Wall clock time and date at job start Tue Mar 31 2020 13:36:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86799 * 120.00013 * 2 1 4 4 H 1.48504 * 109.47178 * 239.99739 * 3 2 1 5 5 H 1.48503 * 109.47360 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47679 * 119.99645 * 3 2 1 7 7 C 1.39924 * 120.00198 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00364 * 168.45270 * 7 2 1 9 9 C 1.41416 * 119.99952 * 348.45097 * 7 2 1 10 10 C 1.40787 * 120.20609 * 332.60100 * 9 7 2 11 11 C 1.37648 * 119.89340 * 179.97438 * 10 9 7 12 12 C 1.38521 * 120.32918 * 0.02562 * 11 10 9 13 13 C 1.39306 * 120.41951 * 359.97362 * 12 11 10 14 14 N 1.39751 * 119.95211 * 179.97438 * 13 12 11 15 15 C 1.38513 * 119.99985 * 150.05005 * 14 13 12 16 16 N 1.30231 * 125.58392 * 354.33926 * 15 14 13 17 17 N 1.26255 * 117.65630 * 179.97438 * 16 15 14 18 18 C 1.30448 * 116.37141 * 359.97438 * 17 16 15 19 19 C 1.47724 * 126.14674 * 180.02562 * 18 17 16 20 20 C 1.39602 * 119.75385 * 359.97266 * 19 18 17 21 21 C 1.38308 * 119.04762 * 179.97438 * 20 19 18 22 22 C 1.38849 * 118.53872 * 0.02562 * 21 20 19 23 23 C 1.38253 * 119.41396 * 359.97438 * 22 21 20 24 24 N 1.31743 * 120.91865 * 359.72029 * 23 22 21 25 25 S 1.71280 * 125.58685 * 174.28760 * 15 14 13 26 26 C 1.38327 * 120.09540 * 0.27794 * 13 12 11 27 27 H 0.97003 * 120.00521 * 0.02562 * 1 2 3 28 28 H 1.07997 * 120.05451 * 0.02562 * 10 9 7 29 29 H 1.08002 * 119.83840 * 179.97438 * 11 10 9 30 30 H 1.07994 * 119.79108 * 179.97438 * 12 11 10 31 31 H 0.97003 * 119.99981 * 330.06291 * 14 13 12 32 32 H 1.08003 * 120.47297 * 0.02562 * 20 19 18 33 33 H 1.08010 * 120.72742 * 180.02562 * 21 20 19 34 34 H 1.07999 * 120.29538 * 180.02562 * 22 21 20 35 35 H 1.07996 * 119.54045 * 179.97438 * 23 22 21 36 36 H 1.08000 * 120.16168 * 179.71988 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0961 1.6964 -1.2125 5 1 1.2773 2.7465 -0.0006 6 1 3.0960 1.6966 1.2125 7 6 2.0079 -1.2118 0.0005 8 1 3.0716 -1.2213 -0.1867 9 6 1.3223 -2.4240 0.2463 10 6 0.1500 -2.4292 1.0258 11 6 -0.5125 -3.6128 1.2605 12 6 -0.0312 -4.8001 0.7338 13 6 1.1275 -4.8103 -0.0394 14 7 1.6047 -6.0139 -0.5655 15 6 2.3060 -6.0179 -1.7600 16 7 2.4928 -4.9862 -2.5325 17 7 3.1587 -5.1597 -3.5910 18 6 3.5986 -6.3686 -3.8073 19 6 4.3957 -6.8109 -4.9698 20 6 4.7407 -5.8925 -5.9630 21 6 5.4878 -6.3223 -7.0447 22 6 5.8668 -7.6569 -7.1009 23 6 5.4908 -8.5129 -6.0825 24 7 4.7839 -8.0784 -5.0592 25 16 3.0706 -7.3801 -2.4623 26 6 1.8100 -3.6318 -0.2819 27 1 -0.4851 0.8400 -0.0004 28 1 -0.2294 -1.5061 1.4383 29 1 -1.4115 -3.6158 1.8590 30 1 -0.5577 -5.7237 0.9237 31 1 1.4445 -6.8465 -0.0943 32 1 4.4293 -4.8611 -5.8874 33 1 5.7702 -5.6348 -7.8284 34 1 6.4508 -8.0228 -7.9324 35 1 5.7841 -9.5515 -6.1243 36 1 2.7110 -3.6392 -0.8774 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001651858071.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:36:19 Heat of formation + Delta-G solvation = 132.609971 kcal Electronic energy + Delta-G solvation = -22678.165976 eV Core-core repulsion = 19254.491568 eV Total energy + Delta-G solvation = -3423.674409 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 324.074 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.87596 -40.06710 -38.15130 -35.60936 -33.40473 -32.84100 -32.36199 -29.99419 -29.38005 -28.17576 -25.97784 -25.18524 -23.75576 -23.32314 -21.46820 -21.05789 -19.65571 -19.03177 -17.82288 -17.07827 -16.56112 -16.18014 -15.72769 -15.63485 -15.27130 -14.83014 -14.63140 -14.12656 -13.99057 -13.35158 -13.28119 -13.11130 -12.88438 -12.31586 -12.15914 -12.03300 -11.49405 -11.13014 -11.00288 -10.69219 -10.48166 -10.42238 -10.17311 -10.12637 -9.85044 -9.73240 -9.68825 -9.33129 -9.26340 -9.05189 -8.28289 -7.48613 -6.80256 -6.67856 -4.37579 0.20535 0.84133 1.05681 1.36647 1.52268 2.73016 2.84116 3.09122 3.11027 3.12870 3.22983 3.32482 3.71891 3.75204 3.96955 4.55707 4.62979 4.63751 4.82859 4.90438 5.07480 5.21895 5.49127 5.62699 5.66907 5.86858 5.99286 6.16139 6.30382 6.42686 6.53744 6.89289 6.96749 7.06685 7.25159 7.45858 7.64268 7.66778 7.82371 7.99920 8.06215 8.28739 8.62960 8.90273 8.92982 8.99561 10.23495 Molecular weight = 324.07amu Principal moments of inertia in cm(-1) A = 0.014989 B = 0.003179 C = 0.002679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1867.563998 B = 8804.599218 C =10449.994879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.798 5.798 2 C 0.074 3.926 3 Si 0.912 3.088 4 H -0.265 1.265 5 H -0.278 1.278 6 H -0.264 1.264 7 C -0.453 4.453 8 H 0.077 0.923 9 C 0.122 3.878 10 C -0.166 4.166 11 C -0.091 4.091 12 C -0.258 4.258 13 C 0.150 3.850 14 N -0.604 5.604 15 C 0.269 3.731 16 N -0.311 5.311 17 N -0.184 5.184 18 C -0.015 4.015 19 C 0.215 3.785 20 C -0.131 4.131 21 C -0.072 4.072 22 C -0.173 4.173 23 C 0.106 3.894 24 N -0.479 5.479 25 S 0.121 5.879 26 C -0.208 4.208 27 H 0.280 0.720 28 H 0.124 0.876 29 H 0.094 0.906 30 H 0.090 0.910 31 H 0.417 0.583 32 H 0.148 0.852 33 H 0.140 0.860 34 H 0.137 0.863 35 H 0.160 0.840 36 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.065 -13.684 -9.201 18.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.424 5.424 2 C -0.143 4.143 3 Si 0.736 3.264 4 H -0.189 1.189 5 H -0.203 1.203 6 H -0.189 1.189 7 C -0.483 4.483 8 H 0.095 0.905 9 C 0.119 3.881 10 C -0.186 4.186 11 C -0.110 4.110 12 C -0.281 4.281 13 C 0.056 3.944 14 N -0.231 5.231 15 C -0.101 4.101 16 N -0.160 5.160 17 N -0.025 5.025 18 C -0.295 4.295 19 C 0.076 3.924 20 C -0.154 4.154 21 C -0.098 4.098 22 C -0.194 4.194 23 C -0.053 4.053 24 N -0.189 5.189 25 S 0.362 5.638 26 C -0.230 4.230 27 H 0.091 0.909 28 H 0.142 0.858 29 H 0.112 0.888 30 H 0.109 0.891 31 H 0.254 0.746 32 H 0.166 0.834 33 H 0.158 0.842 34 H 0.155 0.845 35 H 0.177 0.823 36 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 7.485 -13.682 -8.464 17.744 hybrid contribution 0.387 0.955 -0.573 1.179 sum 7.872 -12.727 -9.037 17.482 Atomic orbital electron populations 1.69785 1.07450 1.29168 1.35972 1.25885 0.94828 1.01256 0.92320 0.86308 0.80019 0.80081 0.79967 1.18930 1.20342 1.18891 1.19531 0.96162 0.90401 1.42198 0.90491 1.17463 0.91315 0.91522 0.87791 1.21464 0.98793 0.96772 1.01592 1.20467 0.98353 0.92648 0.99512 1.19968 0.98714 0.97582 1.11786 1.17482 0.94802 0.83658 0.98409 1.41482 1.53859 1.10281 1.17527 1.26129 0.96721 0.93758 0.93447 1.71785 1.19940 1.23571 1.00751 1.71680 1.05078 1.15716 1.09976 1.26694 1.10371 0.92122 1.00309 1.18166 0.94112 0.89458 0.90688 1.22134 0.98126 1.01634 0.93532 1.21584 0.94996 0.95972 0.97279 1.22225 1.01926 0.94590 1.00685 1.22652 0.93540 1.00208 0.88899 1.67585 1.11493 1.14952 1.24916 1.84594 1.49888 1.11178 1.18137 1.21010 1.03169 0.91566 1.07267 0.90867 0.85848 0.88791 0.89146 0.74560 0.83372 0.84216 0.84540 0.82270 0.86955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.83 10.79 55.55 0.60 -20.23 16 2 C 0.07 1.89 5.25 -17.35 -0.09 1.80 16 3 Si 0.91 19.09 29.57 -169.99 -5.03 14.06 16 4 H -0.26 -5.54 7.11 56.52 0.40 -5.14 16 5 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 6 H -0.26 -5.44 7.11 56.52 0.40 -5.03 16 7 C -0.45 -12.28 9.07 -37.74 -0.34 -12.62 16 8 H 0.08 2.03 7.87 -52.48 -0.41 1.62 16 9 C 0.12 3.30 5.56 -106.85 -0.59 2.71 16 10 C -0.17 -4.28 8.67 -38.83 -0.34 -4.61 16 11 C -0.09 -2.07 10.01 -39.69 -0.40 -2.47 16 12 C -0.26 -5.54 9.96 -39.08 -0.39 -5.93 16 13 C 0.15 3.32 6.40 -83.82 -0.54 2.79 16 14 N -0.60 -10.84 5.49 -11.54 -0.06 -10.90 16 15 C 0.27 4.97 7.87 -87.33 -0.69 4.28 16 16 N -0.31 -6.64 8.86 29.90 0.27 -6.38 16 17 N -0.18 -3.57 11.30 32.99 0.37 -3.20 16 18 C -0.02 -0.25 7.49 -14.26 -0.11 -0.36 16 19 C 0.21 3.04 6.75 -83.04 -0.56 2.48 16 20 C -0.13 -1.57 9.73 -39.05 -0.38 -1.95 16 21 C -0.07 -0.63 10.16 -39.33 -0.40 -1.03 16 22 C -0.17 -1.33 10.11 -39.35 -0.40 -1.73 16 23 C 0.11 0.97 11.17 -17.58 -0.20 0.78 16 24 N -0.48 -6.14 10.15 -9.86 -0.10 -6.24 16 25 S 0.12 1.80 23.12 -107.50 -2.49 -0.69 16 26 C -0.21 -5.24 8.52 -38.67 -0.33 -5.57 16 27 H 0.28 6.68 8.30 -40.82 -0.34 6.34 16 28 H 0.12 3.27 6.13 -52.49 -0.32 2.94 16 29 H 0.09 1.88 8.06 -52.49 -0.42 1.46 16 30 H 0.09 1.66 8.06 -52.49 -0.42 1.24 16 31 H 0.42 5.80 8.92 -40.82 -0.36 5.44 16 32 H 0.15 1.79 7.84 -52.48 -0.41 1.38 16 33 H 0.14 0.83 8.06 -52.48 -0.42 0.40 16 34 H 0.14 0.61 8.06 -52.49 -0.42 0.19 16 35 H 0.16 0.96 8.06 -52.49 -0.42 0.53 16 36 H 0.11 2.91 6.18 -52.49 -0.32 2.59 16 LS Contribution 332.87 15.07 5.02 5.02 Total: -1.00 -31.02 332.87 -10.25 -41.28 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: -3.08 Total: 8.72 kcal Atomic # 6 Polarization: -15.69 SS G_CDS: -5.74 Total: -21.43 kcal Atomic # 7 Polarization: -48.02 SS G_CDS: 1.07 Total: -46.95 kcal Atomic # 14 Polarization: 19.09 SS G_CDS: -5.03 Total: 14.06 kcal Atomic # 16 Polarization: 1.80 SS G_CDS: -2.49 Total: -0.69 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -31.02 -10.25 -41.28 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001651858071.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.885 kcal (2) G-P(sol) polarization free energy of solvation -31.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 142.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.275 kcal (6) G-S(sol) free energy of system = (1) + (5) 132.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds