Wall clock time and date at job start Tue Mar 31 2020 14:40:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31560 * 1 3 3 Si 1.86798 * 119.99996 * 2 1 4 4 H 1.48498 * 109.47292 * 269.99645 * 3 2 1 5 5 H 1.48504 * 109.46935 * 30.00026 * 3 2 1 6 6 H 1.48502 * 109.46777 * 149.99865 * 3 2 1 7 7 C 1.38657 * 119.99852 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99766 * 180.02562 * 7 2 1 9 9 O 1.34831 * 120.00234 * 0.02562 * 7 2 1 10 10 C 1.35749 * 117.00293 * 184.72092 * 9 7 2 11 11 C 1.38949 * 120.03359 * 353.15221 * 10 9 7 12 12 C 1.38122 * 120.07439 * 179.69843 * 11 10 9 13 13 C 1.38196 * 120.13846 * 0.59456 * 12 11 10 14 14 C 1.38929 * 120.06602 * 359.67909 * 13 12 11 15 15 N 1.39888 * 120.03768 * 180.02562 * 14 13 12 16 16 C 1.34779 * 120.00236 * 224.17430 * 15 14 13 17 17 S 1.71198 * 119.99642 * 356.39894 * 16 15 14 18 18 N 1.34772 * 119.99978 * 176.39284 * 16 15 14 19 19 C 1.46501 * 119.99780 * 180.02562 * 18 16 15 20 20 C 1.53003 * 109.47122 * 180.02562 * 19 18 16 21 21 C 1.52997 * 109.47411 * 179.97438 * 20 19 18 22 22 C 1.50696 * 109.47332 * 179.97438 * 21 20 19 23 23 O 1.20820 * 120.00171 * 0.02562 * 22 21 20 24 24 O 1.34228 * 119.99773 * 179.97438 * 22 21 20 25 25 C 1.38727 * 120.03506 * 173.41964 * 10 9 7 26 26 H 0.96997 * 119.99813 * 0.02562 * 1 2 3 27 27 H 1.08006 * 119.95812 * 359.97335 * 11 10 9 28 28 H 1.08009 * 119.93220 * 180.27548 * 12 11 10 29 29 H 1.08001 * 119.96673 * 179.70454 * 13 12 11 30 30 H 0.97004 * 119.99808 * 44.18008 * 15 14 13 31 31 H 0.96997 * 120.00533 * 0.02562 * 18 16 15 32 32 H 1.09001 * 109.47158 * 299.99967 * 19 18 16 33 33 H 1.09003 * 109.47498 * 60.00045 * 19 18 16 34 34 H 1.09001 * 109.47063 * 300.00008 * 20 19 18 35 35 H 1.09003 * 109.46911 * 59.99669 * 20 19 18 36 36 H 1.09001 * 109.47146 * 300.00120 * 21 20 19 37 37 H 1.09005 * 109.46844 * 59.99349 * 21 20 19 38 38 H 0.96705 * 116.99859 * 180.02562 * 24 22 21 39 39 H 1.08003 * 120.06628 * 359.97438 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4972 2.0464 -1.4000 5 1 1.4470 2.6526 0.7001 6 1 3.5471 1.4401 0.7001 7 6 2.0089 -1.2008 0.0005 8 1 3.0888 -1.2008 0.0010 9 8 1.3347 -2.3685 0.0005 10 6 2.0704 -3.5049 0.1006 11 6 3.4577 -3.4417 0.0538 12 6 4.2073 -4.5968 0.1618 13 6 3.5803 -5.8200 0.3044 14 6 2.1934 -5.8906 0.3462 15 7 1.5593 -7.1291 0.4910 16 6 0.4879 -7.4307 -0.2689 17 16 -0.1535 -6.2643 -1.3455 18 7 -0.0785 -8.6505 -0.1814 19 6 -1.2428 -8.9784 -1.0079 20 6 -1.6867 -10.4135 -0.7173 21 6 -2.9030 -10.7559 -1.5799 22 6 -3.3398 -12.1695 -1.2940 23 8 -2.7401 -12.8348 -0.4832 24 8 -4.3957 -12.6892 -1.9396 25 6 1.4379 -4.7312 0.2441 26 1 -0.4850 0.8400 -0.0004 27 1 3.9505 -2.4877 -0.0627 28 1 5.2856 -4.5445 0.1296 29 1 4.1690 -6.7220 0.3838 30 1 1.8908 -7.7709 1.1385 31 1 0.2847 -9.3113 0.4287 32 1 -2.0576 -8.2925 -0.7763 33 1 -0.9784 -8.8859 -2.0613 34 1 -0.8720 -11.0997 -0.9486 35 1 -1.9512 -10.5057 0.3362 36 1 -3.7175 -10.0696 -1.3481 37 1 -2.6388 -10.6635 -2.6334 38 1 -4.6383 -13.5998 -1.7224 39 1 0.3596 -4.7833 0.2769 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001610623516.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:09 Heat of formation + Delta-G solvation = -69.343635 kcal Electronic energy + Delta-G solvation = -23378.693060 eV Core-core repulsion = 19606.659615 eV Total energy + Delta-G solvation = -3772.033445 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.098 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.74406 -39.74763 -38.53164 -37.09810 -36.60327 -35.20434 -33.32731 -32.18482 -29.58129 -28.90248 -27.47059 -25.23827 -24.12278 -23.36175 -21.73673 -21.47649 -21.09863 -18.71135 -18.58361 -18.19723 -17.33385 -17.00556 -16.89242 -16.19479 -15.65781 -15.31704 -15.00275 -14.86361 -14.63920 -14.14455 -13.84261 -13.62229 -13.47998 -13.08927 -12.82834 -12.65109 -12.31271 -12.07380 -12.01360 -11.67660 -11.55886 -11.21347 -11.10825 -11.08317 -10.86794 -10.78755 -10.72104 -10.41456 -9.61312 -9.29134 -8.76716 -8.08290 -7.61187 -7.18260 -6.56602 -6.35169 -3.92860 1.30189 1.71102 1.99934 2.32131 2.40668 2.45470 2.79109 3.19022 3.19365 3.24234 3.50469 4.04508 4.22785 4.38236 4.39601 4.60964 4.88015 4.98947 5.05050 5.17940 5.27211 5.34106 5.55936 5.58588 5.65072 5.77658 5.90989 6.01036 6.16555 6.21854 6.39825 6.47015 6.85201 7.03234 7.05909 7.12915 7.37743 7.38552 7.43516 7.55277 7.86455 8.09109 9.09396 9.82403 10.82563 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.022228 B = 0.002230 C = 0.002056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.360545 B =12552.377183 C =13615.320687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.038 3.962 3 Si 0.940 3.060 4 H -0.273 1.273 5 H -0.278 1.278 6 H -0.268 1.268 7 C -0.389 4.389 8 H 0.092 0.908 9 O -0.170 6.170 10 C 0.158 3.842 11 C -0.230 4.230 12 C -0.071 4.071 13 C -0.216 4.216 14 C 0.146 3.854 15 N -0.622 5.622 16 C 0.547 3.453 17 S -0.598 6.598 18 N -0.691 5.691 19 C 0.126 3.874 20 C -0.124 4.124 21 C -0.110 4.110 22 C 0.481 3.519 23 O -0.518 6.518 24 O -0.517 6.517 25 C -0.131 4.131 26 H 0.269 0.731 27 H 0.128 0.872 28 H 0.112 0.888 29 H 0.105 0.895 30 H 0.401 0.599 31 H 0.395 0.605 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.115 0.885 37 H 0.115 0.885 38 H 0.411 0.589 39 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.401 -23.317 0.167 23.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.166 4.166 3 Si 0.765 3.235 4 H -0.199 1.199 5 H -0.204 1.204 6 H -0.192 1.192 7 C -0.466 4.466 8 H 0.109 0.891 9 O -0.073 6.073 10 C 0.103 3.897 11 C -0.250 4.250 12 C -0.090 4.090 13 C -0.237 4.237 14 C 0.054 3.946 15 N -0.246 5.246 16 C 0.191 3.809 17 S -0.470 6.470 18 N -0.321 5.321 19 C 0.002 3.998 20 C -0.162 4.162 21 C -0.148 4.148 22 C 0.323 3.677 23 O -0.407 6.407 24 O -0.329 6.329 25 C -0.153 4.153 26 H 0.079 0.921 27 H 0.146 0.854 28 H 0.130 0.870 29 H 0.123 0.877 30 H 0.238 0.762 31 H 0.231 0.769 32 H 0.109 0.891 33 H 0.109 0.891 34 H 0.098 0.902 35 H 0.098 0.902 36 H 0.134 0.866 37 H 0.133 0.867 38 H 0.270 0.730 39 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -3.106 -22.077 -0.550 22.301 hybrid contribution 1.052 -1.146 1.222 1.978 sum -2.055 -23.222 0.671 23.323 Atomic orbital electron populations 1.70061 1.05917 1.27532 1.45818 1.25289 0.95821 0.98777 0.96724 0.85729 0.78867 0.80228 0.78677 1.19914 1.20350 1.19242 1.21330 0.91748 0.80888 1.52614 0.89090 1.84007 1.33974 1.11166 1.78128 1.19036 0.89795 0.87862 0.92992 1.21231 0.93890 0.99081 1.10800 1.20424 0.98358 0.91632 0.98608 1.20228 0.91642 0.97730 1.14112 1.16839 0.90609 0.81780 1.05388 1.42148 1.27679 1.17748 1.36988 1.22471 0.83622 0.87908 0.86917 1.93782 1.69305 1.42970 1.40899 1.44836 1.32228 1.11579 1.43507 1.21639 0.87141 0.94894 0.96120 1.21641 0.97452 0.96060 1.01082 1.21199 0.99884 0.90009 1.03745 1.23475 0.76825 0.90159 0.77207 1.90741 1.54353 1.62205 1.33378 1.84544 1.47453 1.35943 1.64931 1.20415 1.01466 0.88432 1.05032 0.92087 0.85430 0.87038 0.87697 0.76235 0.76920 0.89066 0.89150 0.90215 0.90164 0.86647 0.86714 0.72972 0.83724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.84 13.67 55.48 0.76 -25.08 16 2 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 3 Si 0.94 20.87 29.55 -169.99 -5.02 15.85 16 4 H -0.27 -5.95 7.11 56.52 0.40 -5.54 16 5 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 6 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 7 C -0.39 -11.08 9.49 30.89 0.29 -10.79 16 8 H 0.09 2.37 5.21 -52.49 -0.27 2.10 16 9 O -0.17 -5.01 9.75 0.05 0.00 -5.01 16 10 C 0.16 3.95 6.64 -39.14 -0.26 3.69 16 11 C -0.23 -5.03 9.16 -39.36 -0.36 -5.39 16 12 C -0.07 -1.28 10.03 -39.64 -0.40 -1.68 16 13 C -0.22 -3.62 9.97 -39.34 -0.39 -4.01 16 14 C 0.15 2.63 5.96 -83.73 -0.50 2.13 16 15 N -0.62 -8.40 5.32 -11.42 -0.06 -8.46 16 16 C 0.55 7.75 7.84 -86.92 -0.68 7.07 16 17 S -0.60 -12.00 24.76 -107.50 -2.66 -14.66 16 18 N -0.69 -6.31 5.56 -62.03 -0.34 -6.65 16 19 C 0.13 1.00 5.13 -4.04 -0.02 0.98 16 20 C -0.12 -0.68 4.62 -26.73 -0.12 -0.81 16 21 C -0.11 -0.51 5.81 -27.89 -0.16 -0.67 16 22 C 0.48 3.14 8.33 36.00 0.30 3.44 16 23 O -0.52 -5.07 16.74 -18.75 -0.31 -5.39 16 24 O -0.52 -2.53 13.42 -39.25 -0.53 -3.05 16 25 C -0.13 -2.93 7.80 -39.21 -0.31 -3.24 16 26 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 27 H 0.13 2.77 5.65 -52.48 -0.30 2.47 16 28 H 0.11 1.66 8.06 -52.48 -0.42 1.24 16 29 H 0.10 1.42 8.06 -52.49 -0.42 1.00 16 30 H 0.40 3.68 8.84 -40.82 -0.36 3.32 16 31 H 0.39 2.33 8.49 -40.82 -0.35 1.98 16 32 H 0.09 0.83 7.99 -51.93 -0.41 0.42 16 33 H 0.09 0.80 7.99 -51.93 -0.42 0.39 16 34 H 0.08 0.45 8.10 -51.93 -0.42 0.03 16 35 H 0.08 0.47 8.10 -51.93 -0.42 0.04 16 36 H 0.12 0.41 8.14 -51.93 -0.42 -0.02 16 37 H 0.11 0.39 8.14 -51.93 -0.42 -0.04 16 38 H 0.41 0.44 9.10 45.56 0.41 0.86 16 39 H 0.15 3.49 6.00 -41.88 -0.25 3.23 16 LS Contribution 352.56 15.07 5.31 5.31 Total: -1.00 -38.60 352.56 -9.18 -47.78 By element: Atomic # 1 Polarization: 11.27 SS G_CDS: -3.61 Total: 7.66 kcal Atomic # 6 Polarization: -5.59 SS G_CDS: -2.71 Total: -8.30 kcal Atomic # 7 Polarization: -40.55 SS G_CDS: 0.35 Total: -40.19 kcal Atomic # 8 Polarization: -12.61 SS G_CDS: -0.84 Total: -13.45 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Atomic # 16 Polarization: -12.00 SS G_CDS: -2.66 Total: -14.66 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -38.60 -9.18 -47.78 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610623516.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.565 kcal (2) G-P(sol) polarization free energy of solvation -38.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds