Wall clock time and date at job start Tue Mar 31 2020 13:34:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86809 * 119.99669 * 2 1 4 4 H 1.48493 * 109.47266 * 275.10267 * 3 2 1 5 5 H 1.48507 * 109.46647 * 35.09969 * 3 2 1 6 6 H 1.48502 * 109.46914 * 155.09805 * 3 2 1 7 7 C 1.38943 * 120.00345 * 179.97438 * 2 1 3 8 8 H 1.08009 * 120.00180 * 189.59663 * 7 2 1 9 9 N 1.37098 * 120.00366 * 9.60133 * 7 2 1 10 10 C 1.46504 * 119.99543 * 24.51410 * 9 7 2 11 11 C 1.50703 * 109.46926 * 264.70749 * 10 9 7 12 12 O 1.20827 * 120.00273 * 0.02562 * 11 10 9 13 13 O 1.34232 * 120.00051 * 180.02562 * 11 10 9 14 14 C 1.34773 * 120.00365 * 204.24179 * 9 7 2 15 15 O 1.21284 * 120.00045 * 175.28798 * 14 9 7 16 16 C 1.50706 * 119.99920 * 355.28938 * 14 9 7 17 17 H 1.09002 * 109.46781 * 314.28501 * 16 14 9 18 18 O 1.42893 * 109.47152 * 194.28192 * 16 14 9 19 19 C 1.50699 * 109.47186 * 74.27919 * 16 14 9 20 20 C 1.38258 * 119.99758 * 74.05305 * 19 16 14 21 21 C 1.38217 * 120.00058 * 179.76146 * 20 19 16 22 22 C 1.38259 * 119.99745 * 0.51984 * 21 20 19 23 23 C 1.38210 * 120.00143 * 359.73497 * 22 21 20 24 24 N 1.48012 * 120.00086 * 179.97438 * 23 22 21 25 25 O 1.21805 * 119.99989 * 185.14127 * 24 23 22 26 26 O 1.21800 * 120.00316 * 5.14369 * 24 23 22 27 27 C 1.38209 * 120.00554 * 254.33299 * 19 16 14 28 28 H 0.96995 * 120.00407 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.47338 * 24.70963 * 10 9 7 30 30 H 1.08996 * 109.47222 * 144.71202 * 10 9 7 31 31 H 0.96696 * 116.99827 * 180.02562 * 13 11 10 32 32 H 0.96703 * 114.00109 * 299.99735 * 18 16 14 33 33 H 1.07999 * 119.99973 * 0.02562 * 20 19 16 34 34 H 1.07997 * 119.99934 * 180.23243 * 21 20 19 35 35 H 1.07997 * 119.99882 * 179.72045 * 22 21 20 36 36 H 1.07999 * 119.99645 * 359.97438 * 27 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6179 0.0000 4 1 2.3877 2.1088 -1.3944 5 1 1.5033 2.6192 0.8051 6 1 3.5953 1.4116 0.5895 7 6 2.0089 -1.2032 0.0005 8 1 3.0776 -1.2097 0.1565 9 7 1.3379 -2.3824 -0.1970 10 6 0.0627 -2.3876 -0.9181 11 6 -1.0735 -2.3305 0.0703 12 8 -0.8419 -2.2893 1.2554 13 8 -2.3430 -2.3256 -0.3660 14 6 1.8541 -3.5375 0.2675 15 8 1.2215 -4.5675 0.1686 16 6 3.2175 -3.5492 0.9096 17 1 3.9115 -2.9713 0.2993 18 8 3.6830 -4.8961 1.0145 19 6 3.1302 -2.9393 2.2849 20 6 2.5485 -3.6480 3.3198 21 6 2.4729 -3.0907 4.5823 22 6 2.9692 -1.8201 4.8079 23 6 3.5460 -1.1095 3.7722 24 7 4.0768 0.2509 4.0136 25 8 4.4996 0.9136 3.0832 26 8 4.0909 0.7077 5.1426 27 6 3.6264 -1.6692 2.5105 28 1 -0.4850 0.8400 -0.0004 29 1 0.0146 -1.5209 -1.5775 30 1 -0.0162 -3.2993 -1.5101 31 1 -3.0377 -2.2877 0.3055 32 1 3.1128 -5.4692 1.5451 33 1 2.1571 -4.6389 3.1426 34 1 2.0219 -3.6458 5.3915 35 1 2.9061 -1.3828 5.7933 36 1 4.0770 -1.1140 1.7012 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001610622032.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:34:21 Heat of formation + Delta-G solvation = -154.793593 kcal Electronic energy + Delta-G solvation = -28975.910311 eV Core-core repulsion = 24621.585513 eV Total energy + Delta-G solvation = -4354.324799 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.093 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.27806 -41.67654 -40.71360 -39.72042 -37.74047 -37.68822 -36.80366 -36.41990 -33.68364 -33.11519 -32.88176 -30.17701 -27.97542 -27.63002 -26.48765 -23.88189 -23.33992 -22.57759 -21.33590 -20.22567 -19.80892 -19.63277 -18.83154 -18.64351 -18.26048 -17.79239 -17.44894 -17.26876 -16.73890 -16.27929 -16.18966 -16.13968 -15.40294 -15.12312 -14.83879 -14.67293 -14.11603 -13.76196 -13.50863 -13.36497 -13.30578 -13.28365 -12.90065 -12.78236 -12.70885 -12.51021 -12.34152 -12.23962 -12.10462 -12.07647 -11.89195 -11.50142 -11.03119 -10.77843 -10.50309 -10.04456 -9.88482 -8.48928 -6.11741 -1.19928 -0.06009 0.30560 0.39414 1.31898 1.45508 1.54139 1.68587 1.83842 2.15632 2.28283 2.45659 2.76311 3.02386 3.28913 3.42436 3.49542 3.72886 3.85792 3.93786 4.06608 4.07270 4.39284 4.42834 4.57992 4.70940 4.74573 4.88196 4.94071 5.06881 5.18727 5.30138 5.49747 5.61515 5.95048 6.16967 6.49204 6.50775 6.95291 7.28128 7.43824 7.70032 8.56812 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.010874 B = 0.007138 C = 0.005451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2574.365173 B = 3921.636205 C = 5135.687023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.017 3.983 3 Si 0.950 3.050 4 H -0.264 1.264 5 H -0.301 1.301 6 H -0.239 1.239 7 C -0.342 4.342 8 H 0.116 0.884 9 N -0.427 5.427 10 C 0.154 3.846 11 C 0.506 3.494 12 O -0.545 6.545 13 O -0.526 6.526 14 C 0.440 3.560 15 O -0.614 6.614 16 C 0.159 3.841 17 H 0.135 0.865 18 O -0.536 6.536 19 C -0.102 4.102 20 C -0.054 4.054 21 C -0.105 4.105 22 C -0.054 4.054 23 C -0.066 4.066 24 N 0.034 4.966 25 O -0.203 6.203 26 O -0.159 6.159 27 C -0.026 4.026 28 H 0.271 0.729 29 H 0.119 0.881 30 H 0.090 0.910 31 H 0.411 0.589 32 H 0.389 0.611 33 H 0.156 0.844 34 H 0.188 0.812 35 H 0.172 0.828 36 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.843 -5.031 5.003 7.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.186 4.186 3 Si 0.774 3.226 4 H -0.189 1.189 5 H -0.228 1.228 6 H -0.162 1.162 7 C -0.469 4.469 8 H 0.134 0.866 9 N -0.146 5.146 10 C 0.028 3.972 11 C 0.348 3.652 12 O -0.434 6.434 13 O -0.338 6.338 14 C 0.229 3.771 15 O -0.501 6.501 16 C 0.097 3.903 17 H 0.152 0.848 18 O -0.342 6.342 19 C -0.104 4.104 20 C -0.072 4.072 21 C -0.124 4.124 22 C -0.073 4.073 23 C -0.150 4.150 24 N 0.548 4.452 25 O -0.409 6.409 26 O -0.379 6.379 27 C -0.046 4.046 28 H 0.081 0.919 29 H 0.137 0.863 30 H 0.108 0.892 31 H 0.270 0.730 32 H 0.239 0.761 33 H 0.173 0.827 34 H 0.205 0.795 35 H 0.190 0.810 36 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 3.011 -5.785 4.414 7.875 hybrid contribution -0.885 1.681 0.635 2.003 sum 2.127 -4.104 5.049 6.845 Atomic orbital electron populations 1.69676 1.07085 1.28287 1.47887 1.25760 0.95778 1.01938 0.95172 0.85483 0.80303 0.78050 0.78727 1.18874 1.22791 1.16174 1.19922 0.93426 0.82606 1.50935 0.86645 1.43486 1.17401 1.06685 1.47066 1.20472 0.81031 1.03530 0.92160 1.23548 0.83204 0.69137 0.89304 1.90514 1.85054 1.47569 1.20261 1.84450 1.17224 1.86431 1.45696 1.21268 0.90249 0.83778 0.81765 1.90543 1.63437 1.33841 1.62274 1.20308 0.93539 0.84560 0.91902 0.84753 1.86565 1.52112 1.19168 1.76393 1.20075 0.99745 0.94170 0.96387 1.21707 0.92061 1.00885 0.92514 1.21511 0.98968 0.93770 0.98110 1.21380 0.92698 0.94340 0.98867 1.21209 1.11475 0.83846 0.98429 1.43863 0.97897 1.03386 1.00015 1.94575 1.50354 1.59603 1.36409 1.94434 1.59713 1.74562 1.09146 1.20870 0.94861 0.94307 0.94514 0.91892 0.86277 0.89201 0.73034 0.76074 0.82678 0.79508 0.81041 0.83441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -44.04 8.68 21.66 0.19 -43.86 16 2 C 0.02 0.79 5.11 84.93 0.43 1.22 16 3 Si 0.95 39.24 29.56 68.60 2.03 41.27 16 4 H -0.26 -10.37 7.11 99.48 0.71 -9.67 16 5 H -0.30 -13.36 7.11 99.48 0.71 -12.65 16 6 H -0.24 -9.63 7.02 99.48 0.70 -8.93 16 7 C -0.34 -15.31 7.74 84.04 0.65 -14.66 16 8 H 0.12 4.74 4.22 -2.91 -0.01 4.73 16 9 N -0.43 -19.21 2.15 -639.60 -1.38 -20.59 16 10 C 0.15 6.78 5.11 85.63 0.44 7.22 16 11 C 0.51 22.97 6.33 71.24 0.45 23.42 16 12 O -0.55 -28.15 16.54 21.96 0.36 -27.78 16 13 O -0.53 -19.52 13.42 -51.44 -0.69 -20.21 16 14 C 0.44 18.71 6.71 87.66 0.59 19.30 16 15 O -0.61 -28.41 16.02 15.59 0.25 -28.16 16 16 C 0.16 5.50 2.91 29.10 0.08 5.58 16 17 H 0.14 4.42 6.84 -2.39 -0.02 4.40 16 18 O -0.54 -16.65 12.98 -130.34 -1.69 -18.34 16 19 C -0.10 -3.31 4.54 -19.87 -0.09 -3.40 16 20 C -0.05 -1.46 9.23 22.27 0.21 -1.25 16 21 C -0.11 -2.39 10.05 22.27 0.22 -2.17 16 22 C -0.05 -1.42 9.56 22.27 0.21 -1.20 16 23 C -0.07 -2.22 6.84 36.37 0.25 -1.97 16 24 N 0.03 1.25 4.45 -46.47 -0.21 1.04 16 25 O -0.20 -8.17 18.37 18.88 0.35 -7.83 16 26 O -0.16 -5.59 18.46 18.89 0.35 -5.24 16 27 C -0.03 -0.90 7.75 22.27 0.17 -0.73 16 28 H 0.27 13.20 8.31 -92.71 -0.77 12.43 16 29 H 0.12 5.31 6.64 -2.39 -0.02 5.29 16 30 H 0.09 3.71 7.65 -2.39 -0.02 3.69 16 31 H 0.41 11.60 9.10 -74.06 -0.67 10.93 16 32 H 0.39 10.10 7.34 -74.06 -0.54 9.56 16 33 H 0.16 3.60 7.04 -2.91 -0.02 3.58 16 34 H 0.19 2.59 8.06 -2.91 -0.02 2.57 16 35 H 0.17 3.63 7.62 -2.91 -0.02 3.61 16 36 H 0.15 5.18 6.02 -2.91 -0.02 5.16 16 Total: -1.00 -66.79 322.59 3.15 -63.64 By element: Atomic # 1 Polarization: 34.73 SS G_CDS: -0.02 Total: 34.71 kcal Atomic # 6 Polarization: 27.74 SS G_CDS: 3.62 Total: 31.35 kcal Atomic # 7 Polarization: -62.00 SS G_CDS: -1.40 Total: -63.40 kcal Atomic # 8 Polarization: -106.49 SS G_CDS: -1.07 Total: -107.57 kcal Atomic # 14 Polarization: 39.24 SS G_CDS: 2.03 Total: 41.27 kcal Total: -66.79 3.15 -63.64 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610622032.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.155 kcal (2) G-P(sol) polarization free energy of solvation -66.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds