Wall clock time and date at job start Tue Mar 31 2020 13:39:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 C 1.52998 * 109.47365 * 114.42025 * 3 2 1 5 5 N 1.46503 * 109.47195 * 179.97438 * 4 3 2 6 6 C 1.46499 * 119.99687 * 269.99762 * 5 4 3 7 7 C 1.50703 * 109.46946 * 270.00004 * 6 5 4 8 8 H 1.07996 * 120.00402 * 0.02562 * 7 6 5 9 9 C 1.37880 * 119.99948 * 179.97438 * 7 6 5 10 10 N 1.31519 * 119.99988 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 120.00279 * 179.97438 * 9 7 6 12 12 H 1.48505 * 109.46823 * 90.00005 * 11 9 7 13 13 H 1.48491 * 109.47371 * 210.00081 * 11 9 7 14 14 H 1.48499 * 109.47013 * 330.00506 * 11 9 7 15 15 C 1.34776 * 120.00096 * 90.00191 * 5 4 3 16 16 O 1.21279 * 120.00096 * 179.97438 * 15 5 4 17 17 C 1.50703 * 119.99978 * 359.97438 * 15 5 4 18 18 S 1.81399 * 109.47147 * 180.02562 * 17 15 5 19 19 C 1.81394 * 102.99894 * 179.97438 * 18 17 15 20 20 C 1.50700 * 109.46854 * 179.97438 * 19 18 17 21 21 C 1.33390 * 125.20302 * 90.00409 * 20 19 18 22 22 C 1.38422 * 114.92003 * 179.97438 * 21 20 19 23 23 C 1.33389 * 114.92225 * 359.97438 * 22 21 20 24 24 S 1.75882 * 125.20316 * 269.69162 * 20 19 18 25 25 H 1.09003 * 109.47442 * 354.41559 * 3 2 1 26 26 H 1.09002 * 109.47252 * 234.41814 * 3 2 1 27 27 H 1.09003 * 109.47221 * 59.99399 * 4 3 2 28 28 H 1.09002 * 109.46764 * 300.00089 * 4 3 2 29 29 H 1.08997 * 109.47388 * 29.99796 * 6 5 4 30 30 H 1.09000 * 109.47158 * 150.00509 * 6 5 4 31 31 H 0.96994 * 120.00572 * 180.02562 * 10 9 7 32 32 H 1.09001 * 109.46980 * 60.00266 * 17 15 5 33 33 H 1.09004 * 109.47113 * 300.00247 * 17 15 5 34 34 H 1.09002 * 109.47501 * 299.99574 * 19 18 17 35 35 H 1.08998 * 109.47135 * 60.00434 * 19 18 17 36 36 H 1.07998 * 122.53920 * 359.94900 * 21 20 19 37 37 H 1.07998 * 122.54265 * 180.02562 * 22 21 20 38 38 H 1.08004 * 125.20242 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1178 0.5972 -1.3134 5 7 4.5828 0.5984 -1.3131 6 6 5.3142 1.7544 -0.7887 7 6 5.5647 2.7379 -1.9027 8 1 5.2139 2.5236 -2.9013 9 6 6.2410 3.9119 -1.6467 10 7 6.6678 4.1732 -0.4305 11 14 6.5522 5.1307 -3.0277 12 1 5.4212 6.0899 -3.1055 13 1 7.8114 5.8709 -2.7602 14 1 6.6713 4.4002 -4.3151 15 6 5.2577 -0.4638 -1.7954 16 8 6.4705 -0.4626 -1.7956 17 6 4.5053 -1.6531 -2.3345 18 16 5.6852 -2.9079 -2.9035 19 6 4.6082 -4.2376 -3.5053 20 6 5.4532 -5.3738 -4.0212 21 6 5.8853 -6.4036 -3.2917 22 6 6.6483 -7.3287 -3.9831 23 6 6.8355 -7.0504 -5.2742 24 16 6.0141 -5.5488 -5.6790 25 1 2.9719 -1.0220 0.1000 26 1 2.9711 0.5988 0.8358 27 1 2.7539 1.6199 -1.4134 28 1 2.7547 -0.0009 -2.1492 29 1 4.7246 2.2333 -0.0070 30 1 6.2669 1.4242 -0.3745 31 1 7.1432 4.9992 -0.2503 32 1 3.8782 -1.3386 -3.1687 33 1 3.8791 -2.0740 -1.5477 34 1 3.9794 -4.5935 -2.6891 35 1 3.9786 -3.8589 -4.3105 36 1 5.6574 -6.5075 -2.2412 37 1 7.0602 -8.2095 -3.5131 38 1 7.4015 -7.6566 -5.9660 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001645533419.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:00 Heat of formation + Delta-G solvation = 26.556362 kcal Electronic energy + Delta-G solvation = -21301.674701 eV Core-core repulsion = 17976.552663 eV Total energy + Delta-G solvation = -3325.122038 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 324.071 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.29119 -38.08294 -36.92504 -35.32653 -32.97595 -32.26359 -30.92645 -30.14664 -27.12411 -26.72988 -24.10424 -23.40516 -22.78450 -19.53367 -18.81990 -17.77836 -17.42231 -16.72645 -16.50479 -16.22683 -15.67633 -15.37810 -15.10303 -14.77786 -14.35036 -14.13338 -13.86791 -13.73826 -13.24443 -13.10138 -12.75356 -12.71441 -12.50695 -12.45667 -12.24725 -12.07749 -11.92105 -11.75286 -11.31089 -11.03866 -10.95379 -10.91881 -10.65696 -10.21891 -10.01969 -9.75215 -9.20806 -8.81347 -8.67147 -8.49739 -7.95380 -7.59231 -6.11518 -4.16387 0.55437 1.37545 1.62784 1.79028 2.44738 2.66271 2.69963 2.74802 3.15042 3.27466 3.35136 3.39140 3.58014 4.10068 4.37954 4.40071 4.73162 4.83583 4.85361 4.94259 4.96243 5.11548 5.13152 5.23733 5.26412 5.35277 5.36631 5.40534 5.74992 5.86495 5.99233 6.03957 6.23048 6.83528 7.28795 7.35640 7.50928 7.84035 8.11535 8.14200 8.73931 8.90436 9.49354 10.96685 Molecular weight = 324.07amu Principal moments of inertia in cm(-1) A = 0.011356 B = 0.003056 C = 0.002561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2465.130057 B = 9161.263474 C =10929.451254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C 0.216 3.784 3 C -0.051 4.051 4 C 0.116 3.884 5 N -0.592 5.592 6 C 0.246 3.754 7 C -0.530 4.530 8 H 0.058 0.942 9 C 0.063 3.937 10 N -0.893 5.893 11 Si 0.897 3.103 12 H -0.280 1.280 13 H -0.285 1.285 14 H -0.273 1.273 15 C 0.524 3.476 16 O -0.510 6.510 17 C -0.134 4.134 18 S -0.161 6.161 19 C -0.042 4.042 20 C -0.161 4.161 21 C -0.122 4.122 22 C -0.135 4.135 23 C -0.214 4.214 24 S 0.117 5.883 25 H 0.106 0.894 26 H 0.119 0.881 27 H 0.097 0.903 28 H 0.074 0.926 29 H 0.037 0.963 30 H 0.048 0.952 31 H 0.264 0.736 32 H 0.106 0.894 33 H 0.104 0.896 34 H 0.098 0.902 35 H 0.090 0.910 36 H 0.142 0.858 37 H 0.141 0.859 38 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.358 -20.456 -5.233 21.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.121 5.121 2 C -0.102 4.102 3 C -0.092 4.092 4 C -0.010 4.010 5 N -0.325 5.325 6 C 0.127 3.873 7 C -0.569 4.569 8 H 0.077 0.923 9 C -0.139 4.139 10 N -0.532 5.532 11 Si 0.725 3.275 12 H -0.207 1.207 13 H -0.211 1.211 14 H -0.198 1.198 15 C 0.308 3.692 16 O -0.385 6.385 17 C -0.285 4.285 18 S 0.067 5.933 19 C -0.192 4.192 20 C -0.279 4.279 21 C -0.156 4.156 22 C -0.166 4.166 23 C -0.351 4.351 24 S 0.381 5.619 25 H 0.124 0.876 26 H 0.137 0.863 27 H 0.115 0.885 28 H 0.093 0.907 29 H 0.055 0.945 30 H 0.066 0.934 31 H 0.074 0.926 32 H 0.124 0.876 33 H 0.122 0.878 34 H 0.116 0.884 35 H 0.109 0.891 36 H 0.160 0.840 37 H 0.158 0.842 38 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -5.346 -19.358 -6.422 21.085 hybrid contribution -0.646 -0.082 0.579 0.871 sum -5.992 -19.440 -5.844 21.165 Atomic orbital electron populations 1.81217 1.13025 1.09161 1.08728 1.29092 0.95084 0.92898 0.93107 1.19904 0.81372 1.04966 1.03000 1.21334 0.82146 1.03282 0.94252 1.48151 1.04853 1.18275 1.61207 1.19396 0.92668 0.80735 0.94457 1.21402 1.36980 1.02901 0.95640 0.92327 1.24913 0.95198 0.98063 0.95749 1.69913 1.38227 1.25476 1.19564 0.86506 0.77727 0.80932 0.82354 1.20654 1.21057 1.19810 1.19377 0.87845 0.82800 0.79155 1.90750 1.13210 1.80062 1.54446 1.23748 1.01879 0.98139 1.04779 1.87964 1.11575 1.13027 1.80762 1.21886 0.98724 0.95040 1.03523 1.23691 1.06985 1.00018 0.97227 1.20153 0.99908 0.94184 1.01333 1.20150 1.01333 1.01353 0.93715 1.25683 1.07737 1.01261 1.00371 1.84395 1.48575 1.20185 1.08768 0.87639 0.86308 0.88493 0.90749 0.94516 0.93402 0.92610 0.87590 0.87767 0.88354 0.89141 0.83992 0.84176 0.81845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -6.26 18.54 42.15 0.78 -5.48 16 2 C 0.22 2.46 15.43 -20.76 -0.32 2.14 16 3 C -0.05 -0.49 6.03 -29.52 -0.18 -0.67 16 4 C 0.12 1.46 5.17 -4.04 -0.02 1.44 16 5 N -0.59 -10.51 2.46 -175.06 -0.43 -10.94 16 6 C 0.25 5.72 5.16 -5.19 -0.03 5.69 16 7 C -0.53 -14.02 9.39 -34.44 -0.32 -14.34 16 8 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 9 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 10 N -0.89 -25.33 13.29 55.43 0.74 -24.60 16 11 Si 0.90 21.16 29.54 -169.99 -5.02 16.14 16 12 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 13 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 14 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 15 C 0.52 9.54 7.69 -10.98 -0.08 9.45 16 16 O -0.51 -11.93 15.44 5.56 0.09 -11.85 16 17 C -0.13 -1.70 4.98 36.01 0.18 -1.52 16 18 S -0.16 -2.26 20.86 -107.50 -2.24 -4.50 16 19 C -0.04 -0.41 6.43 36.01 0.23 -0.18 16 20 C -0.16 -1.65 5.77 -36.00 -0.21 -1.86 16 21 C -0.12 -1.16 10.05 -41.21 -0.41 -1.57 16 22 C -0.13 -1.15 10.18 -41.21 -0.42 -1.57 16 23 C -0.21 -1.81 11.23 29.04 0.33 -1.48 16 24 S 0.12 1.15 23.33 -107.50 -2.51 -1.36 16 25 H 0.11 0.81 7.22 -51.93 -0.37 0.43 16 26 H 0.12 1.16 8.14 -51.93 -0.42 0.73 16 27 H 0.10 1.31 8.07 -51.93 -0.42 0.89 16 28 H 0.07 0.75 6.44 -51.93 -0.33 0.42 16 29 H 0.04 0.84 8.07 -51.93 -0.42 0.42 16 30 H 0.05 1.28 7.42 -51.93 -0.39 0.90 16 31 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 32 H 0.11 1.14 7.40 -51.92 -0.38 0.76 16 33 H 0.10 0.97 7.18 -51.92 -0.37 0.60 16 34 H 0.10 0.77 8.14 -51.92 -0.42 0.35 16 35 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.14 1.14 8.06 -52.49 -0.42 0.72 16 37 H 0.14 0.89 8.06 -52.49 -0.42 0.46 16 38 H 0.16 0.99 8.06 -52.48 -0.42 0.57 16 LS Contribution 364.26 15.07 5.49 5.49 Total: -1.00 -33.59 364.26 -9.24 -42.82 By element: Atomic # 1 Polarization: 1.90 SS G_CDS: -4.77 Total: -2.87 kcal Atomic # 6 Polarization: -1.49 SS G_CDS: -1.36 Total: -2.84 kcal Atomic # 7 Polarization: -42.11 SS G_CDS: 1.09 Total: -41.02 kcal Atomic # 8 Polarization: -11.93 SS G_CDS: 0.09 Total: -11.85 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Atomic # 16 Polarization: -1.11 SS G_CDS: -4.75 Total: -5.86 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.59 -9.24 -42.82 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645533419.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.380 kcal (2) G-P(sol) polarization free energy of solvation -33.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.823 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds