Wall clock time and date at job start Tue Mar 31 2020 13:54:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 109.47262 * 2 1 4 4 C 1.50694 * 109.47103 * 239.99678 * 2 1 3 5 5 H 1.07996 * 120.00367 * 245.43947 * 4 2 1 6 6 C 1.37880 * 119.99796 * 65.71648 * 4 2 1 7 7 N 1.31514 * 119.99990 * 359.72259 * 6 4 2 8 8 Si 1.86806 * 120.00087 * 179.72491 * 6 4 2 9 9 H 1.48501 * 109.47105 * 89.99780 * 8 6 4 10 10 H 1.48502 * 109.47150 * 209.99652 * 8 6 4 11 11 H 1.48497 * 109.47130 * 329.99952 * 8 6 4 12 12 O 1.45199 * 109.47002 * 119.99692 * 2 1 3 13 13 C 1.34228 * 117.00461 * 274.19315 * 12 2 1 14 14 O 1.20827 * 119.99578 * 354.90779 * 13 12 2 15 15 C 1.50691 * 120.00259 * 174.90985 * 13 12 2 16 16 S 1.81404 * 115.55050 * 313.94753 * 15 13 12 17 17 O 1.42103 * 110.53907 * 48.54374 * 16 15 13 18 18 O 1.42094 * 110.54309 * 185.29309 * 16 15 13 19 19 C 1.76199 * 104.44810 * 296.91881 * 16 15 13 20 20 C 1.38232 * 119.99992 * 274.94423 * 19 16 15 21 21 C 1.38236 * 119.99744 * 179.78922 * 20 19 16 22 22 C 1.38229 * 120.00310 * 0.44137 * 21 20 19 23 23 C 1.38237 * 119.99778 * 359.81741 * 22 21 20 24 24 C 1.38237 * 120.00267 * 359.97134 * 23 22 21 25 25 C 1.53004 * 117.49975 * 168.27964 * 15 13 12 26 26 C 1.53001 * 117.50020 * 99.61926 * 15 13 12 27 27 H 1.08994 * 109.47145 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46553 * 300.00485 * 1 2 3 29 29 H 1.09002 * 109.47079 * 59.99923 * 1 2 3 30 30 H 0.97003 * 119.99660 * 180.02562 * 7 6 4 31 31 H 1.08001 * 119.99864 * 0.02562 * 20 19 16 32 32 H 1.08009 * 119.99786 * 180.27871 * 21 20 19 33 33 H 1.07998 * 120.00546 * 179.83539 * 22 21 20 34 34 H 1.08007 * 120.00109 * 179.97438 * 23 22 21 35 35 H 1.07997 * 120.00156 * 180.02562 * 24 23 22 36 36 H 1.08999 * 117.49706 * 359.97438 * 25 15 13 37 37 H 1.08997 * 117.50084 * 145.02457 * 25 15 13 38 38 H 1.09001 * 117.49932 * 214.98076 * 26 15 13 39 39 H 1.08999 * 117.49722 * 359.97380 * 26 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.5788 -1.6369 -1.1337 6 6 1.7991 -0.1747 -2.4792 7 7 1.1336 0.9535 -2.5970 8 14 2.4284 -1.0514 -4.0041 9 1 1.3952 -2.0002 -4.4914 10 1 2.7224 -0.0529 -5.0632 11 1 3.6678 -1.7979 -3.6698 12 8 2.0140 -0.6844 1.1856 13 6 2.1347 0.0467 2.3048 14 8 1.9342 1.2378 2.2728 15 6 2.5203 -0.6179 3.6011 16 16 1.6324 -2.1517 3.9883 17 8 1.6323 -3.0245 2.8668 18 8 1.9880 -2.6208 5.2816 19 6 -0.0503 -1.6560 4.1533 20 6 -0.5121 -1.1693 5.3619 21 6 -1.8312 -0.7763 5.4900 22 6 -2.6908 -0.8785 4.4123 23 6 -2.2302 -1.3702 3.2052 24 6 -0.9100 -1.7591 3.0757 25 6 2.9089 0.2880 4.7712 26 6 3.9832 -0.5190 4.0379 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3632 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 0.9692 1.3301 -3.4756 31 1 0.1586 -1.0926 6.2049 32 1 -2.1910 -0.3918 6.4331 33 1 -3.7220 -0.5739 4.5132 34 1 -2.9019 -1.4504 2.3632 35 1 -0.5502 -2.1429 2.1325 36 1 2.8861 1.3647 4.6033 37 1 2.6316 -0.0379 5.7737 38 1 4.4121 -1.3754 4.5582 39 1 4.6669 0.0264 3.3874 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001646831927.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:54:16 Heat of formation + Delta-G solvation = -116.981731 kcal Electronic energy + Delta-G solvation = -26242.433532 eV Core-core repulsion = 22436.041593 eV Total energy + Delta-G solvation = -3806.391939 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.091 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.63728 -40.05650 -38.82654 -38.14117 -37.23709 -37.11100 -35.35061 -32.33564 -32.05339 -31.81339 -27.53996 -26.94639 -24.40898 -23.79329 -23.63179 -23.32219 -21.91004 -20.19280 -19.60397 -18.77427 -18.65378 -17.90387 -17.45277 -16.98009 -16.82321 -16.50566 -16.42673 -15.72059 -15.53630 -15.33958 -14.81866 -14.54027 -14.41685 -14.05735 -14.02292 -13.39295 -13.31161 -13.30293 -13.25120 -13.21148 -12.96104 -12.86122 -12.70677 -12.51785 -12.40810 -12.23008 -12.19523 -11.92515 -11.69700 -11.56409 -11.44425 -11.09979 -10.63573 -10.41365 -10.04526 -8.33549 -6.48838 -1.22118 -0.19956 0.29641 0.92939 1.38647 1.41573 1.49484 1.58725 1.75795 2.09629 2.34868 2.39614 2.71399 2.87418 2.98569 3.26125 3.51708 3.69106 3.84298 3.93213 4.08782 4.26083 4.36737 4.40852 4.42649 4.47400 4.66935 4.69469 4.70426 4.74307 4.91115 4.94487 5.05382 5.07006 5.25773 5.36404 5.44102 5.51956 5.77780 5.86494 5.98367 6.53007 6.77966 7.21970 8.75622 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.014628 B = 0.004879 C = 0.004299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1913.672290 B = 5737.875714 C = 6511.673627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.218 3.782 3 H 0.015 0.985 4 C -0.549 4.549 5 H 0.064 0.936 6 C 0.021 3.979 7 N -0.916 5.916 8 Si 0.979 3.021 9 H -0.267 1.267 10 H -0.274 1.274 11 H -0.267 1.267 12 O -0.352 6.352 13 C 0.502 3.498 14 O -0.526 6.526 15 C -0.675 4.675 16 S 2.549 3.451 17 O -0.950 6.950 18 O -0.927 6.927 19 C -0.674 4.674 20 C -0.030 4.030 21 C -0.139 4.139 22 C -0.060 4.060 23 C -0.151 4.151 24 C -0.047 4.047 25 C -0.076 4.076 26 C -0.093 4.093 27 H 0.049 0.951 28 H 0.028 0.972 29 H 0.075 0.925 30 H 0.272 0.728 31 H 0.166 0.834 32 H 0.173 0.827 33 H 0.167 0.833 34 H 0.144 0.856 35 H 0.119 0.881 36 H 0.125 0.875 37 H 0.164 0.836 38 H 0.156 0.844 39 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.187 -2.298 19.089 19.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.165 3.835 3 H 0.032 0.968 4 C -0.586 4.586 5 H 0.083 0.917 6 C -0.179 4.179 7 N -0.553 5.553 8 Si 0.802 3.198 9 H -0.192 1.192 10 H -0.199 1.199 11 H -0.191 1.191 12 O -0.268 6.268 13 C 0.345 3.655 14 O -0.416 6.416 15 C -0.763 4.763 16 S 2.729 3.271 17 O -0.947 6.947 18 O -0.924 6.924 19 C -0.764 4.764 20 C -0.049 4.049 21 C -0.157 4.157 22 C -0.078 4.078 23 C -0.170 4.170 24 C -0.067 4.067 25 C -0.113 4.113 26 C -0.131 4.131 27 H 0.068 0.932 28 H 0.047 0.953 29 H 0.094 0.906 30 H 0.081 0.919 31 H 0.184 0.816 32 H 0.191 0.809 33 H 0.184 0.816 34 H 0.162 0.838 35 H 0.137 0.863 36 H 0.143 0.857 37 H 0.182 0.818 38 H 0.174 0.826 39 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -2.957 -2.631 18.953 19.362 hybrid contribution -0.293 0.645 -1.737 1.876 sum -3.250 -1.987 17.215 17.632 Atomic orbital electron populations 1.21971 0.96452 1.00484 1.00659 1.20464 0.92201 0.92192 0.78597 0.96759 1.21237 1.37907 1.09400 0.90079 0.91749 1.25779 0.94702 0.95549 1.01910 1.70036 1.40054 1.19715 1.25530 0.85238 0.79050 0.78203 0.77300 1.19175 1.19902 1.19136 1.86582 1.75985 1.44592 1.19674 1.21587 0.73642 0.85424 0.84887 1.90564 1.47748 1.17023 1.86238 1.31453 1.18184 1.25009 1.01659 1.03676 0.75021 0.74513 0.73916 1.93575 1.86246 1.60573 1.54319 1.93542 1.83802 1.76583 1.38462 1.30267 1.22976 1.20495 1.02663 1.21348 0.98086 0.90912 0.94543 1.21781 0.92888 1.00191 1.00882 1.21975 1.01588 0.92503 0.91720 1.21611 0.95163 1.00231 0.99983 1.21128 0.95013 0.93611 0.96899 1.23450 0.96234 0.99300 0.92322 1.23474 0.84469 1.04769 1.00367 0.93234 0.95332 0.90596 0.91871 0.81629 0.80943 0.81587 0.83777 0.86315 0.85666 0.81815 0.82615 0.85871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.09 9.32 71.98 0.67 -6.42 16 2 C 0.22 12.25 2.44 29.85 0.07 12.32 16 3 H 0.01 0.90 7.23 -2.38 -0.02 0.89 16 4 C -0.55 -32.11 8.83 25.60 0.23 -31.88 16 5 H 0.06 3.78 7.81 -2.91 -0.02 3.75 16 6 C 0.02 1.16 5.33 84.66 0.45 1.61 16 7 N -0.92 -52.88 11.74 21.45 0.25 -52.63 16 8 Si 0.98 43.75 29.54 68.60 2.03 45.78 16 9 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 10 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 11 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 12 O -0.35 -17.84 9.23 -49.29 -0.46 -18.30 16 13 C 0.50 21.60 7.27 71.23 0.52 22.11 16 14 O -0.53 -24.78 15.59 21.96 0.34 -24.44 16 15 C -0.67 -20.65 2.52 -11.54 -0.03 -20.68 16 16 S 2.55 80.60 5.09 -56.49 -0.29 80.31 16 17 O -0.95 -38.78 16.41 -125.03 -2.05 -40.83 16 18 O -0.93 -26.64 17.07 -127.65 -2.18 -28.81 16 19 C -0.67 -20.14 5.61 22.27 0.12 -20.02 16 20 C -0.03 -0.66 9.47 22.27 0.21 -0.45 16 21 C -0.14 -2.45 10.05 22.27 0.22 -2.23 16 22 C -0.06 -1.15 10.05 22.27 0.22 -0.92 16 23 C -0.15 -3.91 10.05 22.27 0.22 -3.69 16 24 C -0.05 -1.55 9.48 22.27 0.21 -1.34 16 25 C -0.08 -1.51 9.70 30.62 0.30 -1.21 16 26 C -0.09 -1.99 9.99 30.62 0.31 -1.69 16 27 H 0.05 2.40 8.14 -2.39 -0.02 2.38 16 28 H 0.03 1.34 8.14 -2.38 -0.02 1.32 16 29 H 0.08 4.13 6.53 -2.39 -0.02 4.12 16 30 H 0.27 14.63 8.31 -92.71 -0.77 13.86 16 31 H 0.17 2.56 7.70 -2.91 -0.02 2.53 16 32 H 0.17 1.59 8.06 -2.91 -0.02 1.57 16 33 H 0.17 1.88 8.06 -2.91 -0.02 1.86 16 34 H 0.14 3.24 8.06 -2.91 -0.02 3.22 16 35 H 0.12 4.46 7.45 -2.91 -0.02 4.44 16 36 H 0.13 2.60 7.72 -2.39 -0.02 2.58 16 37 H 0.16 1.92 8.09 -2.39 -0.02 1.91 16 38 H 0.16 2.28 8.14 -2.39 -0.02 2.26 16 39 H 0.12 2.64 8.14 -2.39 -0.02 2.62 16 Total: -1.00 -79.28 353.68 2.44 -76.84 By element: Atomic # 1 Polarization: 15.49 SS G_CDS: 1.06 Total: 16.56 kcal Atomic # 6 Polarization: -58.21 SS G_CDS: 3.73 Total: -54.48 kcal Atomic # 7 Polarization: -52.88 SS G_CDS: 0.25 Total: -52.63 kcal Atomic # 8 Polarization: -108.04 SS G_CDS: -4.34 Total: -112.38 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Atomic # 16 Polarization: 80.60 SS G_CDS: -0.29 Total: 80.31 kcal Total: -79.28 2.44 -76.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646831927.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.141 kcal (2) G-P(sol) polarization free energy of solvation -79.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds