Wall clock time and date at job start Tue Mar 31 2020 13:34:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86794 * 120.00262 * 2 1 4 4 H 1.48504 * 109.46960 * 274.30750 * 3 2 1 5 5 H 1.48497 * 109.47081 * 34.30696 * 3 2 1 6 6 H 1.48501 * 109.47369 * 154.30929 * 3 2 1 7 7 C 1.38952 * 119.99414 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00804 * 341.15074 * 7 2 1 9 9 N 1.37099 * 119.99658 * 161.15385 * 7 2 1 10 10 C 1.46501 * 119.99861 * 322.97504 * 9 7 2 11 11 C 1.50707 * 109.47098 * 276.45287 * 10 9 7 12 12 O 1.20823 * 119.99798 * 0.02562 * 11 10 9 13 13 O 1.34229 * 120.00151 * 179.97438 * 11 10 9 14 14 C 1.34774 * 120.00363 * 142.97581 * 9 7 2 15 15 O 1.21291 * 119.99581 * 3.83201 * 14 9 7 16 16 C 1.50704 * 120.00399 * 183.82886 * 14 9 7 17 17 H 1.09002 * 109.46499 * 40.62678 * 16 14 9 18 18 O 1.42894 * 109.47248 * 160.62992 * 16 14 9 19 19 C 1.50703 * 109.47068 * 280.63162 * 16 14 9 20 20 C 1.38254 * 120.00113 * 281.27590 * 19 16 14 21 21 C 1.38216 * 120.00244 * 180.02562 * 20 19 16 22 22 C 1.38259 * 119.99677 * 359.94856 * 21 20 19 23 23 C 1.38213 * 120.00197 * 0.02562 * 22 21 20 24 24 N 1.48014 * 120.00052 * 180.02562 * 23 22 21 25 25 O 1.21805 * 120.00241 * 359.97438 * 24 23 22 26 26 O 1.21798 * 120.00053 * 179.97438 * 24 23 22 27 27 C 1.38217 * 119.99661 * 100.99753 * 19 16 14 28 28 H 0.97002 * 119.99565 * 0.02562 * 1 2 3 29 29 H 1.08997 * 109.47396 * 36.44834 * 10 9 7 30 30 H 1.08998 * 109.47648 * 156.45683 * 10 9 7 31 31 H 0.96699 * 117.00114 * 180.02562 * 13 11 10 32 32 H 0.96699 * 114.00086 * 60.00028 * 18 16 14 33 33 H 1.08000 * 119.99584 * 359.97438 * 20 19 16 34 34 H 1.07997 * 119.99791 * 179.97438 * 21 20 19 35 35 H 1.07997 * 119.99879 * 180.02562 * 22 21 20 36 36 H 1.07997 * 120.00399 * 359.97438 * 27 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 2.4046 2.0989 -1.3962 5 1 1.4942 2.6246 0.7891 6 1 3.5883 1.4155 0.6069 7 6 2.0088 -1.2034 0.0005 8 1 1.5123 -2.1135 0.3031 9 7 3.3246 -1.2355 -0.3830 10 6 3.7905 -0.3770 -1.4749 11 6 3.5069 -1.0455 -2.7955 12 8 2.9703 -2.1278 -2.8218 13 8 3.8495 -0.4382 -3.9425 14 6 4.1897 -2.0567 0.2444 15 8 3.7910 -2.8175 1.1009 16 6 5.6522 -2.0299 -0.1181 17 1 5.9706 -0.9981 -0.2673 18 8 6.4156 -2.6160 0.9381 19 6 5.8694 -2.8113 -1.3883 20 6 5.9139 -4.1926 -1.3511 21 6 6.1136 -4.9093 -2.5159 22 6 6.2677 -4.2448 -3.7185 23 6 6.2226 -2.8639 -3.7558 24 7 6.3870 -2.1526 -5.0434 25 8 6.5624 -2.7841 -6.0700 26 8 6.3468 -0.9357 -5.0763 27 6 6.0182 -2.1472 -2.5913 28 1 -0.4849 0.8401 -0.0004 29 1 3.2695 0.5795 -1.4327 30 1 4.8631 -0.2113 -1.3746 31 1 3.6470 -0.9059 -4.7643 32 1 6.1852 -3.5361 1.1263 33 1 5.7936 -4.7116 -0.4116 34 1 6.1488 -5.9883 -2.4867 35 1 6.4233 -4.8048 -4.6288 36 1 5.9784 -1.0683 -2.6211 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001610622033.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:34:24 Heat of formation + Delta-G solvation = -112.758424 kcal Electronic energy + Delta-G solvation = -29337.417866 eV Core-core repulsion = 24984.915849 eV Total energy + Delta-G solvation = -4352.502017 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.093 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.25331 -40.79238 -39.60128 -38.71931 -36.63685 -36.53646 -35.74487 -34.99987 -32.67927 -32.14102 -31.88991 -28.37806 -27.74096 -26.63882 -24.75942 -23.00771 -22.15286 -21.87442 -19.84738 -19.19452 -18.70897 -17.99309 -17.58175 -17.55127 -17.25997 -17.11135 -16.52695 -16.23406 -15.87676 -15.62777 -15.09295 -14.67673 -14.25580 -13.95303 -13.57928 -13.26882 -13.04920 -12.94413 -12.61434 -12.51539 -12.38700 -12.32961 -11.62967 -11.54255 -11.25779 -11.21629 -11.16425 -11.12427 -10.91752 -10.64369 -10.26931 -10.11730 -9.79565 -9.67076 -9.31918 -8.72816 -8.21420 -6.61500 -4.24033 -0.24907 0.65889 1.26548 1.31719 2.51588 2.75798 2.84781 3.00893 3.06534 3.06987 3.42659 3.78335 3.90604 4.16549 4.20022 4.32034 4.48713 4.58663 4.65772 4.72937 4.81041 4.97964 5.06964 5.20489 5.28954 5.39094 5.48070 5.62301 5.71863 5.87251 6.03533 6.36533 6.75214 7.15284 7.41576 7.61295 7.91306 8.11493 8.22049 8.60670 8.98302 9.26704 10.49559 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.014158 B = 0.006377 C = 0.005090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1977.230332 B = 4390.030524 C = 5499.487059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.849 5.849 2 C 0.061 3.939 3 Si 0.860 3.140 4 H -0.266 1.266 5 H -0.276 1.276 6 H -0.257 1.257 7 C -0.315 4.315 8 H 0.113 0.887 9 N -0.435 5.435 10 C 0.088 3.912 11 C 0.451 3.549 12 O -0.481 6.481 13 O -0.514 6.514 14 C 0.451 3.549 15 O -0.536 6.536 16 C 0.128 3.872 17 H 0.127 0.873 18 O -0.527 6.527 19 C -0.102 4.102 20 C -0.048 4.048 21 C -0.108 4.108 22 C -0.055 4.055 23 C -0.037 4.037 24 N 0.028 4.972 25 O -0.172 6.172 26 O -0.141 6.141 27 C -0.061 4.061 28 H 0.278 0.722 29 H 0.109 0.891 30 H 0.104 0.896 31 H 0.398 0.602 32 H 0.382 0.618 33 H 0.145 0.855 34 H 0.150 0.850 35 H 0.153 0.847 36 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.687 -3.855 -6.403 15.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.484 5.484 2 C -0.147 4.147 3 Si 0.687 3.313 4 H -0.193 1.193 5 H -0.202 1.202 6 H -0.181 1.181 7 C -0.442 4.442 8 H 0.131 0.869 9 N -0.158 5.158 10 C -0.037 4.037 11 C 0.289 3.711 12 O -0.366 6.366 13 O -0.325 6.325 14 C 0.238 3.762 15 O -0.416 6.416 16 C 0.065 3.935 17 H 0.144 0.856 18 O -0.333 6.333 19 C -0.104 4.104 20 C -0.066 4.066 21 C -0.127 4.127 22 C -0.075 4.075 23 C -0.120 4.120 24 N 0.548 4.452 25 O -0.384 6.384 26 O -0.361 6.361 27 C -0.080 4.080 28 H 0.089 0.911 29 H 0.126 0.874 30 H 0.122 0.878 31 H 0.256 0.744 32 H 0.232 0.768 33 H 0.163 0.837 34 H 0.168 0.832 35 H 0.171 0.829 36 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 13.398 -4.051 -4.943 14.844 hybrid contribution -0.263 0.413 -1.152 1.252 sum 13.134 -3.638 -6.096 14.930 Atomic orbital electron populations 1.69706 1.06081 1.28308 1.44298 1.25371 0.95340 0.98252 0.95735 0.87197 0.81519 0.84093 0.78511 1.19302 1.20172 1.18103 1.19076 0.82807 0.96870 1.45451 0.86940 1.43377 1.09758 1.37295 1.25356 1.21749 1.01737 0.96626 0.83619 1.24254 0.75754 0.84726 0.86336 1.90730 1.37336 1.21192 1.87359 1.84625 1.77625 1.53565 1.16705 1.20624 0.86642 0.85052 0.83877 1.90604 1.77824 1.39594 1.33604 1.20865 0.91647 0.97535 0.83487 0.85566 1.86600 1.60666 1.32597 1.53429 1.20422 1.00070 0.95015 0.94881 1.21398 0.92204 0.93185 0.99819 1.21171 0.99632 1.01099 0.90762 1.21058 0.94739 0.91198 1.00457 1.20975 1.14222 0.92959 0.83847 1.43593 0.97709 1.01311 1.02605 1.94528 1.53001 1.68269 1.22630 1.94587 1.53095 0.95252 1.93178 1.20986 0.95078 1.01953 0.89978 0.91086 0.87362 0.87819 0.74421 0.76767 0.83717 0.83213 0.82928 0.82754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.68 13.96 55.50 0.77 -22.90 16 2 C 0.06 1.60 5.38 -17.47 -0.09 1.51 16 3 Si 0.86 18.67 24.81 -169.99 -4.22 14.45 16 4 H -0.27 -5.36 6.72 56.52 0.38 -4.98 16 5 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 6 H -0.26 -5.26 7.10 56.52 0.40 -4.86 16 7 C -0.32 -8.54 9.22 -14.93 -0.14 -8.68 16 8 H 0.11 3.49 7.87 -52.49 -0.41 3.07 16 9 N -0.44 -9.87 1.76 -116.09 -0.20 -10.08 16 10 C 0.09 1.68 4.48 -5.19 -0.02 1.66 16 11 C 0.45 8.47 5.14 36.01 0.18 8.65 16 12 O -0.48 -10.60 16.94 -18.75 -0.32 -10.92 16 13 O -0.51 -7.95 11.87 -44.10 -0.52 -8.47 16 14 C 0.45 9.52 6.86 -10.98 -0.08 9.44 16 15 O -0.54 -13.04 16.17 -13.57 -0.22 -13.25 16 16 C 0.13 2.00 2.93 -29.03 -0.09 1.91 16 17 H 0.13 1.72 6.35 -51.93 -0.33 1.39 16 18 O -0.53 -7.68 12.98 -54.35 -0.71 -8.38 16 19 C -0.10 -1.42 4.70 -104.62 -0.49 -1.91 16 20 C -0.05 -0.57 9.30 -39.58 -0.37 -0.94 16 21 C -0.11 -1.09 10.05 -39.58 -0.40 -1.48 16 22 C -0.06 -0.62 9.56 -39.58 -0.38 -1.00 16 23 C -0.04 -0.50 6.85 -79.95 -0.55 -1.04 16 24 N 0.03 0.40 4.45 33.96 0.15 0.55 16 25 O -0.17 -2.48 18.45 -29.46 -0.54 -3.03 16 26 O -0.14 -2.07 17.24 -34.07 -0.59 -2.66 16 27 C -0.06 -0.83 5.77 -39.58 -0.23 -1.06 16 28 H 0.28 7.13 8.31 -40.82 -0.34 6.79 16 29 H 0.11 2.15 2.63 -51.93 -0.14 2.01 16 30 H 0.10 1.53 4.13 -51.93 -0.21 1.31 16 31 H 0.40 5.12 9.10 45.56 0.41 5.54 16 32 H 0.38 4.62 7.15 45.56 0.33 4.95 16 33 H 0.15 1.44 6.84 -52.49 -0.36 1.09 16 34 H 0.15 0.99 8.06 -52.49 -0.42 0.57 16 35 H 0.15 1.40 7.61 -52.49 -0.40 1.00 16 36 H 0.16 2.01 5.22 -52.49 -0.27 1.74 16 LS Contribution 313.06 15.07 4.72 4.72 Total: -1.00 -33.60 313.06 -5.28 -38.89 By element: Atomic # 1 Polarization: 14.99 SS G_CDS: -0.96 Total: 14.03 kcal Atomic # 6 Polarization: 9.70 SS G_CDS: -2.64 Total: 7.06 kcal Atomic # 7 Polarization: -33.15 SS G_CDS: 0.72 Total: -32.43 kcal Atomic # 8 Polarization: -43.81 SS G_CDS: -2.90 Total: -46.71 kcal Atomic # 14 Polarization: 18.67 SS G_CDS: -4.22 Total: 14.45 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -33.60 -5.28 -38.89 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610622033.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.871 kcal (2) G-P(sol) polarization free energy of solvation -33.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds