Wall clock time and date at job start Tue Mar 31 2020 13:54:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 109.47262 * 2 1 4 4 C 1.50694 * 109.47103 * 239.99678 * 2 1 3 5 5 H 1.07996 * 120.00367 * 245.43947 * 4 2 1 6 6 C 1.37880 * 119.99796 * 65.71648 * 4 2 1 7 7 N 1.31514 * 119.99990 * 359.72259 * 6 4 2 8 8 Si 1.86806 * 120.00087 * 179.72491 * 6 4 2 9 9 H 1.48501 * 109.47105 * 89.99780 * 8 6 4 10 10 H 1.48502 * 109.47150 * 209.99652 * 8 6 4 11 11 H 1.48497 * 109.47130 * 329.99952 * 8 6 4 12 12 O 1.45199 * 109.47002 * 119.99692 * 2 1 3 13 13 C 1.34228 * 117.00461 * 274.19315 * 12 2 1 14 14 O 1.20827 * 119.99578 * 354.90779 * 13 12 2 15 15 C 1.50691 * 120.00259 * 174.90985 * 13 12 2 16 16 S 1.81404 * 115.55050 * 313.94753 * 15 13 12 17 17 O 1.42103 * 110.53907 * 48.54374 * 16 15 13 18 18 O 1.42094 * 110.54309 * 185.29309 * 16 15 13 19 19 C 1.76199 * 104.44810 * 296.91881 * 16 15 13 20 20 C 1.38232 * 119.99992 * 274.94423 * 19 16 15 21 21 C 1.38236 * 119.99744 * 179.78922 * 20 19 16 22 22 C 1.38229 * 120.00310 * 0.44137 * 21 20 19 23 23 C 1.38237 * 119.99778 * 359.81741 * 22 21 20 24 24 C 1.38237 * 120.00267 * 359.97134 * 23 22 21 25 25 C 1.53004 * 117.49975 * 168.27964 * 15 13 12 26 26 C 1.53001 * 117.50020 * 99.61926 * 15 13 12 27 27 H 1.08994 * 109.47145 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46553 * 300.00485 * 1 2 3 29 29 H 1.09002 * 109.47079 * 59.99923 * 1 2 3 30 30 H 0.97003 * 119.99660 * 180.02562 * 7 6 4 31 31 H 1.08001 * 119.99864 * 0.02562 * 20 19 16 32 32 H 1.08009 * 119.99786 * 180.27871 * 21 20 19 33 33 H 1.07998 * 120.00546 * 179.83539 * 22 21 20 34 34 H 1.08007 * 120.00109 * 179.97438 * 23 22 21 35 35 H 1.07997 * 120.00156 * 180.02562 * 24 23 22 36 36 H 1.08999 * 117.49706 * 359.97438 * 25 15 13 37 37 H 1.08997 * 117.50084 * 145.02457 * 25 15 13 38 38 H 1.09001 * 117.49932 * 214.98076 * 26 15 13 39 39 H 1.08999 * 117.49722 * 359.97380 * 26 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.5788 -1.6369 -1.1337 6 6 1.7991 -0.1747 -2.4792 7 7 1.1336 0.9535 -2.5970 8 14 2.4284 -1.0514 -4.0041 9 1 1.3952 -2.0002 -4.4914 10 1 2.7224 -0.0529 -5.0632 11 1 3.6678 -1.7979 -3.6698 12 8 2.0140 -0.6844 1.1856 13 6 2.1347 0.0467 2.3048 14 8 1.9342 1.2378 2.2728 15 6 2.5203 -0.6179 3.6011 16 16 1.6324 -2.1517 3.9883 17 8 1.6323 -3.0245 2.8668 18 8 1.9880 -2.6208 5.2816 19 6 -0.0503 -1.6560 4.1533 20 6 -0.5121 -1.1693 5.3619 21 6 -1.8312 -0.7763 5.4900 22 6 -2.6908 -0.8785 4.4123 23 6 -2.2302 -1.3702 3.2052 24 6 -0.9100 -1.7591 3.0757 25 6 2.9089 0.2880 4.7712 26 6 3.9832 -0.5190 4.0379 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3632 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 0.9692 1.3301 -3.4756 31 1 0.1586 -1.0926 6.2049 32 1 -2.1910 -0.3918 6.4331 33 1 -3.7220 -0.5739 4.5132 34 1 -2.9019 -1.4504 2.3632 35 1 -0.5502 -2.1429 2.1325 36 1 2.8861 1.3647 4.6033 37 1 2.6316 -0.0379 5.7737 38 1 4.4121 -1.3754 4.5582 39 1 4.6669 0.0264 3.3874 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001646831927.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:54:17 Heat of formation + Delta-G solvation = -94.957324 kcal Electronic energy + Delta-G solvation = -26241.478482 eV Core-core repulsion = 22436.041593 eV Total energy + Delta-G solvation = -3805.436889 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.091 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.97893 -39.10912 -37.52640 -36.76486 -35.93101 -35.50417 -33.26860 -31.37629 -31.07592 -29.78088 -25.70685 -25.23902 -23.38277 -22.85379 -22.69334 -21.62084 -20.25133 -18.86942 -18.23893 -17.53995 -16.72209 -16.22466 -16.08308 -15.96165 -15.47378 -14.86641 -14.70014 -14.59415 -14.50676 -14.11037 -13.57525 -13.13649 -13.03937 -12.51374 -12.33871 -12.24652 -12.04931 -11.98167 -11.86850 -11.73226 -11.40211 -11.30917 -11.19735 -11.06917 -10.89325 -10.80425 -10.51962 -10.46238 -10.31228 -9.88809 -9.58517 -9.44740 -9.08211 -9.00305 -8.52804 -6.22130 -4.27700 -0.03295 0.79879 1.25822 2.31887 2.93719 3.11466 3.25107 3.25649 3.31054 3.38035 3.42081 3.82803 4.02645 4.30568 4.37998 4.49808 4.77595 4.81793 4.91914 4.95777 5.12638 5.24163 5.26126 5.40104 5.54711 5.61930 5.62864 5.78759 5.87328 6.04207 6.15949 6.30064 6.51350 6.75151 6.77358 6.78522 7.00350 7.51365 7.59624 7.80954 8.05402 8.46615 8.83920 9.37630 10.86695 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.014628 B = 0.004879 C = 0.004299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1913.672290 B = 5737.875714 C = 6511.673627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.216 3.784 3 H 0.051 0.949 4 C -0.519 4.519 5 H 0.073 0.927 6 C 0.063 3.937 7 N -0.891 5.891 8 Si 0.912 3.088 9 H -0.277 1.277 10 H -0.285 1.285 11 H -0.270 1.270 12 O -0.338 6.338 13 C 0.505 3.495 14 O -0.498 6.498 15 C -0.650 4.650 16 S 2.538 3.462 17 O -0.900 6.900 18 O -0.932 6.932 19 C -0.658 4.658 20 C -0.023 4.023 21 C -0.146 4.146 22 C -0.065 4.065 23 C -0.137 4.137 24 C -0.011 4.011 25 C -0.099 4.099 26 C -0.100 4.100 27 H 0.042 0.958 28 H 0.018 0.982 29 H 0.093 0.907 30 H 0.266 0.734 31 H 0.137 0.863 32 H 0.131 0.869 33 H 0.129 0.871 34 H 0.135 0.865 35 H 0.149 0.851 36 H 0.127 0.873 37 H 0.124 0.876 38 H 0.122 0.878 39 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.810 -2.435 16.715 17.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.164 3.836 3 H 0.069 0.931 4 C -0.557 4.557 5 H 0.091 0.909 6 C -0.139 4.139 7 N -0.528 5.528 8 Si 0.739 3.261 9 H -0.203 1.203 10 H -0.210 1.210 11 H -0.195 1.195 12 O -0.254 6.254 13 C 0.345 3.655 14 O -0.387 6.387 15 C -0.738 4.738 16 S 2.715 3.285 17 O -0.897 6.897 18 O -0.930 6.930 19 C -0.745 4.745 20 C -0.042 4.042 21 C -0.164 4.164 22 C -0.083 4.083 23 C -0.156 4.156 24 C -0.030 4.030 25 C -0.137 4.137 26 C -0.138 4.138 27 H 0.061 0.939 28 H 0.037 0.963 29 H 0.111 0.889 30 H 0.076 0.924 31 H 0.155 0.845 32 H 0.149 0.851 33 H 0.147 0.853 34 H 0.153 0.847 35 H 0.167 0.833 36 H 0.145 0.855 37 H 0.142 0.858 38 H 0.141 0.859 39 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -2.598 -2.753 16.561 16.988 hybrid contribution -0.376 0.603 -1.124 1.329 sum -2.974 -2.150 15.437 15.867 Atomic orbital electron populations 1.22195 0.97641 1.00249 1.01176 1.20768 0.91303 0.94125 0.77433 0.93130 1.21001 1.36810 1.09181 0.88690 0.90870 1.24894 0.94992 0.94963 0.99065 1.69935 1.39750 1.18682 1.24461 0.86266 0.79441 0.79097 0.81327 1.20262 1.21022 1.19491 1.86594 1.75474 1.44244 1.19068 1.20781 0.74856 0.85563 0.84312 1.90595 1.46608 1.15849 1.85677 1.31507 1.15003 1.24096 1.03203 1.04263 0.74711 0.74822 0.74734 1.93634 1.85341 1.58262 1.52512 1.93554 1.83501 1.76451 1.39452 1.30433 1.23983 1.18663 1.01457 1.20870 0.96542 0.91775 0.95000 1.21230 0.93820 1.01983 0.99403 1.21497 0.99699 0.94297 0.92847 1.21360 0.96034 1.00003 0.98203 1.21200 0.93261 0.91129 0.97375 1.23061 0.98562 0.99766 0.92278 1.23042 0.86238 1.03538 1.00979 0.93904 0.96312 0.88858 0.92381 0.84496 0.85130 0.85287 0.84745 0.83291 0.85523 0.85838 0.85937 0.85882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.78 9.32 37.16 0.35 -3.43 16 2 C 0.22 5.73 2.44 -27.89 -0.07 5.66 16 3 H 0.05 1.47 7.23 -51.93 -0.38 1.10 16 4 C -0.52 -14.55 8.83 -34.44 -0.30 -14.85 16 5 H 0.07 2.05 7.81 -52.49 -0.41 1.64 16 6 C 0.06 1.73 5.33 -17.82 -0.09 1.63 16 7 N -0.89 -25.09 11.74 55.43 0.65 -24.44 16 8 Si 0.91 21.12 29.54 -169.99 -5.02 16.10 16 9 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 10 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 12 O -0.34 -8.09 9.23 -41.46 -0.38 -8.48 16 13 C 0.51 10.48 7.27 36.00 0.26 10.74 16 14 O -0.50 -11.34 15.59 -18.75 -0.29 -11.64 16 15 C -0.65 -10.11 2.52 -91.77 -0.23 -10.34 16 16 S 2.54 40.18 5.09 -107.50 -0.55 39.63 16 17 O -0.90 -17.41 16.41 -60.28 -0.99 -18.40 16 18 O -0.93 -14.26 17.07 -57.54 -0.98 -15.24 16 19 C -0.66 -9.91 5.61 -39.58 -0.22 -10.13 16 20 C -0.02 -0.28 9.47 -39.58 -0.37 -0.66 16 21 C -0.15 -1.57 10.05 -39.59 -0.40 -1.96 16 22 C -0.07 -0.72 10.05 -39.59 -0.40 -1.11 16 23 C -0.14 -1.80 10.05 -39.58 -0.40 -2.19 16 24 C -0.01 -0.17 9.48 -39.58 -0.38 -0.54 16 25 C -0.10 -1.12 9.70 -26.69 -0.26 -1.38 16 26 C -0.10 -1.17 9.99 -26.69 -0.27 -1.43 16 27 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.09 2.43 6.53 -51.93 -0.34 2.09 16 30 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 31 H 0.14 1.34 7.70 -52.49 -0.40 0.94 16 32 H 0.13 0.98 8.06 -52.48 -0.42 0.56 16 33 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 34 H 0.13 1.49 8.06 -52.48 -0.42 1.07 16 35 H 0.15 2.52 7.45 -52.49 -0.39 2.13 16 36 H 0.13 1.45 7.72 -51.93 -0.40 1.05 16 37 H 0.12 1.02 8.09 -51.93 -0.42 0.60 16 38 H 0.12 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.12 1.39 8.14 -51.93 -0.42 0.97 16 LS Contribution 353.68 15.07 5.33 5.33 Total: -1.00 -34.40 353.68 -9.85 -44.25 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: -4.84 Total: 2.89 kcal Atomic # 6 Polarization: -27.23 SS G_CDS: -2.78 Total: -30.01 kcal Atomic # 7 Polarization: -25.09 SS G_CDS: 0.65 Total: -24.44 kcal Atomic # 8 Polarization: -51.10 SS G_CDS: -2.65 Total: -53.75 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Atomic # 16 Polarization: 40.18 SS G_CDS: -0.55 Total: 39.63 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -34.40 -9.85 -44.25 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646831927.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.709 kcal (2) G-P(sol) polarization free energy of solvation -34.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds