Wall clock time and date at job start Tue Mar 31 2020 13:38:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 C 1.52998 * 109.47365 * 114.42025 * 3 2 1 5 5 N 1.46503 * 109.47195 * 179.97438 * 4 3 2 6 6 C 1.46499 * 119.99687 * 269.99762 * 5 4 3 7 7 C 1.50703 * 109.46946 * 270.00004 * 6 5 4 8 8 H 1.07996 * 120.00402 * 0.02562 * 7 6 5 9 9 C 1.37880 * 119.99948 * 179.97438 * 7 6 5 10 10 N 1.31519 * 119.99988 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 120.00279 * 179.97438 * 9 7 6 12 12 H 1.48505 * 109.46823 * 90.00005 * 11 9 7 13 13 H 1.48491 * 109.47371 * 210.00081 * 11 9 7 14 14 H 1.48499 * 109.47013 * 330.00506 * 11 9 7 15 15 C 1.34776 * 120.00096 * 90.00191 * 5 4 3 16 16 O 1.21279 * 120.00096 * 179.97438 * 15 5 4 17 17 C 1.50703 * 119.99978 * 359.97438 * 15 5 4 18 18 S 1.81399 * 109.47147 * 180.02562 * 17 15 5 19 19 C 1.81394 * 102.99894 * 179.97438 * 18 17 15 20 20 C 1.50700 * 109.46854 * 179.97438 * 19 18 17 21 21 C 1.33390 * 125.20302 * 90.00409 * 20 19 18 22 22 C 1.38422 * 114.92003 * 179.97438 * 21 20 19 23 23 C 1.33389 * 114.92225 * 359.97438 * 22 21 20 24 24 S 1.75882 * 125.20316 * 269.69162 * 20 19 18 25 25 H 1.09003 * 109.47442 * 354.41559 * 3 2 1 26 26 H 1.09002 * 109.47252 * 234.41814 * 3 2 1 27 27 H 1.09003 * 109.47221 * 59.99399 * 4 3 2 28 28 H 1.09002 * 109.46764 * 300.00089 * 4 3 2 29 29 H 1.08997 * 109.47388 * 29.99796 * 6 5 4 30 30 H 1.09000 * 109.47158 * 150.00509 * 6 5 4 31 31 H 0.96994 * 120.00572 * 180.02562 * 10 9 7 32 32 H 1.09001 * 109.46980 * 60.00266 * 17 15 5 33 33 H 1.09004 * 109.47113 * 300.00247 * 17 15 5 34 34 H 1.09002 * 109.47501 * 299.99574 * 19 18 17 35 35 H 1.08998 * 109.47135 * 60.00434 * 19 18 17 36 36 H 1.07998 * 122.53920 * 359.94900 * 21 20 19 37 37 H 1.07998 * 122.54265 * 180.02562 * 22 21 20 38 38 H 1.08004 * 125.20242 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1178 0.5972 -1.3134 5 7 4.5828 0.5984 -1.3131 6 6 5.3142 1.7544 -0.7887 7 6 5.5647 2.7379 -1.9027 8 1 5.2139 2.5236 -2.9013 9 6 6.2410 3.9119 -1.6467 10 7 6.6678 4.1732 -0.4305 11 14 6.5522 5.1307 -3.0277 12 1 5.4212 6.0899 -3.1055 13 1 7.8114 5.8709 -2.7602 14 1 6.6713 4.4002 -4.3151 15 6 5.2577 -0.4638 -1.7954 16 8 6.4705 -0.4626 -1.7956 17 6 4.5053 -1.6531 -2.3345 18 16 5.6852 -2.9079 -2.9035 19 6 4.6082 -4.2376 -3.5053 20 6 5.4532 -5.3738 -4.0212 21 6 5.8853 -6.4036 -3.2917 22 6 6.6483 -7.3287 -3.9831 23 6 6.8355 -7.0504 -5.2742 24 16 6.0141 -5.5488 -5.6790 25 1 2.9719 -1.0220 0.1000 26 1 2.9711 0.5988 0.8358 27 1 2.7539 1.6199 -1.4134 28 1 2.7547 -0.0009 -2.1492 29 1 4.7246 2.2333 -0.0070 30 1 6.2669 1.4242 -0.3745 31 1 7.1432 4.9992 -0.2503 32 1 3.8782 -1.3386 -3.1687 33 1 3.8791 -2.0740 -1.5477 34 1 3.9794 -4.5935 -2.6891 35 1 3.9786 -3.8589 -4.3105 36 1 5.6574 -6.5075 -2.2412 37 1 7.0602 -8.2095 -3.5131 38 1 7.4015 -7.6566 -5.9660 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001645533419.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:38:59 Heat of formation + Delta-G solvation = 7.337182 kcal Electronic energy + Delta-G solvation = -21302.508107 eV Core-core repulsion = 17976.552663 eV Total energy + Delta-G solvation = -3325.955444 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 324.071 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.71539 -38.74545 -37.99709 -36.70932 -34.89507 -32.96021 -32.22146 -31.38005 -28.67816 -27.61058 -25.32888 -24.65599 -23.97097 -20.33478 -20.04622 -18.86907 -18.40969 -18.22393 -17.98747 -17.30739 -16.76289 -16.43061 -16.29384 -16.04569 -15.68936 -15.06247 -14.83107 -14.75573 -14.41472 -14.32479 -13.80335 -13.63264 -13.57232 -13.54220 -13.39084 -13.25474 -13.02297 -12.88023 -12.72635 -12.63749 -12.49849 -12.17628 -11.87631 -11.67932 -11.64443 -10.94451 -10.70842 -10.58115 -9.52762 -9.52232 -9.38742 -8.63028 -8.18270 -6.30288 -0.20530 0.66472 0.78410 1.11147 1.39508 1.42567 1.51594 1.59482 1.66684 1.84114 1.84873 1.99390 2.29181 2.45046 3.08963 3.14743 3.64421 3.74934 4.02147 4.06451 4.08233 4.16528 4.27451 4.33242 4.48601 4.57802 4.71736 4.75713 4.83760 5.05253 5.09810 5.20970 5.33627 5.37795 5.58547 5.59350 5.85822 6.12214 6.60653 6.67468 6.80073 7.31620 7.46230 8.88529 Molecular weight = 324.07amu Principal moments of inertia in cm(-1) A = 0.011356 B = 0.003056 C = 0.002561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2465.130057 B = 9161.263474 C =10929.451254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.489 5.489 2 C 0.246 3.754 3 C -0.038 4.038 4 C 0.111 3.889 5 N -0.592 5.592 6 C 0.261 3.739 7 C -0.541 4.541 8 H 0.053 0.947 9 C 0.012 3.988 10 N -0.926 5.926 11 Si 0.957 3.043 12 H -0.266 1.266 13 H -0.285 1.285 14 H -0.275 1.275 15 C 0.516 3.484 16 O -0.573 6.573 17 C -0.111 4.111 18 S -0.242 6.242 19 C -0.019 4.019 20 C -0.181 4.181 21 C -0.123 4.123 22 C -0.145 4.145 23 C -0.209 4.209 24 S 0.086 5.914 25 H 0.138 0.862 26 H 0.120 0.880 27 H 0.086 0.914 28 H 0.109 0.891 29 H 0.038 0.962 30 H 0.004 0.996 31 H 0.265 0.735 32 H 0.132 0.868 33 H 0.148 0.852 34 H 0.124 0.876 35 H 0.102 0.898 36 H 0.155 0.845 37 H 0.163 0.837 38 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.996 -22.114 -5.908 23.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.167 5.167 2 C -0.071 4.071 3 C -0.079 4.079 4 C -0.013 4.013 5 N -0.323 5.323 6 C 0.140 3.860 7 C -0.579 4.579 8 H 0.072 0.928 9 C -0.188 4.188 10 N -0.565 5.565 11 Si 0.782 3.218 12 H -0.191 1.191 13 H -0.211 1.211 14 H -0.200 1.200 15 C 0.304 3.696 16 O -0.452 6.452 17 C -0.262 4.262 18 S -0.014 6.014 19 C -0.168 4.168 20 C -0.299 4.299 21 C -0.157 4.157 22 C -0.175 4.175 23 C -0.346 4.346 24 S 0.349 5.651 25 H 0.156 0.844 26 H 0.138 0.862 27 H 0.104 0.896 28 H 0.127 0.873 29 H 0.056 0.944 30 H 0.022 0.978 31 H 0.074 0.926 32 H 0.150 0.850 33 H 0.166 0.834 34 H 0.142 0.858 35 H 0.121 0.879 36 H 0.173 0.827 37 H 0.181 0.819 38 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -7.047 -21.021 -7.102 23.281 hybrid contribution -0.093 0.336 0.781 0.855 sum -7.141 -20.685 -6.321 22.777 Atomic orbital electron populations 1.81266 1.14417 1.10877 1.10129 1.29118 0.94892 0.91375 0.91720 1.19836 0.80104 1.06682 1.01317 1.21582 0.78713 1.03901 0.97133 1.47995 1.06887 1.16761 1.60673 1.18829 0.91549 0.81982 0.93652 1.21750 1.36491 1.03545 0.96147 0.92831 1.25713 0.95204 1.00007 0.97846 1.70017 1.39172 1.26081 1.21276 0.85571 0.77881 0.78928 0.79387 1.19121 1.21067 1.19958 1.20280 0.87467 0.83917 0.77978 1.90725 1.16248 1.81462 1.56768 1.23605 1.00790 0.95107 1.06677 1.88313 1.15473 1.16018 1.81582 1.21869 0.97599 0.92811 1.04492 1.23842 1.08150 1.00651 0.97268 1.20467 0.99225 0.93978 1.02009 1.20466 1.01199 1.02020 0.93796 1.26007 1.07189 1.00489 1.00898 1.84477 1.49462 1.21630 1.09483 0.84417 0.86167 0.89592 0.87302 0.94378 0.97819 0.92561 0.84963 0.83429 0.85828 0.87937 0.82701 0.81948 0.79687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -12.77 18.54 20.01 0.37 -12.40 16 2 C 0.25 4.90 15.43 89.44 1.38 6.28 16 3 C -0.04 -0.62 6.03 28.79 0.17 -0.45 16 4 C 0.11 2.49 5.17 86.38 0.45 2.94 16 5 N -0.59 -20.52 2.46 -826.14 -2.03 -22.55 16 6 C 0.26 12.42 5.16 85.63 0.44 12.86 16 7 C -0.54 -29.02 9.39 25.60 0.24 -28.78 16 8 H 0.05 2.86 7.81 -2.91 -0.02 2.84 16 9 C 0.01 0.64 5.46 84.65 0.46 1.10 16 10 N -0.93 -53.61 13.29 21.45 0.28 -53.33 16 11 Si 0.96 43.70 29.54 68.60 2.03 45.73 16 12 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 13 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 14 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 15 C 0.52 18.44 7.69 87.66 0.67 19.11 16 16 O -0.57 -27.67 15.44 -3.03 -0.05 -27.71 16 17 C -0.11 -2.50 4.98 71.24 0.35 -2.14 16 18 S -0.24 -6.49 20.86 -56.49 -1.18 -7.67 16 19 C -0.02 -0.32 6.43 71.24 0.46 0.14 16 20 C -0.18 -3.39 5.77 24.59 0.14 -3.25 16 21 C -0.12 -2.07 10.05 21.22 0.21 -1.86 16 22 C -0.14 -2.16 10.18 21.22 0.22 -1.94 16 23 C -0.21 -3.17 11.23 66.72 0.75 -2.42 16 24 S 0.09 1.60 23.33 -56.49 -1.32 0.29 16 25 H 0.14 1.44 7.22 -2.39 -0.02 1.42 16 26 H 0.12 2.05 8.14 -2.39 -0.02 2.03 16 27 H 0.09 2.16 8.07 -2.39 -0.02 2.14 16 28 H 0.11 1.73 6.44 -2.39 -0.02 1.71 16 29 H 0.04 1.78 8.07 -2.39 -0.02 1.76 16 30 H 0.00 0.21 7.42 -2.39 -0.02 0.19 16 31 H 0.27 14.58 8.31 -92.71 -0.77 13.81 16 32 H 0.13 2.31 7.40 -2.39 -0.02 2.29 16 33 H 0.15 2.01 7.18 -2.39 -0.02 1.99 16 34 H 0.12 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.16 2.11 8.06 -2.91 -0.02 2.08 16 37 H 0.16 1.61 8.06 -2.91 -0.02 1.59 16 38 H 0.19 1.84 8.06 -2.91 -0.02 1.81 16 Total: -1.00 -77.39 364.26 5.14 -72.25 By element: Atomic # 1 Polarization: 2.73 SS G_CDS: 1.08 Total: 3.81 kcal Atomic # 6 Polarization: -4.36 SS G_CDS: 5.95 Total: 1.59 kcal Atomic # 7 Polarization: -86.91 SS G_CDS: -1.37 Total: -88.28 kcal Atomic # 8 Polarization: -27.67 SS G_CDS: -0.05 Total: -27.71 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Atomic # 16 Polarization: -4.89 SS G_CDS: -2.50 Total: -7.39 kcal Total: -77.39 5.14 -72.25 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645533419.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.590 kcal (2) G-P(sol) polarization free energy of solvation -77.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.253 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds