Wall clock time and date at job start Tue Mar 31 2020 14:13:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31566 * 1 3 3 Si 1.86807 * 119.99696 * 2 1 4 4 H 1.48499 * 109.47106 * 239.99828 * 3 2 1 5 5 H 1.48502 * 109.47083 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47137 * 119.99610 * 3 2 1 7 7 C 1.38635 * 120.00602 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00291 * 180.02562 * 7 2 1 9 9 O 1.34807 * 119.99668 * 0.02562 * 7 2 1 10 10 C 1.35772 * 116.99747 * 185.39557 * 9 7 2 11 11 C 1.38928 * 119.99282 * 185.63860 * 10 9 7 12 12 C 1.37982 * 120.00220 * 179.73065 * 11 10 9 13 13 C 1.38967 * 119.99850 * 0.57171 * 12 11 10 14 14 N 1.39817 * 120.00836 * 179.72353 * 13 12 11 15 15 C 1.34771 * 120.00246 * 326.26550 * 14 13 12 16 16 O 1.21676 * 119.99924 * 354.78402 * 15 14 13 17 17 C 1.47002 * 120.00178 * 174.78084 * 15 14 13 18 18 O 1.34558 * 127.10725 * 359.68996 * 17 15 14 19 19 N 1.21061 * 113.48831 * 179.81133 * 18 17 15 20 20 C 1.31105 * 112.49249 * 0.47069 * 19 18 17 21 21 C 1.41227 * 136.56948 * 179.72102 * 20 19 18 22 22 C 1.35615 * 119.45631 * 179.97438 * 21 20 19 23 23 C 1.39819 * 122.00343 * 0.02562 * 22 21 20 24 24 C 1.35940 * 121.68789 * 359.95475 * 23 22 21 25 25 C 1.39237 * 127.10735 * 179.97438 * 17 15 14 26 26 C 1.38974 * 119.98414 * 359.70394 * 13 12 11 27 27 C 1.37973 * 119.99870 * 359.97438 * 26 13 12 28 28 H 0.96994 * 120.00375 * 0.02562 * 1 2 3 29 29 H 1.07997 * 119.99833 * 0.02562 * 11 10 9 30 30 H 1.08006 * 119.99955 * 180.27273 * 12 11 10 31 31 H 0.97000 * 120.00124 * 146.26639 * 14 13 12 32 32 H 1.07991 * 120.27379 * 0.02562 * 21 20 19 33 33 H 1.08000 * 118.99795 * 180.02562 * 22 21 20 34 34 H 1.07998 * 119.16195 * 179.97438 * 23 22 21 35 35 H 1.08004 * 120.30109 * 180.02562 * 24 23 22 36 36 H 1.08003 * 119.99872 * 179.97438 * 26 13 12 37 37 H 1.08000 * 120.00556 * 179.97438 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 3.1034 1.6965 -1.2125 5 1 1.2845 2.7465 -0.0006 6 1 3.1033 1.6966 1.2125 7 6 2.0090 -1.2005 0.0005 8 1 3.0890 -1.2005 0.0010 9 8 1.3350 -2.3680 0.0005 10 6 2.0699 -3.5039 0.1148 11 6 1.4534 -4.7440 0.0042 12 6 2.2009 -5.8985 0.1148 13 6 3.5686 -5.8209 0.3487 14 7 4.3253 -6.9907 0.4665 15 6 3.7815 -8.0921 1.0209 16 8 2.6661 -8.0424 1.5045 17 6 4.5358 -9.3537 1.0412 18 8 5.7680 -9.5709 0.5462 19 7 6.1565 -10.7071 0.7002 20 6 5.2730 -11.4612 1.3080 21 6 5.1881 -12.8074 1.7266 22 6 4.0656 -13.2420 2.3514 23 6 2.9797 -12.3962 2.5972 24 6 2.9930 -11.0897 2.2222 25 6 4.1206 -10.5722 1.5718 26 6 4.1841 -4.5803 0.4649 27 6 3.4373 -3.4261 0.3477 28 1 -0.4850 0.8400 -0.0004 29 1 0.3898 -4.8044 -0.1730 30 1 1.7223 -6.8625 0.0245 31 1 5.2418 -7.0095 0.1493 32 1 6.0106 -13.4849 1.5514 33 1 4.0088 -14.2727 2.6687 34 1 2.1081 -12.7909 3.0981 35 1 2.1418 -10.4562 2.4237 36 1 5.2469 -4.5198 0.6471 37 1 3.9154 -2.4619 0.4385 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001623869104.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:13:08 Heat of formation + Delta-G solvation = 60.636333 kcal Electronic energy + Delta-G solvation = -25021.393033 eV Core-core repulsion = 21119.551992 eV Total energy + Delta-G solvation = -3901.841042 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.094 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -45.07789 -40.26174 -38.84944 -38.66482 -36.62901 -34.25555 -33.20732 -32.64306 -32.24322 -30.65281 -30.30747 -28.11906 -25.74975 -25.27644 -23.91734 -23.46799 -22.32928 -21.17140 -20.24151 -18.94455 -18.37808 -18.13785 -17.97728 -17.40965 -16.71579 -16.19005 -15.64136 -15.09459 -14.71408 -14.61875 -14.48593 -14.28481 -14.07008 -13.64419 -13.49923 -13.08182 -12.87726 -12.62525 -12.58565 -12.44517 -11.94688 -11.70414 -11.63819 -11.16463 -11.09311 -10.99463 -10.78345 -10.53076 -10.26789 -9.87678 -9.81246 -9.35396 -8.78858 -8.43765 -8.29372 -7.02560 -6.49750 -4.07496 -0.38173 0.90500 1.54099 2.05887 2.12007 2.26675 2.86926 3.07629 3.11005 3.12547 3.14880 3.23479 3.31214 3.92853 3.96636 4.36626 4.47618 4.53481 4.68499 4.72688 5.03875 5.05530 5.15793 5.23694 5.48798 5.52453 5.66823 5.68528 5.86838 5.97077 6.02419 6.11854 6.15480 6.28976 6.69426 6.73183 6.83860 7.03002 7.14368 7.30463 7.43596 7.64797 7.69925 7.94046 8.01399 8.95165 9.64159 10.67722 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.037059 B = 0.002187 C = 0.002091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.372501 B =12798.987103 C =13384.727681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.040 3.960 3 Si 0.942 3.058 4 H -0.269 1.269 5 H -0.278 1.278 6 H -0.269 1.269 7 C -0.392 4.392 8 H 0.092 0.908 9 O -0.172 6.172 10 C 0.150 3.850 11 C -0.177 4.177 12 C -0.064 4.064 13 C 0.027 3.973 14 N -0.638 5.638 15 C 0.597 3.403 16 O -0.495 6.495 17 C -0.058 4.058 18 O 0.157 5.843 19 N -0.345 5.345 20 C 0.030 3.970 21 C -0.085 4.085 22 C -0.084 4.084 23 C -0.116 4.116 24 C -0.055 4.055 25 C -0.108 4.108 26 C -0.081 4.081 27 C -0.219 4.219 28 H 0.272 0.728 29 H 0.123 0.877 30 H 0.125 0.875 31 H 0.409 0.591 32 H 0.137 0.863 33 H 0.136 0.864 34 H 0.136 0.864 35 H 0.147 0.853 36 H 0.114 0.886 37 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.767 -21.800 3.042 24.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.165 4.165 3 Si 0.766 3.234 4 H -0.194 1.194 5 H -0.203 1.203 6 H -0.195 1.195 7 C -0.469 4.469 8 H 0.110 0.890 9 O -0.075 6.075 10 C 0.095 3.905 11 C -0.197 4.197 12 C -0.084 4.084 13 C -0.065 4.065 14 N -0.282 5.282 15 C 0.381 3.619 16 O -0.369 6.369 17 C -0.129 4.129 18 O 0.079 5.921 19 N -0.042 5.042 20 C -0.116 4.116 21 C -0.104 4.104 22 C -0.106 4.106 23 C -0.135 4.135 24 C -0.074 4.074 25 C -0.112 4.112 26 C -0.101 4.101 27 C -0.239 4.239 28 H 0.082 0.918 29 H 0.141 0.859 30 H 0.143 0.857 31 H 0.245 0.755 32 H 0.155 0.845 33 H 0.154 0.846 34 H 0.154 0.846 35 H 0.164 0.836 36 H 0.132 0.868 37 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 9.786 -21.860 2.874 24.122 hybrid contribution 0.462 0.680 0.207 0.848 sum 10.248 -21.180 3.082 23.730 Atomic orbital electron populations 1.70028 1.05986 1.27943 1.45381 1.25311 0.95861 0.98916 0.96433 0.85771 0.78717 0.79686 0.79216 1.19445 1.20261 1.19456 1.21283 0.91792 0.80815 1.52960 0.89016 1.84001 1.34253 1.11471 1.77774 1.19455 0.90341 0.88058 0.92628 1.20104 1.00064 0.89452 1.10104 1.20590 0.91965 0.98012 0.97807 1.17153 0.91677 0.84044 1.13662 1.43001 1.16527 1.10013 1.58617 1.16283 0.85356 0.80718 0.79584 1.90912 1.17891 1.82859 1.45280 1.24134 0.87701 0.96849 1.04255 1.84846 1.27158 1.23950 1.56103 1.73962 1.20932 0.90621 1.18725 1.21955 0.90983 0.97423 1.01285 1.20011 0.99547 0.90784 1.00040 1.20872 0.92495 1.00420 0.96812 1.20991 0.99059 0.93261 1.00155 1.20365 0.96081 0.95583 0.95400 1.20054 0.97327 0.91179 1.02683 1.20484 0.98904 0.90604 1.00151 1.20986 0.94137 0.98416 1.10366 0.91846 0.85928 0.85715 0.75533 0.84478 0.84579 0.84633 0.83565 0.86830 0.84916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.72 13.67 55.48 0.76 -23.96 16 2 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 3 Si 0.94 19.97 29.55 -169.99 -5.02 14.95 16 4 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 5 H -0.28 -5.79 7.11 56.52 0.40 -5.38 16 6 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 7 C -0.39 -10.63 9.44 30.88 0.29 -10.34 16 8 H 0.09 2.26 5.29 -52.49 -0.28 1.99 16 9 O -0.17 -4.78 9.75 0.05 0.00 -4.78 16 10 C 0.15 3.51 6.65 -39.07 -0.26 3.25 16 11 C -0.18 -3.72 9.98 -39.42 -0.39 -4.12 16 12 C -0.06 -1.19 8.64 -39.41 -0.34 -1.53 16 13 C 0.03 0.45 6.27 -83.67 -0.52 -0.08 16 14 N -0.64 -8.49 5.33 -10.92 -0.06 -8.55 16 15 C 0.60 8.39 7.53 -12.71 -0.10 8.29 16 16 O -0.49 -8.34 14.14 5.21 0.07 -8.27 16 17 C -0.06 -0.71 7.37 -35.66 -0.26 -0.97 16 18 O 0.16 1.82 10.92 15.74 0.17 2.00 16 19 N -0.35 -4.24 12.06 33.26 0.40 -3.84 16 20 C 0.03 0.34 7.60 -83.08 -0.63 -0.29 16 21 C -0.08 -0.72 10.09 -39.38 -0.40 -1.12 16 22 C -0.08 -0.57 9.89 -39.93 -0.39 -0.96 16 23 C -0.12 -0.88 9.92 -39.81 -0.39 -1.27 16 24 C -0.06 -0.57 9.87 -39.72 -0.39 -0.96 16 25 C -0.11 -1.30 6.37 -104.87 -0.67 -1.97 16 26 C -0.08 -1.39 9.96 -39.41 -0.39 -1.78 16 27 C -0.22 -4.50 9.12 -39.42 -0.36 -4.86 16 28 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 29 H 0.12 2.49 8.06 -52.49 -0.42 2.06 16 30 H 0.13 2.21 6.43 -52.48 -0.34 1.87 16 31 H 0.41 4.08 8.65 -40.82 -0.35 3.73 16 32 H 0.14 0.87 8.06 -52.49 -0.42 0.44 16 33 H 0.14 0.48 8.06 -52.49 -0.42 0.06 16 34 H 0.14 0.66 8.06 -52.49 -0.42 0.23 16 35 H 0.15 1.50 7.73 -52.48 -0.41 1.10 16 36 H 0.11 1.55 8.06 -52.48 -0.42 1.13 16 37 H 0.13 2.69 5.71 -52.49 -0.30 2.39 16 LS Contribution 333.36 15.07 5.02 5.02 Total: -1.00 -32.05 333.36 -6.89 -38.94 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: -2.92 Total: 6.22 kcal Atomic # 6 Polarization: -12.41 SS G_CDS: -5.31 Total: -17.73 kcal Atomic # 7 Polarization: -37.45 SS G_CDS: 1.10 Total: -36.35 kcal Atomic # 8 Polarization: -11.30 SS G_CDS: 0.25 Total: -11.06 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -5.02 Total: 14.95 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -32.05 -6.89 -38.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001623869104.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.578 kcal (2) G-P(sol) polarization free energy of solvation -32.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.942 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds