Wall clock time and date at job start Tue Mar 31 2020 14:35:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.39749 * 120.04063 * 126.79994 * 3 2 1 5 5 C 1.37597 * 120.05940 * 180.02562 * 4 3 2 6 6 C 1.39748 * 120.15417 * 359.97438 * 5 4 3 7 7 C 1.47902 * 119.96013 * 179.97438 * 6 5 4 8 8 O 1.21556 * 119.99757 * 179.72207 * 7 6 5 9 9 N 1.34773 * 119.99944 * 0.02562 * 7 6 5 10 10 C 1.39892 * 120.00466 * 175.47900 * 9 7 6 11 11 C 1.38938 * 120.00547 * 214.84976 * 10 9 7 12 12 C 1.37991 * 119.99563 * 179.80961 * 11 10 9 13 13 C 1.38919 * 120.00529 * 0.43997 * 12 11 10 14 14 O 1.35770 * 120.00037 * 179.77174 * 13 12 11 15 15 C 1.34807 * 117.00219 * 185.37491 * 14 13 12 16 16 H 1.08007 * 119.99994 * 354.95872 * 15 14 13 17 17 C 1.38637 * 120.00346 * 174.96103 * 15 14 13 18 18 N 1.31574 * 119.99830 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00086 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47075 * 59.99958 * 19 17 15 21 21 H 1.48497 * 109.46915 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.47129 * 299.99523 * 19 17 15 23 23 C 1.38915 * 120.00105 * 359.79033 * 13 12 11 24 24 C 1.37993 * 120.00942 * 359.97438 * 23 13 12 25 25 C 1.39432 * 120.08511 * 0.27278 * 6 5 4 26 26 C 1.38441 * 119.93740 * 359.47572 * 25 6 5 27 27 O 1.35726 * 120.07668 * 180.23116 * 26 25 6 28 28 H 1.08001 * 119.97683 * 0.02562 * 4 3 2 29 29 H 1.08005 * 119.92458 * 179.97438 * 5 4 3 30 30 H 0.97007 * 119.99876 * 355.47438 * 9 7 6 31 31 H 1.07998 * 120.00664 * 0.02562 * 11 10 9 32 32 H 1.08005 * 120.00141 * 180.21058 * 12 11 10 33 33 H 0.96992 * 120.00256 * 180.02562 * 18 17 15 34 34 H 1.08007 * 119.99244 * 179.97438 * 23 13 12 35 35 H 1.07994 * 120.00071 * 179.97438 * 24 23 13 36 36 H 1.07995 * 120.02756 * 179.72739 * 25 6 5 37 37 H 0.96698 * 113.99946 * 270.29588 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2673 0.7256 -0.9687 5 6 4.6433 0.7261 -0.9694 6 6 5.3460 0.0027 -0.0020 7 6 6.8250 0.0057 -0.0071 8 8 7.4369 -0.6192 0.8371 9 7 7.4942 0.7063 -0.9440 10 6 8.8899 0.7868 -0.8932 11 6 9.5336 1.9516 -1.2923 12 6 10.9101 2.0322 -1.2384 13 6 11.6528 0.9456 -0.7938 14 8 13.0074 1.0234 -0.7452 15 6 13.6734 -0.1001 -0.4114 16 1 13.1274 -0.9847 -0.1183 17 6 15.0592 -0.1202 -0.4444 18 7 15.7244 0.9572 -0.8019 19 14 15.9821 -1.6769 0.0188 20 1 15.5855 -2.7779 -0.8953 21 1 17.4432 -1.4393 -0.0979 22 1 15.6511 -2.0510 1.4173 23 6 11.0095 -0.2207 -0.3993 24 6 9.6327 -0.3000 -0.4484 25 6 4.6546 -0.7270 0.9643 26 6 3.2702 -0.7258 0.9716 27 8 2.5944 -1.4313 1.9137 28 1 2.7273 1.2861 -1.7175 29 1 5.1815 1.2868 -1.7193 30 1 7.0081 1.1546 -1.6537 31 1 8.9566 2.7951 -1.6413 32 1 11.4104 2.9388 -1.5453 33 1 16.6940 0.9431 -0.8253 34 1 11.5870 -1.0655 -0.0540 35 1 9.1328 -1.2069 -0.1421 36 1 5.1986 -1.2892 1.7088 37 1 2.3991 -2.3430 1.6575 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001647155291.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:35:05 Heat of formation + Delta-G solvation = -8.934596 kcal Electronic energy + Delta-G solvation = -24550.953468 eV Core-core repulsion = 20646.095604 eV Total energy + Delta-G solvation = -3904.857864 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.094 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.98436 -39.88371 -38.72399 -37.28931 -36.88185 -36.46961 -34.19521 -32.32210 -32.00558 -30.61410 -30.27056 -28.14271 -25.68578 -25.00572 -23.29389 -22.52703 -21.73166 -20.54141 -19.85820 -18.75524 -18.12760 -17.75256 -17.17057 -16.69779 -16.02481 -15.69002 -15.22238 -14.96823 -14.62868 -14.51697 -14.19960 -14.13557 -14.06903 -13.65374 -13.62443 -13.38557 -12.98356 -12.92966 -12.69539 -12.53692 -12.26891 -11.79828 -11.64114 -11.58305 -11.36737 -11.04577 -10.82426 -10.48440 -9.99627 -9.79190 -9.62289 -9.38042 -9.25678 -8.74998 -8.27505 -7.01911 -6.48554 -4.06071 -0.20023 0.59403 1.88020 2.13050 2.17523 2.28189 2.86687 2.99647 3.12866 3.13655 3.16243 3.27241 3.33004 3.53458 3.94665 4.17684 4.34846 4.46092 4.52973 4.69180 4.86677 5.05682 5.20079 5.21584 5.43225 5.53515 5.60100 5.63856 5.68518 5.92854 6.03790 6.10474 6.25693 6.64416 6.77786 6.92166 6.94511 7.00531 7.00938 7.24086 7.38053 7.52524 7.69293 7.96166 8.14417 8.96925 9.65231 10.68976 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.031888 B = 0.002094 C = 0.001983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.852853 B =13370.129199 C =14113.813851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.407 5.407 2 C 0.256 3.744 3 C -0.039 4.039 4 C -0.059 4.059 5 C -0.099 4.099 6 C -0.078 4.078 7 C 0.544 3.456 8 O -0.514 6.514 9 N -0.648 5.648 10 C 0.026 3.974 11 C -0.089 4.089 12 C -0.178 4.178 13 C 0.148 3.852 14 O -0.174 6.174 15 C -0.391 4.391 16 H 0.093 0.907 17 C 0.040 3.960 18 N -0.861 5.861 19 Si 0.941 3.059 20 H -0.269 1.269 21 H -0.278 1.278 22 H -0.269 1.269 23 C -0.222 4.222 24 C -0.061 4.061 25 C -0.088 4.088 26 C 0.152 3.848 27 O -0.488 6.488 28 H 0.145 0.855 29 H 0.143 0.857 30 H 0.402 0.598 31 H 0.116 0.884 32 H 0.122 0.878 33 H 0.271 0.729 34 H 0.131 0.869 35 H 0.126 0.874 36 H 0.156 0.844 37 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.105 -2.155 -2.121 22.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.082 5.082 2 C -0.059 4.059 3 C -0.043 4.043 4 C -0.080 4.080 5 C -0.118 4.118 6 C -0.082 4.082 7 C 0.331 3.669 8 O -0.390 6.390 9 N -0.292 5.292 10 C -0.066 4.066 11 C -0.109 4.109 12 C -0.198 4.198 13 C 0.094 3.906 14 O -0.077 6.077 15 C -0.467 4.467 16 H 0.110 0.890 17 C -0.165 4.165 18 N -0.496 5.496 19 Si 0.766 3.234 20 H -0.195 1.195 21 H -0.203 1.203 22 H -0.194 1.194 23 C -0.242 4.242 24 C -0.081 4.081 25 C -0.107 4.107 26 C 0.104 3.896 27 O -0.300 6.300 28 H 0.163 0.837 29 H 0.160 0.840 30 H 0.238 0.762 31 H 0.134 0.866 32 H 0.140 0.860 33 H 0.081 0.919 34 H 0.149 0.851 35 H 0.143 0.857 36 H 0.174 0.826 37 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -22.986 -1.827 -1.250 23.093 hybrid contribution 0.551 -0.951 -0.307 1.141 sum -22.436 -2.778 -1.557 22.661 Atomic orbital electron populations 1.81269 1.11879 1.07487 1.07577 1.25398 0.92354 0.94296 0.93862 1.16555 0.84948 1.04330 0.98453 1.21025 0.93823 0.96599 0.96534 1.21284 0.93772 0.98478 0.98280 1.20112 0.93576 0.98138 0.96358 1.18172 0.86527 0.80584 0.81663 1.90820 1.68741 1.41852 1.37595 1.43042 1.06057 1.51902 1.28240 1.17194 0.80601 0.95939 1.12839 1.20346 0.93786 0.95095 1.01662 1.19998 0.92330 0.98896 1.08600 1.19434 0.85202 0.93247 0.92734 1.83968 1.12282 1.35992 1.75451 1.21302 0.89136 0.89879 1.46432 0.88984 1.25298 0.95613 0.98932 0.96647 1.70030 1.08219 1.27696 1.43611 0.85772 0.78344 0.79963 0.79337 1.19454 1.20273 1.19421 1.21107 0.94018 0.99824 1.09205 1.20843 0.93040 0.96975 0.97226 1.21533 0.92295 0.98556 0.98307 1.18228 0.89419 0.94377 0.87560 1.84805 1.76037 1.28965 1.40172 0.83697 0.83983 0.76230 0.86621 0.85964 0.91908 0.85123 0.85654 0.82622 0.74188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -4.40 18.54 41.84 0.78 -3.62 16 2 C 0.26 2.18 14.85 -22.47 -0.33 1.84 16 3 C -0.04 -0.26 5.75 -106.68 -0.61 -0.87 16 4 C -0.06 -0.28 9.73 -39.25 -0.38 -0.67 16 5 C -0.10 -0.53 9.51 -39.25 -0.37 -0.90 16 6 C -0.08 -0.65 5.87 -104.93 -0.62 -1.27 16 7 C 0.54 6.70 7.61 -12.30 -0.09 6.61 16 8 O -0.51 -8.45 13.77 5.32 0.07 -8.37 16 9 N -0.65 -7.57 5.28 -10.66 -0.06 -7.63 16 10 C 0.03 0.43 6.30 -83.66 -0.53 -0.10 16 11 C -0.09 -1.42 9.96 -39.41 -0.39 -1.81 16 12 C -0.18 -3.51 9.98 -39.42 -0.39 -3.90 16 13 C 0.15 3.46 6.65 -39.08 -0.26 3.20 16 14 O -0.17 -4.83 9.75 0.05 0.00 -4.83 16 15 C -0.39 -10.71 9.48 30.88 0.29 -10.42 16 16 H 0.09 2.33 5.20 -52.48 -0.27 2.06 16 17 C 0.04 1.07 5.49 -17.51 -0.10 0.98 16 18 N -0.86 -24.74 13.67 55.48 0.76 -23.98 16 19 Si 0.94 20.20 29.55 -169.99 -5.02 15.17 16 20 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 21 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 22 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 23 C -0.22 -4.77 9.16 -39.42 -0.36 -5.13 16 24 C -0.06 -1.15 8.68 -39.41 -0.34 -1.49 16 25 C -0.09 -0.71 9.52 -39.06 -0.37 -1.09 16 26 C 0.15 1.08 6.70 -38.78 -0.26 0.82 16 27 O -0.49 -3.26 12.92 -18.88 -0.24 -3.50 16 28 H 0.15 0.35 8.06 -52.49 -0.42 -0.07 16 29 H 0.14 0.39 6.39 -52.48 -0.34 0.05 16 30 H 0.40 3.01 6.85 -40.82 -0.28 2.73 16 31 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 32 H 0.12 2.28 8.06 -52.48 -0.42 1.86 16 33 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 34 H 0.13 2.84 5.63 -52.48 -0.30 2.54 16 35 H 0.13 2.31 6.23 -52.49 -0.33 1.98 16 36 H 0.16 1.36 7.63 -52.49 -0.40 0.96 16 37 H 0.40 0.82 9.06 45.56 0.41 1.23 16 LS Contribution 339.53 15.07 5.12 5.12 Total: -1.00 -34.92 339.53 -5.62 -40.54 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: -1.90 Total: 5.31 kcal Atomic # 6 Polarization: -9.09 SS G_CDS: -5.12 Total: -14.21 kcal Atomic # 7 Polarization: -36.71 SS G_CDS: 1.48 Total: -35.23 kcal Atomic # 8 Polarization: -16.53 SS G_CDS: -0.17 Total: -16.70 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.17 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -34.92 -5.62 -40.54 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647155291.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.606 kcal (2) G-P(sol) polarization free energy of solvation -34.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds