 173.52735 * 19 18 17 21 21 O 1.34750 * 120.00492 * 353.53151 * 19 18 17 22 22 C 1.39769 * 119.81463 * 0.25712 * 18 17 16 23 23 N 1.48019 * 120.04944 * 179.72396 * 22 18 17 24 24 O 1.21799 * 119.99500 * 309.16877 * 23 22 18 25 25 O 1.21802 * 120.00242 * 129.16027 * 23 22 18 26 26 C 1.37705 * 119.90665 * 359.51189 * 22 18 17 27 27 H 0.97002 * 120.00000 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.47159 * 60.00193 * 9 7 2 29 29 H 1.08994 * 109.47217 * 300.00107 * 9 7 2 30 30 H 0.97003 * 120.00462 * 0.02562 * 10 9 7 31 31 H 1.09004 * 109.47169 * 60.00528 * 13 11 10 32 32 H 1.09001 * 109.47766 * 300.01012 * 13 11 10 33 33 H 1.07996 * 119.95380 * 0.02562 * 16 15 14 34 34 H 1.07998 * 120.04313 * 179.97438 * 17 16 15 35 35 H 0.96693 * 117.00273 * 180.02562 * 21 19 18 36 36 H 1.08000 * 119.95756 * 180.23767 * 26 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2032 -3.6126 -0.0018 11 6 1.7540 -4.8833 -0.0015 12 8 0.5616 -5.1049 -0.0006 13 6 2.7333 -6.0287 -0.0033 14 8 2.0189 -7.2662 -0.0032 15 6 2.7580 -8.4043 -0.0042 16 6 4.1463 -8.3292 -0.0059 17 6 4.8998 -9.4813 -0.0074 18 6 4.2671 -10.7281 -0.0068 19 6 5.0704 -11.9648 -0.0091 20 8 4.5247 -13.0439 0.1100 21 8 6.4095 -11.8982 -0.1432 22 6 2.8713 -10.7990 -0.0101 23 7 2.1960 -12.1162 -0.0157 24 8 2.5130 -12.9595 -0.8354 25 8 1.3237 -12.3569 0.7996 26 6 2.1250 -9.6418 -0.0037 27 1 -0.4850 0.8401 0.0004 28 1 0.6241 -2.5567 -0.8903 29 1 0.6248 -2.5571 0.8896 30 1 3.1569 -3.4353 -0.0021 31 1 3.3612 -5.9713 0.8858 32 1 3.3587 -5.9707 -0.8941 33 1 4.6342 -7.3658 -0.0059 34 1 5.9782 -9.4220 -0.0091 35 1 6.8932 -12.7355 -0.1393 36 1 1.0463 -9.6956 -0.0023 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001610621358.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:35:08 Heat of formation + Delta-G solvation = -154.073729 kcal Electronic energy + Delta-G solvation = -25834.368758 eV Core-core repulsion = 21480.075175 eV Total energy + Delta-G solvation = -4354.293583 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.093 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.45202 -41.90080 -41.24672 -40.31658 -38.62460 -37.73093 -37.21560 -36.19803 -34.41676 -33.31627 -32.48926 -30.61595 -28.70888 -27.79188 -25.52512 -24.72465 -24.04126 -22.68838 -21.64983 -20.66795 -19.92798 -19.48348 -19.28094 -18.71316 -18.49142 -18.34227 -17.65858 -17.60480 -16.93991 -16.91877 -16.69626 -15.96575 -15.88311 -15.86022 -14.91721 -14.82827 -14.40860 -14.33875 -14.00217 -13.99115 -13.78959 -13.01156 -12.92576 -12.89709 -12.73237 -12.71411 -12.46271 -12.36174 -12.27402 -12.20994 -11.78815 -11.48930 -10.90773 -10.89464 -10.81085 -9.96991 -9.89107 -8.28928 -6.45545 -1.37848 -0.59910 -0.20777 0.07101 1.14454 1.34928 1.46700 1.47406 1.58680 1.59263 1.69994 2.08423 2.36241 2.66057 3.07028 3.07091 3.27224 3.51622 3.59815 3.66796 3.77595 4.00897 4.09405 4.17545 4.40311 4.59628 4.72019 4.86929 5.09158 5.12999 5.22442 5.38573 5.43349 5.62283 5.82810 5.84647 6.30842 6.65033 6.74503 6.80567 7.23233 7.41126 8.83067 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.029341 B = 0.002052 C = 0.001930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.073803 B =13639.511967 C =14502.614637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.002 3.998 3 Si 0.984 3.016 4 H -0.272 1.272 5 H -0.289 1.289 6 H -0.251 1.251 7 C -0.552 4.552 8 H 0.091 0.909 9 C 0.265 3.735 10 N -0.695 5.695 11 C 0.492 3.508 12 O -0.594 6.594 13 C 0.044 3.956 14 O -0.303 6.303 15 C 0.182 3.818 16 C -0.164 4.164 17 C 0.018 3.982 18 C -0.139 4.139 19 C 0.525 3.475 20 O -0.533 6.533 21 O -0.487 6.487 22 C 0.047 3.953 23 N 0.018 4.982 24 O -0.109 6.109 25 O -0.189 6.189 26 C -0.122 4.122 27 H 0.268 0.732 28 H -0.011 1.011 29 H -0.011 1.011 30 H 0.416 0.584 31 H 0.148 0.852 32 H 0.148 0.852 33 H 0.206 0.794 34 H 0.208 0.792 35 H 0.441 0.559 36 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.688 -17.784 -0.587 27.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.198 4.198 3 Si 0.807 3.193 4 H -0.198 1.198 5 H -0.215 1.215 6 H -0.175 1.175 7 C -0.590 4.590 8 H 0.109 0.891 9 C 0.142 3.858 10 N -0.347 5.347 11 C 0.278 3.722 12 O -0.475 6.475 13 C -0.033 4.033 14 O -0.214 6.214 15 C 0.134 3.866 16 C -0.182 4.182 17 C 0.000 4.000 18 C -0.142 4.142 19 C 0.369 3.631 20 O -0.424 6.424 21 O -0.301 6.301 22 C -0.035 4.035 23 N 0.544 4.456 24 O -0.341 6.341 25 O -0.397 6.397 26 C -0.142 4.142 27 H 0.077 0.923 28 H 0.007 0.993 29 H 0.007 0.993 30 H 0.254 0.746 31 H 0.165 0.835 32 H 0.166 0.834 33 H 0.223 0.777 34 H 0.224 0.776 35 H 0.304 0.696 36 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 19.419 -17.001 -0.460 25.813 hybrid contribution -0.298 -0.143 0.012 0.330 sum 19.121 -17.144 -0.449 25.685 Atomic orbital electron populations 1.70141 1.08375 1.28554 1.50061 1.26073 0.95709 1.04004 0.94002 0.85167 0.78601 0.77006 0.78511 1.19754 1.21535 1.17472 1.21622 0.94567 0.90185 1.52644 0.89060 1.18591 0.88710 0.84131 0.94350 1.45966 1.11744 1.04567 1.72416 1.20934 0.89469 0.85022 0.76731 1.90734 1.19728 1.85385 1.51662 1.22980 0.93053 0.78460 1.08806 1.86168 1.35933 1.12726 1.86579 1.18962 0.91096 0.85051 0.91538 1.22195 0.90384 1.03187 1.02412 1.21765 1.03298 0.86839 0.88060 1.18826 0.88198 0.95046 1.12102 1.20461 0.82257 0.87805 0.72547 1.91090 1.73244 1.31623 1.46469 1.84425 1.17579 1.43997 1.84119 1.20595 0.91825 0.82291 1.08772 1.43651 0.99665 1.02886 0.99447 1.94548 1.66066 1.41362 1.32100 1.94561 1.25226 1.85473 1.34442 1.19867 1.02055 0.88077 1.04159 0.92345 0.99341 0.99322 0.74648 0.83460 0.83428 0.77679 0.77559 0.69599 0.83085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.05 13.29 21.45 0.28 -53.77 16 2 C 0.00 0.09 5.46 84.65 0.46 0.55 16 3 Si 0.98 39.57 29.54 68.60 2.03 41.59 16 4 H -0.27 -10.62 7.11 99.48 0.71 -9.91 16 5 H -0.29 -11.82 7.11 99.48 0.71 -11.11 16 6 H -0.25 -9.18 7.11 99.48 0.71 -8.47 16 7 C -0.55 -27.38 9.28 25.60 0.24 -27.14 16 8 H 0.09 3.92 7.60 -2.91 -0.02 3.90 16 9 C 0.26 13.26 5.43 85.63 0.46 13.72 16 10 N -0.70 -24.04 5.55 -466.80 -2.59 -26.63 16 11 C 0.49 16.23 7.91 87.66 0.69 16.92 16 12 O -0.59 -27.61 16.50 16.00 0.26 -27.34 16 13 C 0.04 0.70 5.21 71.23 0.37 1.07 16 14 O -0.30 -6.63 9.66 -71.16 -0.69 -7.32 16 15 C 0.18 2.88 6.70 22.64 0.15 3.03 16 16 C -0.16 -1.02 9.01 22.32 0.20 -0.82 16 17 C 0.02 0.12 9.60 22.51 0.22 0.33 16 18 C -0.14 -2.19 5.87 -20.10 -0.12 -2.31 16 19 C 0.53 8.86 8.13 70.25 0.57 9.43 16 20 O -0.53 -13.83 13.76 27.63 0.38 -13.45 16 21 O -0.49 -3.41 12.69 -56.61 -0.72 -4.13 16 22 C 0.05 1.04 6.31 36.62 0.23 1.27 16 23 N 0.02 0.53 3.60 -45.88 -0.17 0.36 16 24 O -0.11 -3.42 16.09 26.33 0.42 -2.99 16 25 O -0.19 -6.05 19.14 18.88 0.36 -5.69 16 26 C -0.12 -2.51 9.75 22.33 0.22 -2.29 16 27 H 0.27 14.58 8.31 -92.71 -0.77 13.81 16 28 H -0.01 -0.66 8.14 -2.39 -0.02 -0.67 16 29 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 30 H 0.42 10.28 8.32 -92.71 -0.77 9.51 16 31 H 0.15 1.00 7.65 -2.38 -0.02 0.98 16 32 H 0.15 0.99 7.65 -2.39 -0.02 0.97 16 33 H 0.21 -0.57 6.28 -2.91 -0.02 -0.59 16 34 H 0.21 -0.33 7.62 -2.91 -0.02 -0.35 16 35 H 0.44 -0.38 9.11 -74.06 -0.67 -1.06 16 36 H 0.15 3.41 8.06 -2.91 -0.02 3.39 16 Total: -1.00 -88.88 336.66 3.02 -85.86 By element: Atomic # 1 Polarization: -0.01 SS G_CDS: -0.26 Total: -0.26 kcal Atomic # 6 Polarization: 10.06 SS G_CDS: 3.70 Total: 13.76 kcal Atomic # 7 Polarization: -77.56 SS G_CDS: -2.47 Total: -80.03 kcal Atomic # 8 Polarization: -60.95 SS G_CDS: 0.02 Total: -60.92 kcal Atomic # 14 Polarization: 39.57 SS G_CDS: 2.03 Total: 41.59 kcal Total: -88.88 3.02 -85.86 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610621358.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.213 kcal (2) G-P(sol) polarization free energy of solvation -88.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds