Wall clock time and date at job start Tue Mar 31 2020 14:35:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30826 * 1 3 3 Si 1.86795 * 120.00271 * 2 1 4 4 H 1.48509 * 109.47134 * 275.30332 * 3 2 1 5 5 H 1.48496 * 109.47366 * 35.30239 * 3 2 1 6 6 H 1.48494 * 109.47366 * 155.30702 * 3 2 1 7 7 C 1.39931 * 119.99873 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00245 * 346.80049 * 7 2 1 9 9 C 1.41409 * 119.99959 * 166.80104 * 7 2 1 10 10 C 1.40773 * 120.20948 * 331.35330 * 9 7 2 11 11 C 1.37647 * 119.89092 * 180.02562 * 10 9 7 12 12 C 1.38532 * 120.32226 * 359.73112 * 11 10 9 13 13 C 1.39266 * 120.42434 * 0.54885 * 12 11 10 14 14 N 1.39857 * 119.94684 * 179.72294 * 13 12 11 15 15 C 1.34779 * 120.00022 * 326.46800 * 14 13 12 16 16 O 1.21594 * 120.00183 * 355.09945 * 15 14 13 17 17 C 1.47564 * 120.00109 * 175.09914 * 15 14 13 18 18 C 1.39576 * 120.21481 * 359.97438 * 17 15 14 19 19 C 1.38176 * 120.28787 * 179.97438 * 18 17 15 20 20 C 1.38037 * 120.59566 * 0.06493 * 19 18 17 21 21 C 1.39481 * 120.06507 * 359.91496 * 20 19 18 22 22 N 1.36219 * 133.65496 * 180.02562 * 21 20 19 23 23 C 1.30600 * 108.67961 * 180.02562 * 22 21 20 24 24 O 1.35196 * 124.94202 * 180.02562 * 23 22 21 25 25 O 1.34418 * 110.11046 * 359.97438 * 23 22 21 26 26 C 1.35007 * 108.21421 * 0.02562 * 25 23 22 27 27 C 1.38295 * 120.10363 * 359.45323 * 13 12 11 28 28 H 0.96999 * 119.99907 * 359.97438 * 1 2 3 29 29 H 1.07997 * 120.05791 * 0.02562 * 10 9 7 30 30 H 1.08004 * 119.83783 * 180.02562 * 11 10 9 31 31 H 1.07998 * 119.78514 * 180.29726 * 12 11 10 32 32 H 0.97004 * 120.00221 * 146.47444 * 14 13 12 33 33 H 1.08001 * 119.86169 * 0.02562 * 18 17 15 34 34 H 1.07999 * 119.70817 * 180.02562 * 19 18 17 35 35 H 1.07997 * 119.96581 * 179.97438 * 20 19 18 36 36 H 0.96691 * 113.99938 * 359.97438 * 24 23 22 37 37 H 1.07993 * 120.16476 * 180.25053 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6176 0.0000 4 1 2.3778 2.1111 -1.3942 5 1 1.5004 2.6177 0.8091 6 1 3.5914 1.4103 0.5849 7 6 2.0079 -1.2119 -0.0005 8 1 1.4893 -2.1349 0.2126 9 6 3.3940 -1.2279 -0.2802 10 6 3.9607 -0.2417 -1.1095 11 6 5.3106 -0.2639 -1.3778 12 6 6.1162 -1.2493 -0.8310 13 6 5.5686 -2.2349 -0.0135 14 7 6.3902 -3.2284 0.5285 15 6 7.4508 -3.6807 -0.1694 16 8 7.6424 -3.2907 -1.3051 17 6 8.3794 -4.6493 0.4446 18 6 8.1641 -5.0995 1.7481 19 6 9.0324 -6.0069 2.3243 20 6 10.1231 -6.4790 1.6222 21 6 10.3569 -6.0426 0.3182 22 7 11.3184 -6.3167 -0.6070 23 6 11.0674 -5.6279 -1.6878 24 8 11.8161 -5.6529 -2.8133 25 8 9.9557 -4.8914 -1.5187 26 6 9.4812 -5.1227 -0.2762 27 6 4.2145 -2.2294 0.2677 28 1 -0.4850 0.8400 0.0004 29 1 3.3375 0.5311 -1.5346 30 1 5.7446 0.4935 -2.0138 31 1 7.1751 -1.2557 -1.0434 32 1 6.1968 -3.5920 1.4068 33 1 7.3147 -4.7379 2.3085 34 1 8.8567 -6.3493 3.3334 35 1 10.7955 -7.1877 2.0826 36 1 12.5829 -6.2396 -2.7625 37 1 3.7895 -2.9908 0.9048 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001640868116.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:35:02 Heat of formation + Delta-G solvation = 3.068954 kcal Electronic energy + Delta-G solvation = -25543.773700 eV Core-core repulsion = 21639.436350 eV Total energy + Delta-G solvation = -3904.337351 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.094 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.62573 -40.15823 -38.74874 -37.97109 -37.36810 -34.81996 -34.60423 -33.27834 -31.39759 -30.30484 -29.75846 -28.61619 -25.18373 -24.74238 -23.47573 -23.30249 -21.54182 -21.18550 -19.97433 -19.33812 -18.64357 -18.23156 -17.51099 -17.38520 -16.67791 -16.04080 -15.52944 -15.35048 -15.01333 -14.77046 -14.38790 -14.18637 -13.97567 -13.81112 -13.55880 -12.82643 -12.71725 -12.67073 -12.51791 -12.22933 -12.08083 -11.69937 -11.38726 -11.10014 -11.06350 -10.76232 -10.64397 -10.22058 -9.75783 -9.63084 -9.40606 -9.17136 -9.00584 -8.67041 -7.71236 -7.18555 -6.93677 -4.52381 0.11999 0.77462 1.28202 1.86668 2.40964 2.61392 2.95067 3.11996 3.14606 3.21537 3.24225 3.32617 3.54713 3.98250 4.03928 4.31923 4.49903 4.52463 4.58409 4.86060 4.91960 5.18669 5.39179 5.44809 5.57811 5.78965 5.87549 6.00124 6.06414 6.30464 6.33277 6.47359 6.51853 6.69263 6.74446 7.10547 7.24814 7.26890 7.43189 7.62938 7.81842 7.83339 8.06291 8.31357 8.41325 8.61058 8.78850 10.08816 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.025082 B = 0.002763 C = 0.002572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.080985 B =10133.297643 C =10882.299234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.813 5.813 2 C 0.082 3.918 3 Si 0.914 3.086 4 H -0.272 1.272 5 H -0.294 1.294 6 H -0.240 1.240 7 C -0.445 4.445 8 H 0.090 0.910 9 C 0.105 3.895 10 C -0.240 4.240 11 C -0.067 4.067 12 C -0.230 4.230 13 C 0.166 3.834 14 N -0.659 5.659 15 C 0.546 3.454 16 O -0.504 6.504 17 C -0.089 4.089 18 C -0.068 4.068 19 C -0.115 4.115 20 C -0.048 4.048 21 C 0.042 3.958 22 N -0.527 5.527 23 C 0.451 3.549 24 O -0.411 6.411 25 O -0.176 6.176 26 C 0.056 3.944 27 C -0.230 4.230 28 H 0.285 0.715 29 H 0.099 0.901 30 H 0.098 0.902 31 H 0.107 0.893 32 H 0.402 0.598 33 H 0.148 0.852 34 H 0.147 0.853 35 H 0.142 0.858 36 H 0.440 0.560 37 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.504 -11.567 5.001 23.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.438 5.438 2 C -0.136 4.136 3 Si 0.742 3.258 4 H -0.198 1.198 5 H -0.222 1.222 6 H -0.163 1.163 7 C -0.474 4.474 8 H 0.108 0.892 9 C 0.102 3.898 10 C -0.259 4.259 11 C -0.086 4.086 12 C -0.251 4.251 13 C 0.074 3.926 14 N -0.304 5.304 15 C 0.333 3.667 16 O -0.379 6.379 17 C -0.093 4.093 18 C -0.087 4.087 19 C -0.134 4.134 20 C -0.067 4.067 21 C -0.069 4.069 22 N -0.278 5.278 23 C 0.202 3.798 24 O -0.212 6.212 25 O -0.068 6.068 26 C 0.005 3.995 27 C -0.251 4.251 28 H 0.096 0.904 29 H 0.117 0.883 30 H 0.116 0.884 31 H 0.125 0.875 32 H 0.238 0.762 33 H 0.165 0.835 34 H 0.165 0.835 35 H 0.160 0.840 36 H 0.300 0.700 37 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 19.516 -11.158 3.888 22.814 hybrid contribution 0.056 0.633 0.111 0.645 sum 19.572 -10.525 3.999 22.580 Atomic orbital electron populations 1.69657 1.08011 1.30213 1.35883 1.26160 0.94824 1.01739 0.90893 0.86287 0.81241 0.79545 0.78714 1.19845 1.22228 1.16343 1.19454 0.91346 0.95638 1.40973 0.89162 1.17483 0.93077 0.90356 0.88919 1.21012 0.95009 1.03808 1.06119 1.20475 0.93573 0.96785 0.97753 1.20346 0.99077 0.98072 1.07562 1.17466 0.89346 0.88118 0.97653 1.43339 1.27324 1.39074 1.20623 1.18025 0.81346 0.81454 0.85878 1.90869 1.72779 1.57223 1.17002 1.18929 0.94480 1.01639 0.94285 1.21292 0.99499 0.95886 0.91998 1.21009 0.94084 0.97548 1.00807 1.20432 0.97478 0.98850 0.89988 1.19462 0.92620 0.98699 0.96128 1.71231 1.28096 1.28093 1.00405 1.22359 0.83964 0.86581 0.86878 1.84718 1.41329 1.67355 1.27783 1.84564 1.34697 1.56259 1.31285 1.19739 0.97510 0.99858 0.82401 1.20677 0.90188 1.05135 1.09124 0.90449 0.88308 0.88381 0.87454 0.76200 0.83469 0.83538 0.83992 0.70046 0.87724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.65 13.93 55.55 0.77 -20.87 16 2 C 0.08 2.15 5.47 -17.35 -0.09 2.05 16 3 Si 0.91 20.83 24.36 -169.99 -4.14 16.69 16 4 H -0.27 -6.07 6.77 56.52 0.38 -5.69 16 5 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 6 H -0.24 -5.55 6.48 56.52 0.37 -5.18 16 7 C -0.45 -11.93 9.61 -37.74 -0.36 -12.29 16 8 H 0.09 2.52 8.06 -52.49 -0.42 2.09 16 9 C 0.11 2.66 5.19 -106.85 -0.55 2.10 16 10 C -0.24 -5.89 6.91 -38.84 -0.27 -6.16 16 11 C -0.07 -1.53 10.02 -39.69 -0.40 -1.93 16 12 C -0.23 -5.19 8.66 -39.09 -0.34 -5.52 16 13 C 0.17 3.53 6.26 -83.79 -0.52 3.01 16 14 N -0.66 -11.00 5.28 -10.84 -0.06 -11.06 16 15 C 0.55 9.53 7.50 -12.46 -0.09 9.43 16 16 O -0.50 -10.92 13.80 -4.63 -0.06 -10.98 16 17 C -0.09 -1.21 5.88 -104.97 -0.62 -1.83 16 18 C -0.07 -0.62 9.53 -39.11 -0.37 -0.99 16 19 C -0.12 -0.82 10.00 -39.68 -0.40 -1.21 16 20 C -0.05 -0.41 10.09 -39.19 -0.40 -0.81 16 21 C 0.04 0.51 7.23 -84.71 -0.61 -0.11 16 22 N -0.53 -6.17 11.38 -12.80 -0.15 -6.32 16 23 C 0.45 5.42 9.54 52.24 0.50 5.92 16 24 O -0.41 -3.36 13.62 -40.56 -0.55 -3.91 16 25 O -0.18 -2.76 10.16 -24.67 -0.25 -3.01 16 26 C 0.06 0.81 6.98 -38.21 -0.27 0.54 16 27 C -0.23 -5.20 9.70 -38.68 -0.38 -5.58 16 28 H 0.29 6.88 8.30 -40.82 -0.34 6.55 16 29 H 0.10 2.40 4.19 -52.49 -0.22 2.18 16 30 H 0.10 1.98 8.06 -52.48 -0.42 1.56 16 31 H 0.11 2.41 6.40 -52.49 -0.34 2.08 16 32 H 0.40 4.98 6.86 -40.82 -0.28 4.70 16 33 H 0.15 0.94 6.40 -52.49 -0.34 0.60 16 34 H 0.15 0.53 8.06 -52.49 -0.42 0.10 16 35 H 0.14 0.85 8.06 -52.49 -0.42 0.43 16 36 H 0.44 0.86 9.06 45.56 0.41 1.27 16 37 H 0.10 2.16 8.06 -52.49 -0.42 1.74 16 LS Contribution 322.94 15.07 4.87 4.87 Total: -1.00 -34.79 322.94 -6.81 -41.60 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: -2.06 Total: 6.36 kcal Atomic # 6 Polarization: -8.19 SS G_CDS: -5.17 Total: -13.36 kcal Atomic # 7 Polarization: -38.82 SS G_CDS: 0.57 Total: -38.25 kcal Atomic # 8 Polarization: -17.03 SS G_CDS: -0.87 Total: -17.90 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -4.14 Total: 16.69 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -34.79 -6.81 -41.60 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001640868116.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.667 kcal (2) G-P(sol) polarization free energy of solvation -34.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.598 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds