Wall clock time and date at job start Tue Mar 31 2020 13:54:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08992 * 109.47519 * 2 1 4 4 C 1.50699 * 109.46824 * 120.00788 * 2 1 3 5 5 H 1.07994 * 120.00365 * 115.09000 * 4 2 1 6 6 C 1.37879 * 119.99755 * 295.08311 * 4 2 1 7 7 N 1.31512 * 120.00193 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 120.00064 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.46557 * 60.00316 * 8 6 4 10 10 H 1.48490 * 109.47360 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.47414 * 300.00634 * 8 6 4 12 12 O 1.45209 * 109.46902 * 240.00238 * 2 1 3 13 13 C 1.34234 * 116.99699 * 87.68312 * 12 2 1 14 14 O 1.20827 * 119.99801 * 356.55588 * 13 12 2 15 15 C 1.50700 * 119.99491 * 176.55589 * 13 12 2 16 16 S 1.81401 * 115.55095 * 67.29723 * 15 13 12 17 17 O 1.42102 * 110.53924 * 151.64576 * 16 15 13 18 18 O 1.42097 * 110.54214 * 288.39562 * 16 15 13 19 19 C 1.76198 * 104.44835 * 40.01996 * 16 15 13 20 20 C 1.38234 * 120.00116 * 264.03859 * 19 16 15 21 21 C 1.38233 * 119.99857 * 179.78979 * 20 19 16 22 22 C 1.38238 * 120.00122 * 0.44163 * 21 20 19 23 23 C 1.38230 * 120.00076 * 359.81390 * 22 21 20 24 24 C 1.38236 * 119.99763 * 84.31431 * 19 16 15 25 25 C 1.52999 * 117.49919 * 281.62315 * 15 13 12 26 26 C 1.52999 * 60.03419 * 252.48238 * 25 15 13 27 27 H 1.08999 * 109.47123 * 299.99871 * 1 2 3 28 28 H 1.09002 * 109.46665 * 59.99518 * 1 2 3 29 29 H 1.08991 * 109.47297 * 179.97438 * 1 2 3 30 30 H 0.96993 * 120.00324 * 179.97438 * 7 6 4 31 31 H 1.08003 * 119.99677 * 0.02562 * 20 19 16 32 32 H 1.08007 * 119.99910 * 180.27252 * 21 20 19 33 33 H 1.08005 * 120.00163 * 179.83179 * 22 21 20 34 34 H 1.08000 * 120.00380 * 179.97438 * 23 22 21 35 35 H 1.08004 * 120.00389 * 359.97438 * 24 19 16 36 36 H 1.09001 * 117.49663 * 359.97438 * 25 15 13 37 37 H 1.08998 * 117.50088 * 144.97598 * 25 15 13 38 38 H 1.08997 * 117.50155 * 107.50268 * 26 25 15 39 39 H 1.09001 * 117.49757 * 252.52630 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7106 1.2304 5 1 2.5862 -1.6326 1.1332 6 6 1.7848 -0.1835 2.4802 7 7 1.1099 0.9391 2.5985 8 14 2.4067 -1.0646 4.0054 9 1 3.8868 -1.1699 3.9471 10 1 2.0116 -0.2992 5.2149 11 1 1.8157 -2.4256 4.0665 12 8 2.0140 -0.6845 -1.1857 13 6 2.1715 0.0552 -2.2947 14 8 1.8549 1.2213 -2.2931 15 6 2.7432 -0.5688 -3.5416 16 16 1.7015 -1.8228 -4.3372 17 8 1.9557 -1.8685 -5.7346 18 8 1.6697 -3.0113 -3.5591 19 6 0.0662 -1.1786 -4.2138 20 6 -0.7569 -1.5764 -3.1769 21 6 -2.0384 -1.0676 -3.0777 22 6 -2.5000 -0.1681 -4.0204 23 6 -1.6787 0.2256 -5.0603 24 6 -0.3956 -0.2798 -5.1571 25 6 4.2590 -0.7686 -3.6004 26 6 3.5980 0.3194 -4.4492 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 0.9355 1.3097 3.4777 31 1 -0.3975 -2.2817 -2.4423 32 1 -2.6800 -1.3751 -2.2651 33 1 -3.5021 0.2273 -3.9444 34 1 -2.0394 0.9281 -5.7971 35 1 0.2461 0.0279 -5.9695 36 1 4.8427 -0.4483 -2.7374 37 1 4.6303 -1.6537 -4.1169 38 1 3.7469 1.3553 -4.1445 39 1 3.5341 0.1498 -5.5240 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001646831931.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:54:20 Heat of formation + Delta-G solvation = -95.592226 kcal Electronic energy + Delta-G solvation = -26308.082136 eV Core-core repulsion = 22502.617716 eV Total energy + Delta-G solvation = -3805.464420 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.091 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.97389 -39.04660 -37.43125 -36.86504 -36.01727 -35.58966 -33.29910 -31.33566 -31.01826 -29.78134 -25.67857 -25.28294 -23.26130 -22.82149 -22.67799 -21.70170 -20.28893 -18.87723 -18.25711 -17.48416 -16.70184 -16.40680 -16.05378 -15.91665 -15.50203 -14.86286 -14.69106 -14.60651 -14.49755 -14.14698 -13.52220 -13.14690 -12.99801 -12.45660 -12.31776 -12.22506 -12.17254 -12.03681 -11.84119 -11.76811 -11.36220 -11.26303 -11.25491 -11.07709 -10.90757 -10.86287 -10.52121 -10.47014 -10.35581 -9.86092 -9.65599 -9.39413 -9.04761 -8.98260 -8.56008 -6.25159 -4.31726 -0.06715 0.84834 1.33053 2.41895 2.83406 3.02881 3.23806 3.25556 3.27748 3.34391 3.45218 3.83021 4.10791 4.27226 4.31439 4.51784 4.82886 4.88044 4.95340 4.98236 5.09223 5.28491 5.31098 5.44859 5.57278 5.59635 5.68159 5.78805 5.92738 6.08198 6.22019 6.36026 6.51220 6.76200 6.78900 6.83625 6.99654 7.48558 7.58190 7.78471 8.02663 8.44886 8.79381 9.33893 10.83333 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.014350 B = 0.005031 C = 0.004317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1950.688618 B = 5564.404737 C = 6484.528336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.218 3.782 3 H 0.048 0.952 4 C -0.523 4.523 5 H 0.072 0.928 6 C 0.064 3.936 7 N -0.890 5.890 8 Si 0.912 3.088 9 H -0.274 1.274 10 H -0.285 1.285 11 H -0.273 1.273 12 O -0.343 6.343 13 C 0.506 3.494 14 O -0.494 6.494 15 C -0.648 4.648 16 S 2.542 3.458 17 O -0.930 6.930 18 O -0.912 6.912 19 C -0.660 4.660 20 C -0.009 4.009 21 C -0.136 4.136 22 C -0.063 4.063 23 C -0.144 4.144 24 C -0.018 4.018 25 C -0.102 4.102 26 C -0.100 4.100 27 H 0.092 0.908 28 H 0.020 0.980 29 H 0.040 0.960 30 H 0.267 0.733 31 H 0.147 0.853 32 H 0.134 0.866 33 H 0.129 0.871 34 H 0.131 0.869 35 H 0.137 0.863 36 H 0.125 0.875 37 H 0.118 0.882 38 H 0.124 0.876 39 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.406 -1.677 -15.138 15.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.166 3.834 3 H 0.066 0.934 4 C -0.561 4.561 5 H 0.090 0.910 6 C -0.138 4.138 7 N -0.527 5.527 8 Si 0.739 3.261 9 H -0.199 1.199 10 H -0.210 1.210 11 H -0.198 1.198 12 O -0.258 6.258 13 C 0.346 3.654 14 O -0.383 6.383 15 C -0.736 4.736 16 S 2.719 3.281 17 O -0.927 6.927 18 O -0.909 6.909 19 C -0.749 4.749 20 C -0.028 4.028 21 C -0.155 4.155 22 C -0.081 4.081 23 C -0.163 4.163 24 C -0.037 4.037 25 C -0.140 4.140 26 C -0.138 4.138 27 H 0.111 0.889 28 H 0.039 0.961 29 H 0.059 0.941 30 H 0.077 0.923 31 H 0.165 0.835 32 H 0.152 0.848 33 H 0.147 0.853 34 H 0.149 0.851 35 H 0.155 0.845 36 H 0.144 0.856 37 H 0.136 0.864 38 H 0.142 0.858 39 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -1.342 -1.958 -15.280 15.463 hybrid contribution -0.319 0.571 1.424 1.567 sum -1.661 -1.387 -13.855 14.023 Atomic orbital electron populations 1.22153 0.97519 1.00177 1.01248 1.20744 0.91505 0.93869 0.77283 0.93375 1.20968 1.36620 1.09731 0.88747 0.91031 1.24890 0.94906 0.94991 0.99056 1.69918 1.39121 1.19071 1.24586 0.86324 0.79368 0.79543 0.80883 1.19916 1.21034 1.19783 1.86536 1.75790 1.43693 1.19826 1.20752 0.75871 0.84915 0.83884 1.90608 1.46492 1.17257 1.83922 1.31475 1.09669 1.23265 1.09193 1.04084 0.74724 0.74766 0.74518 1.93557 1.85138 1.85916 1.28093 1.93596 1.85521 1.39896 1.71933 1.30311 1.23284 1.15052 1.06229 1.21103 0.93211 0.94771 0.93666 1.21324 0.96306 0.98223 0.99618 1.21494 0.99409 0.94189 0.92985 1.21221 0.94391 1.01280 0.99439 1.20848 0.96184 0.91336 0.95297 1.23006 0.85823 1.01640 1.03521 1.23119 0.95181 0.98261 0.97211 0.88934 0.96102 0.94094 0.92274 0.83543 0.84781 0.85286 0.85139 0.84506 0.85650 0.86361 0.85805 0.85342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.73 9.34 37.16 0.35 -3.38 16 2 C 0.22 5.72 2.41 -27.88 -0.07 5.65 16 3 H 0.05 1.39 7.29 -51.93 -0.38 1.01 16 4 C -0.52 -14.43 8.84 -34.44 -0.30 -14.73 16 5 H 0.07 1.95 7.81 -52.49 -0.41 1.54 16 6 C 0.06 1.74 5.32 -17.82 -0.09 1.64 16 7 N -0.89 -24.87 11.69 55.43 0.65 -24.22 16 8 Si 0.91 20.84 29.54 -169.99 -5.02 15.82 16 9 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 10 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 11 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 12 O -0.34 -8.06 9.87 -39.27 -0.39 -8.45 16 13 C 0.51 10.39 6.50 36.01 0.23 10.63 16 14 O -0.49 -11.18 16.04 -18.75 -0.30 -11.48 16 15 C -0.65 -10.11 2.66 -91.73 -0.24 -10.36 16 16 S 2.54 39.86 5.34 -107.50 -0.57 39.29 16 17 O -0.93 -14.22 16.61 -57.54 -0.96 -15.18 16 18 O -0.91 -16.74 16.98 -57.54 -0.98 -17.71 16 19 C -0.66 -10.38 5.00 -39.58 -0.20 -10.58 16 20 C -0.01 -0.14 9.48 -39.58 -0.38 -0.51 16 21 C -0.14 -1.88 10.05 -39.58 -0.40 -2.28 16 22 C -0.06 -0.75 10.05 -39.58 -0.40 -1.15 16 23 C -0.14 -1.73 10.05 -39.58 -0.40 -2.13 16 24 C -0.02 -0.24 9.47 -39.58 -0.37 -0.61 16 25 C -0.10 -1.21 10.00 -26.73 -0.27 -1.48 16 26 C -0.10 -1.15 9.70 -26.69 -0.26 -1.41 16 27 H 0.09 2.41 6.47 -51.93 -0.34 2.07 16 28 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.27 7.06 8.31 -40.82 -0.34 6.73 16 31 H 0.15 2.43 7.43 -52.48 -0.39 2.04 16 32 H 0.13 1.58 8.06 -52.48 -0.42 1.16 16 33 H 0.13 1.15 8.06 -52.48 -0.42 0.73 16 34 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 35 H 0.14 1.53 7.72 -52.48 -0.41 1.12 16 36 H 0.13 1.47 8.14 -51.93 -0.42 1.05 16 37 H 0.12 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.12 1.42 8.03 -51.93 -0.42 1.00 16 39 H 0.13 1.14 7.68 -51.93 -0.40 0.74 16 LS Contribution 353.71 15.07 5.33 5.33 Total: -1.00 -33.86 353.71 -9.86 -43.73 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: -4.83 Total: 3.60 kcal Atomic # 6 Polarization: -27.93 SS G_CDS: -2.80 Total: -30.72 kcal Atomic # 7 Polarization: -24.87 SS G_CDS: 0.65 Total: -24.22 kcal Atomic # 8 Polarization: -50.20 SS G_CDS: -2.62 Total: -52.82 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Atomic # 16 Polarization: 39.86 SS G_CDS: -0.57 Total: 39.29 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -33.86 -9.86 -43.73 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646831931.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.866 kcal (2) G-P(sol) polarization free energy of solvation -33.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds