Wall clock time and date at job start Tue Mar 31 2020 14:35:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.39749 * 120.04063 * 126.79994 * 3 2 1 5 5 C 1.37597 * 120.05940 * 180.02562 * 4 3 2 6 6 C 1.39748 * 120.15417 * 359.97438 * 5 4 3 7 7 C 1.47902 * 119.96013 * 179.97438 * 6 5 4 8 8 O 1.21556 * 119.99757 * 179.72207 * 7 6 5 9 9 N 1.34773 * 119.99944 * 0.02562 * 7 6 5 10 10 C 1.39892 * 120.00466 * 175.47900 * 9 7 6 11 11 C 1.38938 * 120.00547 * 214.84976 * 10 9 7 12 12 C 1.37991 * 119.99563 * 179.80961 * 11 10 9 13 13 C 1.38919 * 120.00529 * 0.43997 * 12 11 10 14 14 O 1.35770 * 120.00037 * 179.77174 * 13 12 11 15 15 C 1.34807 * 117.00219 * 185.37491 * 14 13 12 16 16 H 1.08007 * 119.99994 * 354.95872 * 15 14 13 17 17 C 1.38637 * 120.00346 * 174.96103 * 15 14 13 18 18 N 1.31574 * 119.99830 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00086 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47075 * 59.99958 * 19 17 15 21 21 H 1.48497 * 109.46915 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.47129 * 299.99523 * 19 17 15 23 23 C 1.38915 * 120.00105 * 359.79033 * 13 12 11 24 24 C 1.37993 * 120.00942 * 359.97438 * 23 13 12 25 25 C 1.39432 * 120.08511 * 0.27278 * 6 5 4 26 26 C 1.38441 * 119.93740 * 359.47572 * 25 6 5 27 27 O 1.35726 * 120.07668 * 180.23116 * 26 25 6 28 28 H 1.08001 * 119.97683 * 0.02562 * 4 3 2 29 29 H 1.08005 * 119.92458 * 179.97438 * 5 4 3 30 30 H 0.97007 * 119.99876 * 355.47438 * 9 7 6 31 31 H 1.07998 * 120.00664 * 0.02562 * 11 10 9 32 32 H 1.08005 * 120.00141 * 180.21058 * 12 11 10 33 33 H 0.96992 * 120.00256 * 180.02562 * 18 17 15 34 34 H 1.08007 * 119.99244 * 179.97438 * 23 13 12 35 35 H 1.07994 * 120.00071 * 179.97438 * 24 23 13 36 36 H 1.07995 * 120.02756 * 179.72739 * 25 6 5 37 37 H 0.96698 * 113.99946 * 270.29588 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2673 0.7256 -0.9687 5 6 4.6433 0.7261 -0.9694 6 6 5.3460 0.0027 -0.0020 7 6 6.8250 0.0057 -0.0071 8 8 7.4369 -0.6192 0.8371 9 7 7.4942 0.7063 -0.9440 10 6 8.8899 0.7868 -0.8932 11 6 9.5336 1.9516 -1.2923 12 6 10.9101 2.0322 -1.2384 13 6 11.6528 0.9456 -0.7938 14 8 13.0074 1.0234 -0.7452 15 6 13.6734 -0.1001 -0.4114 16 1 13.1274 -0.9847 -0.1183 17 6 15.0592 -0.1202 -0.4444 18 7 15.7244 0.9572 -0.8019 19 14 15.9821 -1.6769 0.0188 20 1 15.5855 -2.7779 -0.8953 21 1 17.4432 -1.4393 -0.0979 22 1 15.6511 -2.0510 1.4173 23 6 11.0095 -0.2207 -0.3993 24 6 9.6327 -0.3000 -0.4484 25 6 4.6546 -0.7270 0.9643 26 6 3.2702 -0.7258 0.9716 27 8 2.5944 -1.4313 1.9137 28 1 2.7273 1.2861 -1.7175 29 1 5.1815 1.2868 -1.7193 30 1 7.0081 1.1546 -1.6537 31 1 8.9566 2.7951 -1.6413 32 1 11.4104 2.9388 -1.5453 33 1 16.6940 0.9431 -0.8253 34 1 11.5870 -1.0655 -0.0540 35 1 9.1328 -1.2069 -0.1421 36 1 5.1986 -1.2892 1.7088 37 1 2.3991 -2.3430 1.6575 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001647155291.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:35:04 Heat of formation + Delta-G solvation = -34.530264 kcal Electronic energy + Delta-G solvation = -24552.063379 eV Core-core repulsion = 20646.095604 eV Total energy + Delta-G solvation = -3905.967775 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.094 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.85119 -40.89199 -40.16919 -38.22919 -37.80896 -37.41898 -35.49227 -34.16946 -32.74054 -31.82060 -31.19965 -29.52780 -27.35848 -26.08469 -23.99243 -23.80843 -23.06493 -21.69902 -20.44760 -20.01481 -19.43256 -19.00030 -18.21807 -17.97854 -16.83209 -16.57804 -16.25834 -16.23241 -15.94335 -15.53200 -15.46364 -15.28376 -15.13248 -14.77596 -14.72505 -14.59498 -14.12331 -14.07888 -13.60020 -13.57197 -13.33174 -13.20907 -13.04282 -12.77114 -12.67485 -12.42620 -12.13895 -11.92391 -11.41694 -11.20115 -10.87220 -10.52428 -10.20224 -9.88049 -9.80417 -8.59883 -8.45077 -6.11593 -0.81039 0.12302 0.55530 0.59932 1.35808 1.36769 1.47296 1.52050 1.52633 1.96728 2.13078 2.19651 2.64130 2.71582 2.85659 3.01991 3.17811 3.52902 3.56035 3.75595 4.01546 4.13203 4.15516 4.17311 4.38154 4.51700 4.68047 4.73353 4.80636 4.93042 5.03369 5.10101 5.13873 5.16030 5.36419 5.44574 5.51173 5.60322 5.73327 6.04273 6.18224 6.34293 6.49211 6.63865 6.99603 7.15062 7.79318 8.77215 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.031888 B = 0.002094 C = 0.001983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.852853 B =13370.129199 C =14113.813851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C 0.279 3.721 3 C -0.039 4.039 4 C -0.041 4.041 5 C -0.081 4.081 6 C -0.087 4.087 7 C 0.547 3.453 8 O -0.560 6.560 9 N -0.636 5.636 10 C 0.059 3.941 11 C -0.072 4.072 12 C -0.182 4.182 13 C 0.107 3.893 14 O -0.227 6.227 15 C -0.413 4.413 16 H 0.098 0.902 17 C -0.021 4.021 18 N -0.917 5.917 19 Si 1.015 2.985 20 H -0.258 1.258 21 H -0.270 1.270 22 H -0.261 1.261 23 C -0.232 4.232 24 C -0.074 4.074 25 C -0.098 4.098 26 C 0.155 3.845 27 O -0.504 6.504 28 H 0.179 0.821 29 H 0.178 0.822 30 H 0.428 0.572 31 H 0.172 0.828 32 H 0.128 0.872 33 H 0.273 0.727 34 H 0.116 0.884 35 H 0.128 0.872 36 H 0.141 0.859 37 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.486 -1.625 -3.396 25.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.127 5.127 2 C -0.036 4.036 3 C -0.044 4.044 4 C -0.061 4.061 5 C -0.100 4.100 6 C -0.091 4.091 7 C 0.336 3.664 8 O -0.439 6.439 9 N -0.283 5.283 10 C -0.034 4.034 11 C -0.091 4.091 12 C -0.201 4.201 13 C 0.056 3.944 14 O -0.134 6.134 15 C -0.489 4.489 16 H 0.115 0.885 17 C -0.218 4.218 18 N -0.555 5.555 19 Si 0.834 3.166 20 H -0.182 1.182 21 H -0.195 1.195 22 H -0.185 1.185 23 C -0.251 4.251 24 C -0.094 4.094 25 C -0.117 4.117 26 C 0.108 3.892 27 O -0.318 6.318 28 H 0.197 0.803 29 H 0.195 0.805 30 H 0.269 0.731 31 H 0.190 0.810 32 H 0.146 0.854 33 H 0.082 0.918 34 H 0.133 0.867 35 H 0.146 0.854 36 H 0.159 0.841 37 H 0.279 0.721 Dipole moment (debyes) X Y Z Total from point charges -26.477 -1.299 -2.555 26.631 hybrid contribution 1.099 -1.080 0.087 1.543 sum -25.378 -2.379 -2.468 25.608 Atomic orbital electron populations 1.81303 1.13232 1.09055 1.09082 1.25570 0.92471 0.92982 0.92543 1.16669 0.83951 1.04757 0.98994 1.21374 0.93583 0.95209 0.95949 1.21574 0.93924 0.97054 0.97420 1.19796 0.90908 1.00226 0.98141 1.18761 0.88117 0.78964 0.80548 1.90817 1.70094 1.43576 1.39376 1.42918 1.04007 1.52114 1.29244 1.17315 0.82854 0.94625 1.08617 1.20809 0.92372 0.96362 0.99585 1.20351 0.93949 0.98033 1.07801 1.19995 0.84356 0.95255 0.94785 1.83931 1.14349 1.36532 1.78570 1.21719 0.89921 0.90417 1.46841 0.88486 1.26511 0.96230 1.02586 0.96517 1.70165 1.08456 1.30279 1.46615 0.84699 0.76892 0.75598 0.79380 1.18226 1.19463 1.18521 1.21106 0.95282 0.99106 1.09646 1.20951 0.92044 0.98398 0.98035 1.21427 0.92734 0.99090 0.98476 1.18140 0.88948 0.94525 0.87633 1.84760 1.75871 1.30469 1.40689 0.80340 0.80469 0.73079 0.81045 0.85360 0.91826 0.86668 0.85412 0.84148 0.72055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -8.94 18.54 19.00 0.35 -8.59 16 2 C 0.28 3.99 14.85 88.33 1.31 5.30 16 3 C -0.04 -0.38 5.75 -21.20 -0.12 -0.50 16 4 C -0.04 -0.17 9.73 22.48 0.22 0.05 16 5 C -0.08 -0.41 9.51 22.48 0.21 -0.19 16 6 C -0.09 -1.16 5.87 -20.06 -0.12 -1.28 16 7 C 0.55 11.88 7.61 86.80 0.66 12.54 16 8 O -0.56 -17.83 13.77 -3.89 -0.05 -17.89 16 9 N -0.64 -12.00 5.28 -305.93 -1.62 -13.61 16 10 C 0.06 1.74 6.30 38.19 0.24 1.98 16 11 C -0.07 -2.02 9.96 22.38 0.22 -1.80 16 12 C -0.18 -7.01 9.98 22.37 0.22 -6.79 16 13 C 0.11 5.18 6.65 22.60 0.15 5.33 16 14 O -0.23 -13.44 9.75 -22.73 -0.22 -13.66 16 15 C -0.41 -24.00 9.48 67.92 0.64 -23.36 16 16 H 0.10 5.26 5.20 -2.91 -0.02 5.24 16 17 C -0.02 -1.17 5.49 84.83 0.47 -0.70 16 18 N -0.92 -55.65 13.67 21.61 0.30 -55.36 16 19 Si 1.01 42.96 29.55 68.60 2.03 44.99 16 20 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 21 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 22 H -0.26 -10.51 7.11 99.48 0.71 -9.81 16 23 C -0.23 -10.35 9.16 22.37 0.20 -10.14 16 24 C -0.07 -2.76 8.68 22.38 0.19 -2.57 16 25 C -0.10 -1.41 9.52 22.61 0.22 -1.20 16 26 C 0.16 1.84 6.70 22.79 0.15 2.00 16 27 O -0.50 -5.94 12.92 -90.49 -1.17 -7.11 16 28 H 0.18 -0.33 8.06 -2.91 -0.02 -0.36 16 29 H 0.18 -0.38 6.39 -2.91 -0.02 -0.39 16 30 H 0.43 3.65 6.85 -92.70 -0.63 3.01 16 31 H 0.17 2.99 8.06 -2.91 -0.02 2.97 16 32 H 0.13 4.73 8.06 -2.91 -0.02 4.71 16 33 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 34 H 0.12 5.36 5.63 -2.91 -0.02 5.35 16 35 H 0.13 4.70 6.23 -2.91 -0.02 4.68 16 36 H 0.14 2.44 7.63 -2.91 -0.02 2.42 16 37 H 0.42 1.11 9.06 -74.06 -0.67 0.44 16 Total: -1.00 -84.04 339.53 4.38 -79.66 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: -0.12 Total: 12.90 kcal Atomic # 6 Polarization: -26.21 SS G_CDS: 4.88 Total: -21.33 kcal Atomic # 7 Polarization: -76.59 SS G_CDS: -0.97 Total: -77.56 kcal Atomic # 8 Polarization: -37.22 SS G_CDS: -1.44 Total: -38.66 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.99 kcal Total: -84.04 4.38 -79.66 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647155291.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.128 kcal (2) G-P(sol) polarization free energy of solvation -84.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds