Wall clock time and date at job start Tue Mar 31 2020 13:34:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86809 * 119.99669 * 2 1 4 4 H 1.48493 * 109.47266 * 275.10267 * 3 2 1 5 5 H 1.48507 * 109.46647 * 35.09969 * 3 2 1 6 6 H 1.48502 * 109.46914 * 155.09805 * 3 2 1 7 7 C 1.38943 * 120.00345 * 179.97438 * 2 1 3 8 8 H 1.08009 * 120.00180 * 189.59663 * 7 2 1 9 9 N 1.37098 * 120.00366 * 9.60133 * 7 2 1 10 10 C 1.46504 * 119.99543 * 24.51410 * 9 7 2 11 11 C 1.50703 * 109.46926 * 264.70749 * 10 9 7 12 12 O 1.20827 * 120.00273 * 0.02562 * 11 10 9 13 13 O 1.34232 * 120.00051 * 180.02562 * 11 10 9 14 14 C 1.34773 * 120.00365 * 204.24179 * 9 7 2 15 15 O 1.21284 * 120.00045 * 175.28798 * 14 9 7 16 16 C 1.50706 * 119.99920 * 355.28938 * 14 9 7 17 17 H 1.09002 * 109.46781 * 314.28501 * 16 14 9 18 18 O 1.42893 * 109.47152 * 194.28192 * 16 14 9 19 19 C 1.50699 * 109.47186 * 74.27919 * 16 14 9 20 20 C 1.38258 * 119.99758 * 74.05305 * 19 16 14 21 21 C 1.38217 * 120.00058 * 179.76146 * 20 19 16 22 22 C 1.38259 * 119.99745 * 0.51984 * 21 20 19 23 23 C 1.38210 * 120.00143 * 359.73497 * 22 21 20 24 24 N 1.48012 * 120.00086 * 179.97438 * 23 22 21 25 25 O 1.21805 * 119.99989 * 185.14127 * 24 23 22 26 26 O 1.21800 * 120.00316 * 5.14369 * 24 23 22 27 27 C 1.38209 * 120.00554 * 254.33299 * 19 16 14 28 28 H 0.96995 * 120.00407 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.47338 * 24.70963 * 10 9 7 30 30 H 1.08996 * 109.47222 * 144.71202 * 10 9 7 31 31 H 0.96696 * 116.99827 * 180.02562 * 13 11 10 32 32 H 0.96703 * 114.00109 * 299.99735 * 18 16 14 33 33 H 1.07999 * 119.99973 * 0.02562 * 20 19 16 34 34 H 1.07997 * 119.99934 * 180.23243 * 21 20 19 35 35 H 1.07997 * 119.99882 * 179.72045 * 22 21 20 36 36 H 1.07999 * 119.99645 * 359.97438 * 27 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6179 0.0000 4 1 2.3877 2.1088 -1.3944 5 1 1.5033 2.6192 0.8051 6 1 3.5953 1.4116 0.5895 7 6 2.0089 -1.2032 0.0005 8 1 3.0776 -1.2097 0.1565 9 7 1.3379 -2.3824 -0.1970 10 6 0.0627 -2.3876 -0.9181 11 6 -1.0735 -2.3305 0.0703 12 8 -0.8419 -2.2893 1.2554 13 8 -2.3430 -2.3256 -0.3660 14 6 1.8541 -3.5375 0.2675 15 8 1.2215 -4.5675 0.1686 16 6 3.2175 -3.5492 0.9096 17 1 3.9115 -2.9713 0.2993 18 8 3.6830 -4.8961 1.0145 19 6 3.1302 -2.9393 2.2849 20 6 2.5485 -3.6480 3.3198 21 6 2.4729 -3.0907 4.5823 22 6 2.9692 -1.8201 4.8079 23 6 3.5460 -1.1095 3.7722 24 7 4.0768 0.2509 4.0136 25 8 4.4996 0.9136 3.0832 26 8 4.0909 0.7077 5.1426 27 6 3.6264 -1.6692 2.5105 28 1 -0.4850 0.8400 -0.0004 29 1 0.0146 -1.5209 -1.5775 30 1 -0.0162 -3.2993 -1.5101 31 1 -3.0377 -2.2877 0.3055 32 1 3.1128 -5.4692 1.5451 33 1 2.1571 -4.6389 3.1426 34 1 2.0219 -3.6458 5.3915 35 1 2.9061 -1.3828 5.7933 36 1 4.0770 -1.1140 1.7012 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001610622032.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:34:21 Heat of formation + Delta-G solvation = -134.185762 kcal Electronic energy + Delta-G solvation = -28975.016689 eV Core-core repulsion = 24621.585513 eV Total energy + Delta-G solvation = -4353.431176 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.093 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.87228 -40.15837 -39.13264 -38.17798 -36.28924 -36.23603 -35.14584 -34.66468 -32.08028 -31.69813 -31.60855 -28.54506 -26.43424 -26.28503 -24.79558 -22.64507 -21.90960 -20.98716 -19.65110 -18.86171 -18.38581 -18.05730 -17.22116 -17.09794 -16.66859 -16.49485 -15.92344 -15.69289 -15.31943 -14.73376 -14.50323 -14.45040 -14.07336 -13.67398 -13.33330 -13.23387 -12.72008 -12.18725 -12.14267 -11.95416 -11.79003 -11.59558 -11.35680 -11.28341 -11.09971 -10.94704 -10.85217 -10.75029 -10.52781 -10.38840 -10.33197 -9.72778 -9.39850 -9.27479 -9.20089 -8.52816 -8.15721 -6.70977 -4.32655 0.15036 1.14954 1.63569 1.72850 2.99329 3.16111 3.20379 3.31947 3.53724 3.61295 3.82841 4.10764 4.33663 4.56485 4.62481 4.72266 4.83665 4.92531 5.04900 5.18165 5.31917 5.64950 5.68391 5.72046 5.94673 6.10015 6.13237 6.31443 6.44339 6.45750 6.53063 6.75466 7.04141 7.33216 7.54659 7.69862 7.94230 7.96004 8.71804 8.98711 9.12815 9.42610 10.34834 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.010874 B = 0.007138 C = 0.005451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2574.365173 B = 3921.636205 C = 5135.687023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.050 3.950 3 Si 0.907 3.093 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.243 1.243 7 C -0.347 4.347 8 H 0.102 0.898 9 N -0.415 5.415 10 C 0.159 3.841 11 C 0.503 3.497 12 O -0.510 6.510 13 O -0.536 6.536 14 C 0.444 3.556 15 O -0.591 6.591 16 C 0.149 3.851 17 H 0.129 0.871 18 O -0.537 6.537 19 C -0.087 4.087 20 C -0.051 4.051 21 C -0.120 4.120 22 C -0.058 4.058 23 C -0.047 4.047 24 N 0.034 4.966 25 O -0.157 6.157 26 O -0.177 6.177 27 C -0.013 4.013 28 H 0.276 0.724 29 H 0.123 0.877 30 H 0.080 0.920 31 H 0.390 0.610 32 H 0.378 0.622 33 H 0.137 0.863 34 H 0.143 0.857 35 H 0.147 0.853 36 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.778 -3.962 3.691 6.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.157 4.157 3 Si 0.732 3.268 4 H -0.199 1.199 5 H -0.206 1.206 6 H -0.166 1.166 7 C -0.473 4.473 8 H 0.120 0.880 9 N -0.134 5.134 10 C 0.033 3.967 11 C 0.344 3.656 12 O -0.395 6.395 13 O -0.347 6.347 14 C 0.232 3.768 15 O -0.477 6.477 16 C 0.087 3.913 17 H 0.147 0.853 18 O -0.343 6.343 19 C -0.089 4.089 20 C -0.069 4.069 21 C -0.138 4.138 22 C -0.077 4.077 23 C -0.130 4.130 24 N 0.551 4.449 25 O -0.374 6.374 26 O -0.390 6.390 27 C -0.032 4.032 28 H 0.087 0.913 29 H 0.141 0.859 30 H 0.098 0.902 31 H 0.247 0.753 32 H 0.227 0.773 33 H 0.155 0.845 34 H 0.161 0.839 35 H 0.165 0.835 36 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 2.925 -4.726 3.206 6.416 hybrid contribution -0.781 1.491 0.926 1.921 sum 2.144 -3.235 4.131 5.668 Atomic orbital electron populations 1.69597 1.06296 1.28477 1.45990 1.25256 0.95398 1.00116 0.94884 0.86136 0.81255 0.80658 0.78796 1.19859 1.20650 1.16581 1.19638 0.92784 0.82712 1.52203 0.88010 1.43301 1.17171 1.06283 1.46674 1.20412 0.80869 1.03318 0.92082 1.23450 0.82205 0.70121 0.89824 1.90544 1.84295 1.45724 1.18964 1.84512 1.17815 1.87188 1.45187 1.20585 0.89129 0.84543 0.82529 1.90571 1.62339 1.33257 1.61547 1.20467 0.95820 0.83672 0.91343 0.85338 1.86574 1.52044 1.19581 1.76064 1.20117 0.98387 0.94052 0.96314 1.21322 0.93113 1.00188 0.92272 1.21012 1.00667 0.94445 0.97706 1.20940 0.94141 0.94098 0.98563 1.20977 1.10110 0.84446 0.97488 1.43622 0.98186 1.02817 1.00236 1.94573 1.48137 1.58611 1.36120 1.94475 1.60894 1.74366 1.09253 1.20900 0.94085 0.93946 0.94311 0.91279 0.85889 0.90170 0.75347 0.77329 0.84501 0.83884 0.83480 0.82593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -21.30 8.68 55.50 0.48 -20.82 16 2 C 0.05 1.17 5.11 -17.47 -0.09 1.08 16 3 Si 0.91 18.93 29.56 -169.99 -5.03 13.90 16 4 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 5 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 6 H -0.24 -4.94 7.02 56.52 0.40 -4.55 16 7 C -0.35 -7.80 7.74 -14.94 -0.12 -7.92 16 8 H 0.10 2.10 4.22 -52.48 -0.22 1.88 16 9 N -0.42 -9.42 2.15 -116.09 -0.25 -9.67 16 10 C 0.16 3.52 5.11 -5.19 -0.03 3.49 16 11 C 0.50 11.56 6.33 36.01 0.23 11.78 16 12 O -0.51 -13.28 16.54 -18.75 -0.31 -13.59 16 13 O -0.54 -10.26 13.42 -39.26 -0.53 -10.79 16 14 C 0.44 9.64 6.71 -10.98 -0.07 9.56 16 15 O -0.59 -13.98 16.02 -13.94 -0.22 -14.20 16 16 C 0.15 2.67 2.91 -29.03 -0.08 2.58 16 17 H 0.13 2.16 6.84 -51.93 -0.36 1.81 16 18 O -0.54 -8.84 12.98 -54.72 -0.71 -9.55 16 19 C -0.09 -1.48 4.54 -104.63 -0.48 -1.95 16 20 C -0.05 -0.76 9.23 -39.58 -0.37 -1.13 16 21 C -0.12 -1.59 10.05 -39.58 -0.40 -1.99 16 22 C -0.06 -0.86 9.56 -39.58 -0.38 -1.23 16 23 C -0.05 -0.82 6.84 -79.95 -0.55 -1.37 16 24 N 0.03 0.63 4.45 33.96 0.15 0.79 16 25 O -0.16 -3.14 18.37 -29.46 -0.54 -3.68 16 26 O -0.18 -3.26 18.46 -29.46 -0.54 -3.80 16 27 C -0.01 -0.23 7.75 -39.58 -0.31 -0.54 16 28 H 0.28 6.65 8.31 -40.82 -0.34 6.31 16 29 H 0.12 2.73 6.64 -51.93 -0.34 2.38 16 30 H 0.08 1.67 7.65 -51.93 -0.40 1.27 16 31 H 0.39 5.82 9.10 45.56 0.41 6.23 16 32 H 0.38 5.33 7.34 45.56 0.33 5.66 16 33 H 0.14 1.82 7.04 -52.49 -0.37 1.45 16 34 H 0.14 1.40 8.06 -52.49 -0.42 0.98 16 35 H 0.15 1.85 7.62 -52.49 -0.40 1.45 16 36 H 0.16 2.72 6.02 -52.49 -0.32 2.40 16 LS Contribution 322.59 15.07 4.86 4.86 Total: -1.00 -31.39 322.59 -6.49 -37.88 By element: Atomic # 1 Polarization: 17.51 SS G_CDS: -1.22 Total: 16.29 kcal Atomic # 6 Polarization: 15.00 SS G_CDS: -2.63 Total: 12.37 kcal Atomic # 7 Polarization: -30.08 SS G_CDS: 0.38 Total: -29.70 kcal Atomic # 8 Polarization: -52.75 SS G_CDS: -2.86 Total: -55.60 kcal Atomic # 14 Polarization: 18.93 SS G_CDS: -5.03 Total: 13.90 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -31.39 -6.49 -37.88 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610622032.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.310 kcal (2) G-P(sol) polarization free energy of solvation -31.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds