Wall clock time and date at job start Tue Mar 31 2020 13:34:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86794 * 120.00262 * 2 1 4 4 H 1.48504 * 109.46960 * 274.30750 * 3 2 1 5 5 H 1.48497 * 109.47081 * 34.30696 * 3 2 1 6 6 H 1.48501 * 109.47369 * 154.30929 * 3 2 1 7 7 C 1.38952 * 119.99414 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00804 * 341.15074 * 7 2 1 9 9 N 1.37099 * 119.99658 * 161.15385 * 7 2 1 10 10 C 1.46501 * 119.99861 * 322.97504 * 9 7 2 11 11 C 1.50707 * 109.47098 * 276.45287 * 10 9 7 12 12 O 1.20823 * 119.99798 * 0.02562 * 11 10 9 13 13 O 1.34229 * 120.00151 * 179.97438 * 11 10 9 14 14 C 1.34774 * 120.00363 * 142.97581 * 9 7 2 15 15 O 1.21291 * 119.99581 * 3.83201 * 14 9 7 16 16 C 1.50704 * 120.00399 * 183.82886 * 14 9 7 17 17 H 1.09002 * 109.46499 * 40.62678 * 16 14 9 18 18 O 1.42894 * 109.47248 * 160.62992 * 16 14 9 19 19 C 1.50703 * 109.47068 * 280.63162 * 16 14 9 20 20 C 1.38254 * 120.00113 * 281.27590 * 19 16 14 21 21 C 1.38216 * 120.00244 * 180.02562 * 20 19 16 22 22 C 1.38259 * 119.99677 * 359.94856 * 21 20 19 23 23 C 1.38213 * 120.00197 * 0.02562 * 22 21 20 24 24 N 1.48014 * 120.00052 * 180.02562 * 23 22 21 25 25 O 1.21805 * 120.00241 * 359.97438 * 24 23 22 26 26 O 1.21798 * 120.00053 * 179.97438 * 24 23 22 27 27 C 1.38217 * 119.99661 * 100.99753 * 19 16 14 28 28 H 0.97002 * 119.99565 * 0.02562 * 1 2 3 29 29 H 1.08997 * 109.47396 * 36.44834 * 10 9 7 30 30 H 1.08998 * 109.47648 * 156.45683 * 10 9 7 31 31 H 0.96699 * 117.00114 * 180.02562 * 13 11 10 32 32 H 0.96699 * 114.00086 * 60.00028 * 18 16 14 33 33 H 1.08000 * 119.99584 * 359.97438 * 20 19 16 34 34 H 1.07997 * 119.99791 * 179.97438 * 21 20 19 35 35 H 1.07997 * 119.99879 * 180.02562 * 22 21 20 36 36 H 1.07997 * 120.00399 * 359.97438 * 27 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 2.4046 2.0989 -1.3962 5 1 1.4942 2.6246 0.7891 6 1 3.5883 1.4155 0.6069 7 6 2.0088 -1.2034 0.0005 8 1 1.5123 -2.1135 0.3031 9 7 3.3246 -1.2355 -0.3830 10 6 3.7905 -0.3770 -1.4749 11 6 3.5069 -1.0455 -2.7955 12 8 2.9703 -2.1278 -2.8218 13 8 3.8495 -0.4382 -3.9425 14 6 4.1897 -2.0567 0.2444 15 8 3.7910 -2.8175 1.1009 16 6 5.6522 -2.0299 -0.1181 17 1 5.9706 -0.9981 -0.2673 18 8 6.4156 -2.6160 0.9381 19 6 5.8694 -2.8113 -1.3883 20 6 5.9139 -4.1926 -1.3511 21 6 6.1136 -4.9093 -2.5159 22 6 6.2677 -4.2448 -3.7185 23 6 6.2226 -2.8639 -3.7558 24 7 6.3870 -2.1526 -5.0434 25 8 6.5624 -2.7841 -6.0700 26 8 6.3468 -0.9357 -5.0763 27 6 6.0182 -2.1472 -2.5913 28 1 -0.4849 0.8401 -0.0004 29 1 3.2695 0.5795 -1.4327 30 1 4.8631 -0.2113 -1.3746 31 1 3.6470 -0.9059 -4.7643 32 1 6.1852 -3.5361 1.1263 33 1 5.7936 -4.7116 -0.4116 34 1 6.1488 -5.9883 -2.4867 35 1 6.4233 -4.8048 -4.6288 36 1 5.9784 -1.0683 -2.6211 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001610622033.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:34:24 Heat of formation + Delta-G solvation = -137.919614 kcal Electronic energy + Delta-G solvation = -29338.508937 eV Core-core repulsion = 24984.915849 eV Total energy + Delta-G solvation = -4353.593088 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.093 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.30492 -42.16331 -40.92054 -40.07635 -37.91380 -37.65300 -37.18404 -36.67521 -34.43569 -33.21557 -32.99297 -29.96622 -29.12577 -27.65933 -26.43807 -23.98053 -23.43776 -23.18858 -21.34346 -20.28718 -19.77683 -19.45153 -19.33832 -18.72255 -18.61225 -18.34744 -17.86099 -17.57209 -17.20254 -16.81069 -16.63060 -16.02898 -15.53131 -15.23862 -14.89139 -14.69154 -14.63255 -14.37519 -14.12762 -13.88545 -13.52800 -13.38171 -12.96161 -12.84079 -12.68495 -12.64815 -12.47251 -12.25993 -12.23971 -12.08334 -11.92630 -11.76774 -11.18513 -10.86728 -10.64555 -10.16601 -10.07387 -8.59818 -6.29668 -1.26138 -0.28294 0.25536 0.30182 1.03627 1.11656 1.22955 1.36721 1.40645 1.88220 2.07007 2.09755 2.37205 2.83170 3.01455 3.15946 3.27590 3.40754 3.54484 3.62835 3.70684 3.78544 3.85207 3.97106 4.15693 4.23713 4.42188 4.58474 4.81778 4.93872 5.10005 5.30926 5.38866 5.41451 5.90635 6.20132 6.39358 6.52587 6.70308 6.81802 7.03125 7.47643 8.56703 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.014158 B = 0.006377 C = 0.005090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1977.230332 B = 4390.030524 C = 5499.487059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.009 3.991 3 Si 0.924 3.076 4 H -0.233 1.233 5 H -0.278 1.278 6 H -0.232 1.232 7 C -0.331 4.331 8 H 0.047 0.953 9 N -0.448 5.448 10 C 0.082 3.918 11 C 0.461 3.539 12 O -0.521 6.521 13 O -0.497 6.497 14 C 0.448 3.552 15 O -0.580 6.580 16 C 0.144 3.856 17 H 0.152 0.848 18 O -0.527 6.527 19 C -0.119 4.119 20 C -0.055 4.055 21 C -0.097 4.097 22 C -0.051 4.051 23 C -0.053 4.053 24 N 0.031 4.969 25 O -0.180 6.180 26 O -0.153 6.153 27 C -0.067 4.067 28 H 0.283 0.717 29 H 0.107 0.893 30 H 0.152 0.848 31 H 0.413 0.587 32 H 0.393 0.607 33 H 0.160 0.840 34 H 0.189 0.811 35 H 0.174 0.826 36 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.670 -3.171 -7.611 18.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.194 4.194 3 Si 0.745 3.255 4 H -0.159 1.159 5 H -0.204 1.204 6 H -0.155 1.155 7 C -0.459 4.459 8 H 0.065 0.935 9 N -0.171 5.171 10 C -0.042 4.042 11 C 0.301 3.699 12 O -0.409 6.409 13 O -0.309 6.309 14 C 0.237 3.763 15 O -0.462 6.462 16 C 0.081 3.919 17 H 0.170 0.830 18 O -0.334 6.334 19 C -0.121 4.121 20 C -0.073 4.073 21 C -0.116 4.116 22 C -0.070 4.070 23 C -0.136 4.136 24 N 0.548 4.452 25 O -0.391 6.391 26 O -0.371 6.371 27 C -0.086 4.086 28 H 0.093 0.907 29 H 0.124 0.876 30 H 0.169 0.831 31 H 0.272 0.728 32 H 0.244 0.756 33 H 0.177 0.823 34 H 0.206 0.794 35 H 0.192 0.808 36 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 16.418 -3.359 -6.196 17.867 hybrid contribution -1.171 -0.011 -0.802 1.420 sum 15.247 -3.370 -6.999 17.112 Atomic orbital electron populations 1.69844 1.08226 1.29689 1.46289 1.26230 0.96082 1.02341 0.94752 0.86183 0.80818 0.78030 0.80435 1.15881 1.20381 1.15497 1.18565 0.85115 0.95154 1.47030 0.93491 1.43346 1.08386 1.38416 1.26948 1.21935 1.04363 0.95377 0.82571 1.24099 0.74727 0.84002 0.87053 1.90729 1.39229 1.23009 1.87918 1.84571 1.76812 1.52895 1.16572 1.21723 0.88969 0.82980 0.82593 1.90571 1.79419 1.40950 1.35284 1.20713 0.87092 0.99553 0.84546 0.83044 1.86588 1.59943 1.33553 1.53309 1.20269 1.02089 0.95780 0.93988 1.21769 0.91338 0.92789 1.01389 1.21615 0.97582 1.02911 0.89446 1.21472 0.93177 0.90577 1.01802 1.21127 1.15443 0.93764 0.83222 1.43716 0.97341 1.01244 1.02864 1.94521 1.53291 1.68228 1.23084 1.94574 1.53594 0.95626 1.93343 1.21013 0.95309 1.02335 0.89985 0.90723 0.87608 0.83110 0.72765 0.75594 0.82276 0.79374 0.80848 0.82265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -52.70 13.96 21.66 0.30 -52.40 16 2 C 0.01 0.49 5.38 84.93 0.46 0.94 16 3 Si 0.92 37.54 24.81 68.60 1.70 39.24 16 4 H -0.23 -8.27 6.72 99.48 0.67 -7.60 16 5 H -0.28 -11.31 7.11 99.48 0.71 -10.60 16 6 H -0.23 -8.45 7.10 99.48 0.71 -7.74 16 7 C -0.33 -18.76 9.22 84.04 0.77 -17.98 16 8 H 0.05 3.19 7.87 -2.91 -0.02 3.16 16 9 N -0.45 -20.31 1.76 -639.59 -1.12 -21.43 16 10 C 0.08 2.93 4.48 85.64 0.38 3.32 16 11 C 0.46 16.54 5.14 71.24 0.37 16.91 16 12 O -0.52 -22.83 16.94 21.97 0.37 -22.46 16 13 O -0.50 -14.04 11.87 -46.78 -0.56 -14.59 16 14 C 0.45 18.81 6.86 87.66 0.60 19.41 16 15 O -0.58 -29.00 16.17 15.22 0.25 -28.76 16 16 C 0.14 4.16 2.93 29.10 0.09 4.25 16 17 H 0.15 3.53 6.35 -2.39 -0.02 3.52 16 18 O -0.53 -14.14 12.98 -130.70 -1.70 -15.83 16 19 C -0.12 -3.03 4.70 -19.86 -0.09 -3.12 16 20 C -0.05 -1.16 9.30 22.27 0.21 -0.95 16 21 C -0.10 -1.61 10.05 22.27 0.22 -1.39 16 22 C -0.05 -0.98 9.56 22.27 0.21 -0.77 16 23 C -0.05 -1.26 6.85 36.38 0.25 -1.01 16 24 N 0.03 0.80 4.45 -46.46 -0.21 0.59 16 25 O -0.18 -4.80 18.45 18.88 0.35 -4.45 16 26 O -0.15 -4.12 17.24 23.30 0.40 -3.72 16 27 C -0.07 -1.66 5.77 22.27 0.13 -1.53 16 28 H 0.28 15.04 8.31 -92.71 -0.77 14.27 16 29 H 0.11 3.87 2.63 -2.39 -0.01 3.86 16 30 H 0.15 3.84 4.13 -2.39 -0.01 3.83 16 31 H 0.41 9.64 9.10 -74.06 -0.67 8.96 16 32 H 0.39 8.80 7.15 -74.06 -0.53 8.27 16 33 H 0.16 2.80 6.84 -2.91 -0.02 2.78 16 34 H 0.19 1.61 8.06 -2.91 -0.02 1.59 16 35 H 0.17 2.55 7.61 -2.91 -0.02 2.53 16 36 H 0.16 3.61 5.22 -2.91 -0.02 3.60 16 Total: -1.00 -78.67 313.06 3.36 -75.31 By element: Atomic # 1 Polarization: 30.46 SS G_CDS: -0.03 Total: 30.43 kcal Atomic # 6 Polarization: 14.48 SS G_CDS: 3.60 Total: 18.07 kcal Atomic # 7 Polarization: -72.21 SS G_CDS: -1.03 Total: -73.24 kcal Atomic # 8 Polarization: -88.94 SS G_CDS: -0.88 Total: -89.82 kcal Atomic # 14 Polarization: 37.54 SS G_CDS: 1.70 Total: 39.24 kcal Total: -78.67 3.36 -75.31 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610622033.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.612 kcal (2) G-P(sol) polarization free energy of solvation -78.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds