Wall clock time and date at job start Tue Mar 31 2020 13:54:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08992 * 109.47519 * 2 1 4 4 C 1.50699 * 109.46824 * 120.00788 * 2 1 3 5 5 H 1.07994 * 120.00365 * 115.09000 * 4 2 1 6 6 C 1.37879 * 119.99755 * 295.08311 * 4 2 1 7 7 N 1.31512 * 120.00193 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 120.00064 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.46557 * 60.00316 * 8 6 4 10 10 H 1.48490 * 109.47360 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.47414 * 300.00634 * 8 6 4 12 12 O 1.45209 * 109.46902 * 240.00238 * 2 1 3 13 13 C 1.34234 * 116.99699 * 87.68312 * 12 2 1 14 14 O 1.20827 * 119.99801 * 356.55588 * 13 12 2 15 15 C 1.50700 * 119.99491 * 176.55589 * 13 12 2 16 16 S 1.81401 * 115.55095 * 67.29723 * 15 13 12 17 17 O 1.42102 * 110.53924 * 151.64576 * 16 15 13 18 18 O 1.42097 * 110.54214 * 288.39562 * 16 15 13 19 19 C 1.76198 * 104.44835 * 40.01996 * 16 15 13 20 20 C 1.38234 * 120.00116 * 264.03859 * 19 16 15 21 21 C 1.38233 * 119.99857 * 179.78979 * 20 19 16 22 22 C 1.38238 * 120.00122 * 0.44163 * 21 20 19 23 23 C 1.38230 * 120.00076 * 359.81390 * 22 21 20 24 24 C 1.38236 * 119.99763 * 84.31431 * 19 16 15 25 25 C 1.52999 * 117.49919 * 281.62315 * 15 13 12 26 26 C 1.52999 * 60.03419 * 252.48238 * 25 15 13 27 27 H 1.08999 * 109.47123 * 299.99871 * 1 2 3 28 28 H 1.09002 * 109.46665 * 59.99518 * 1 2 3 29 29 H 1.08991 * 109.47297 * 179.97438 * 1 2 3 30 30 H 0.96993 * 120.00324 * 179.97438 * 7 6 4 31 31 H 1.08003 * 119.99677 * 0.02562 * 20 19 16 32 32 H 1.08007 * 119.99910 * 180.27252 * 21 20 19 33 33 H 1.08005 * 120.00163 * 179.83179 * 22 21 20 34 34 H 1.08000 * 120.00380 * 179.97438 * 23 22 21 35 35 H 1.08004 * 120.00389 * 359.97438 * 24 19 16 36 36 H 1.09001 * 117.49663 * 359.97438 * 25 15 13 37 37 H 1.08998 * 117.50088 * 144.97598 * 25 15 13 38 38 H 1.08997 * 117.50155 * 107.50268 * 26 25 15 39 39 H 1.09001 * 117.49757 * 252.52630 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7106 1.2304 5 1 2.5862 -1.6326 1.1332 6 6 1.7848 -0.1835 2.4802 7 7 1.1099 0.9391 2.5985 8 14 2.4067 -1.0646 4.0054 9 1 3.8868 -1.1699 3.9471 10 1 2.0116 -0.2992 5.2149 11 1 1.8157 -2.4256 4.0665 12 8 2.0140 -0.6845 -1.1857 13 6 2.1715 0.0552 -2.2947 14 8 1.8549 1.2213 -2.2931 15 6 2.7432 -0.5688 -3.5416 16 16 1.7015 -1.8228 -4.3372 17 8 1.9557 -1.8685 -5.7346 18 8 1.6697 -3.0113 -3.5591 19 6 0.0662 -1.1786 -4.2138 20 6 -0.7569 -1.5764 -3.1769 21 6 -2.0384 -1.0676 -3.0777 22 6 -2.5000 -0.1681 -4.0204 23 6 -1.6787 0.2256 -5.0603 24 6 -0.3956 -0.2798 -5.1571 25 6 4.2590 -0.7686 -3.6004 26 6 3.5980 0.3194 -4.4492 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 0.9355 1.3097 3.4777 31 1 -0.3975 -2.2817 -2.4423 32 1 -2.6800 -1.3751 -2.2651 33 1 -3.5021 0.2273 -3.9444 34 1 -2.0394 0.9281 -5.7971 35 1 0.2461 0.0279 -5.9695 36 1 4.8427 -0.4483 -2.7374 37 1 4.6303 -1.6537 -4.1169 38 1 3.7469 1.3553 -4.1445 39 1 3.5341 0.1498 -5.5240 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001646831931.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:54:19 Heat of formation + Delta-G solvation = -116.871954 kcal Electronic energy + Delta-G solvation = -26309.004894 eV Core-core repulsion = 22502.617716 eV Total energy + Delta-G solvation = -3806.387179 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.091 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.61901 -40.06381 -38.71405 -38.21054 -37.33830 -37.18189 -35.34739 -32.36672 -32.06387 -31.78947 -27.51065 -26.94511 -24.35674 -23.82046 -23.66419 -23.35907 -21.95494 -20.18317 -19.63265 -18.77269 -18.59967 -18.02640 -17.40908 -17.00993 -16.90281 -16.44992 -16.44162 -15.77473 -15.55781 -15.38043 -14.83668 -14.54457 -14.37380 -14.07969 -13.98274 -13.46784 -13.35314 -13.29088 -13.28508 -13.23354 -12.95244 -12.86954 -12.72301 -12.47814 -12.39795 -12.26029 -12.20164 -11.98427 -11.66841 -11.59274 -11.47351 -11.08233 -10.64003 -10.42736 -10.04672 -8.33171 -6.49173 -1.26243 -0.21495 0.29031 1.00545 1.35973 1.43426 1.44273 1.53801 1.84475 1.98998 2.31460 2.37511 2.70362 2.96478 2.99031 3.19511 3.49208 3.68956 3.81508 3.90939 4.06659 4.24053 4.35017 4.40508 4.42844 4.47348 4.67604 4.69138 4.74403 4.76437 4.89327 4.92184 5.04178 5.06243 5.23707 5.34766 5.43950 5.52598 5.78680 5.84866 5.98456 6.53009 6.79018 7.21996 8.75511 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.014350 B = 0.005031 C = 0.004317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1950.688618 B = 5564.404737 C = 6484.528336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.221 3.779 3 H 0.012 0.988 4 C -0.551 4.551 5 H 0.067 0.933 6 C 0.021 3.979 7 N -0.916 5.916 8 Si 0.979 3.021 9 H -0.267 1.267 10 H -0.276 1.276 11 H -0.265 1.265 12 O -0.355 6.355 13 C 0.506 3.494 14 O -0.521 6.521 15 C -0.673 4.673 16 S 2.557 3.443 17 O -0.925 6.925 18 O -0.949 6.949 19 C -0.681 4.681 20 C -0.042 4.042 21 C -0.150 4.150 22 C -0.061 4.061 23 C -0.143 4.143 24 C -0.030 4.030 25 C -0.097 4.097 26 C -0.078 4.078 27 H 0.074 0.926 28 H 0.027 0.973 29 H 0.047 0.953 30 H 0.272 0.728 31 H 0.125 0.875 32 H 0.146 0.854 33 H 0.165 0.835 34 H 0.169 0.831 35 H 0.161 0.839 36 H 0.123 0.877 37 H 0.153 0.847 38 H 0.124 0.876 39 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.278 -1.418 -16.556 16.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.168 3.832 3 H 0.030 0.970 4 C -0.588 4.588 5 H 0.085 0.915 6 C -0.179 4.179 7 N -0.553 5.553 8 Si 0.802 3.198 9 H -0.192 1.192 10 H -0.201 1.201 11 H -0.190 1.190 12 O -0.271 6.271 13 C 0.348 3.652 14 O -0.410 6.410 15 C -0.761 4.761 16 S 2.736 3.264 17 O -0.922 6.922 18 O -0.946 6.946 19 C -0.770 4.770 20 C -0.061 4.061 21 C -0.169 4.169 22 C -0.079 4.079 23 C -0.161 4.161 24 C -0.049 4.049 25 C -0.135 4.135 26 C -0.115 4.115 27 H 0.093 0.907 28 H 0.046 0.954 29 H 0.066 0.934 30 H 0.081 0.919 31 H 0.143 0.857 32 H 0.164 0.836 33 H 0.183 0.817 34 H 0.186 0.814 35 H 0.178 0.822 36 H 0.142 0.858 37 H 0.171 0.829 38 H 0.142 0.858 39 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -1.203 -1.712 -16.723 16.854 hybrid contribution -0.379 0.576 1.773 1.902 sum -1.582 -1.137 -14.950 15.077 Atomic orbital electron populations 1.21932 0.96496 1.00385 1.00573 1.20439 0.92260 0.91988 0.78465 0.97006 1.21234 1.37568 1.10028 0.89963 0.91478 1.25779 0.94643 0.95568 1.01944 1.70026 1.39567 1.20183 1.25564 0.85291 0.79021 0.78574 0.76924 1.19192 1.20053 1.18997 1.86521 1.76241 1.44032 1.20318 1.21484 0.74900 0.84638 0.84190 1.90576 1.47543 1.18450 1.84473 1.31454 1.11628 1.25333 1.07723 1.03483 0.74653 0.74152 0.74083 1.93546 1.85261 1.85973 1.27428 1.93548 1.86110 1.42202 1.72752 1.30307 1.23105 1.16451 1.07159 1.21112 0.94762 0.95945 0.94276 1.21608 0.95747 0.98760 1.00774 1.21963 1.00996 0.92908 0.92008 1.21746 0.93583 1.00953 0.99822 1.21293 0.97487 0.90768 0.95345 1.23420 0.82865 1.03319 1.03850 1.23465 0.91622 0.97963 0.98460 0.90744 0.95386 0.93357 0.91886 0.85661 0.83609 0.81744 0.81352 0.82168 0.85823 0.82926 0.85756 0.81911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.89 9.34 71.98 0.67 -6.21 16 2 C 0.22 12.11 2.41 29.85 0.07 12.18 16 3 H 0.01 0.73 7.29 -2.39 -0.02 0.72 16 4 C -0.55 -31.28 8.84 25.60 0.23 -31.05 16 5 H 0.07 3.77 7.81 -2.91 -0.02 3.75 16 6 C 0.02 1.15 5.32 84.66 0.45 1.60 16 7 N -0.92 -52.15 11.69 21.45 0.25 -51.89 16 8 Si 0.98 42.74 29.54 68.60 2.03 44.76 16 9 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 10 H -0.28 -11.54 7.11 99.48 0.71 -10.84 16 11 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 12 O -0.35 -17.40 9.87 -51.46 -0.51 -17.91 16 13 C 0.51 21.27 6.50 71.24 0.46 21.73 16 14 O -0.52 -24.16 16.04 21.96 0.35 -23.80 16 15 C -0.67 -20.56 2.66 -11.51 -0.03 -20.59 16 16 S 2.56 79.36 5.34 -56.49 -0.30 79.06 16 17 O -0.92 -26.64 16.61 -127.65 -2.12 -28.76 16 18 O -0.95 -35.88 16.98 -127.65 -2.17 -38.05 16 19 C -0.68 -21.38 5.00 22.27 0.11 -21.27 16 20 C -0.04 -1.39 9.48 22.27 0.21 -1.18 16 21 C -0.15 -4.15 10.05 22.27 0.22 -3.92 16 22 C -0.06 -1.34 10.05 22.27 0.22 -1.12 16 23 C -0.14 -3.03 10.05 22.27 0.22 -2.80 16 24 C -0.03 -0.76 9.47 22.27 0.21 -0.55 16 25 C -0.10 -2.13 10.00 30.59 0.31 -1.82 16 26 C -0.08 -1.60 9.70 30.62 0.30 -1.31 16 27 H 0.07 4.01 6.47 -2.39 -0.02 4.00 16 28 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 30 H 0.27 14.48 8.31 -92.71 -0.77 13.71 16 31 H 0.13 4.54 7.43 -2.91 -0.02 4.51 16 32 H 0.15 3.47 8.06 -2.91 -0.02 3.45 16 33 H 0.17 2.36 8.06 -2.91 -0.02 2.33 16 34 H 0.17 2.23 8.06 -2.91 -0.02 2.20 16 35 H 0.16 3.14 7.72 -2.91 -0.02 3.12 16 36 H 0.12 2.77 8.14 -2.39 -0.02 2.75 16 37 H 0.15 2.27 8.14 -2.39 -0.02 2.25 16 38 H 0.12 2.60 8.03 -2.39 -0.02 2.58 16 39 H 0.16 2.24 7.68 -2.39 -0.02 2.22 16 Total: -1.00 -75.97 353.71 2.26 -73.72 By element: Atomic # 1 Polarization: 18.15 SS G_CDS: 1.06 Total: 19.21 kcal Atomic # 6 Polarization: -59.99 SS G_CDS: 3.66 Total: -56.33 kcal Atomic # 7 Polarization: -52.15 SS G_CDS: 0.25 Total: -51.89 kcal Atomic # 8 Polarization: -104.08 SS G_CDS: -4.44 Total: -108.52 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.76 kcal Atomic # 16 Polarization: 79.36 SS G_CDS: -0.30 Total: 79.06 kcal Total: -75.97 2.26 -73.72 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646831931.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.155 kcal (2) G-P(sol) polarization free energy of solvation -75.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds