Wall clock time and date at job start Tue Mar 31 2020 13:53:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09003 * 109.46853 * 2 1 4 4 C 1.52997 * 109.47071 * 119.99507 * 2 1 3 5 5 C 1.52999 * 109.47273 * 185.00175 * 4 2 1 6 6 N 1.46496 * 109.47233 * 180.02562 * 5 4 2 7 7 C 1.36941 * 119.99672 * 179.97438 * 6 5 4 8 8 H 1.07993 * 120.00178 * 359.97438 * 7 6 5 9 9 C 1.38817 * 119.99916 * 180.02562 * 7 6 5 10 10 N 1.31608 * 120.00094 * 180.02562 * 9 7 6 11 11 Si 1.86805 * 119.99682 * 359.97438 * 9 7 6 12 12 H 1.48498 * 109.47183 * 90.00476 * 11 9 7 13 13 H 1.48502 * 109.46697 * 209.99944 * 11 9 7 14 14 H 1.48499 * 109.47044 * 329.99955 * 11 9 7 15 15 N 1.46496 * 109.47004 * 239.99833 * 2 1 3 16 16 C 1.34773 * 119.99974 * 85.00249 * 15 2 1 17 17 O 1.21736 * 120.00452 * 359.71680 * 16 15 2 18 18 C 1.46406 * 120.00022 * 180.02562 * 16 15 2 19 19 C 1.35241 * 124.96365 * 179.72542 * 18 16 15 20 20 C 1.39887 * 115.35983 * 179.97438 * 19 18 16 21 21 S 1.77319 * 137.31566 * 179.97438 * 20 19 18 22 22 C 1.75297 * 91.42359 * 180.02562 * 21 20 19 23 23 C 1.32207 * 110.47764 * 359.97438 * 22 21 20 24 24 C 1.37476 * 113.45950 * 359.97438 * 20 19 18 25 25 S 1.75313 * 124.95644 * 359.41600 * 18 16 15 26 26 H 1.09000 * 109.47106 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47148 * 300.00192 * 1 2 3 28 28 H 1.09003 * 109.46845 * 60.00230 * 1 2 3 29 29 H 1.09000 * 109.47462 * 305.00462 * 4 2 1 30 30 H 1.09004 * 109.47184 * 64.99920 * 4 2 1 31 31 H 1.09000 * 109.47110 * 300.00502 * 5 4 2 32 32 H 1.09004 * 109.47224 * 59.99769 * 5 4 2 33 33 H 0.96999 * 120.00106 * 0.02562 * 6 5 4 34 34 H 0.97001 * 120.00407 * 179.97438 * 10 9 7 35 35 H 0.97004 * 120.00003 * 264.99474 * 15 2 1 36 36 H 1.07998 * 122.32035 * 359.97185 * 19 18 16 37 37 H 1.08006 * 124.76291 * 179.97438 * 22 21 20 38 38 H 1.07998 * 122.08042 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 3.5648 -0.6132 1.3138 6 7 4.0532 -1.3042 2.5097 7 6 5.3954 -1.3410 2.7790 8 1 6.0938 -0.8610 2.1096 9 6 5.8582 -1.9962 3.9119 10 7 7.1481 -2.0312 4.1710 11 14 4.6501 -2.8271 5.0693 12 1 4.4440 -4.2345 4.6429 13 1 5.1925 -2.8031 6.4515 14 1 3.3534 -2.1041 5.0337 15 7 2.0183 -0.6906 -1.1961 16 6 2.1471 -0.0183 -2.3571 17 8 1.8528 1.1616 -2.4131 18 6 2.6346 -0.7086 -3.5526 19 6 2.7968 -0.1352 -4.7666 20 6 3.2767 -0.9831 -5.7704 21 16 3.6875 -0.8639 -7.4912 22 6 4.1435 -2.5557 -7.5445 23 6 3.9853 -3.1149 -6.3570 24 6 3.5027 -2.2688 -5.3391 25 16 3.1004 -2.3975 -3.6175 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.6054 -0.2616 2.1370 30 1 1.7517 -1.7714 1.2057 31 1 3.9995 -1.0726 0.4261 32 1 3.8532 0.4371 1.3573 33 1 3.4259 -1.7362 3.1103 34 1 7.4715 -2.4887 4.9628 35 1 2.2491 -1.6318 -1.1525 36 1 2.5714 0.9052 -4.9486 37 1 4.5032 -3.0692 -8.4239 38 1 4.2120 -4.1556 -6.1783 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753975302.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:53:06 Heat of formation + Delta-G solvation = 4.939201 kcal Electronic energy + Delta-G solvation = -21591.059863 eV Core-core repulsion = 18265.000435 eV Total energy + Delta-G solvation = -3326.059428 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 324.071 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.12125 -39.60544 -38.00626 -36.26775 -35.51430 -33.82576 -32.55767 -29.90828 -29.40012 -26.28930 -25.66231 -23.97026 -23.08539 -22.53549 -21.83654 -20.59737 -19.64447 -19.29113 -17.74356 -17.41824 -17.22410 -16.61807 -16.29363 -15.83474 -15.60523 -15.46771 -15.20944 -14.95210 -14.80242 -14.52502 -14.30695 -14.00979 -13.91672 -13.36554 -13.06492 -12.97259 -12.95670 -12.42553 -12.32021 -12.27932 -12.21856 -12.01684 -11.85919 -11.78013 -11.75199 -11.29504 -10.98927 -10.44883 -10.28895 -9.57871 -9.32654 -8.72535 -8.03810 -5.38937 -0.98292 -0.05941 0.46155 0.66296 0.74081 1.10103 1.38677 1.40825 1.43637 1.51148 1.96682 2.02187 2.48744 3.27310 3.39217 3.57880 3.80937 3.90544 3.97768 4.07009 4.21742 4.29877 4.51076 4.56291 4.60281 4.64916 4.72855 4.80590 4.81862 4.97183 5.01096 5.12644 5.13545 5.22089 5.29859 5.43713 5.73309 6.19564 6.30488 6.96789 7.06594 7.80684 8.02674 9.17889 Molecular weight = 324.07amu Principal moments of inertia in cm(-1) A = 0.015336 B = 0.002833 C = 0.002535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1825.329246 B = 9881.750700 C =11041.260977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.149 3.851 3 H 0.075 0.925 4 C -0.124 4.124 5 C 0.154 3.846 6 N -0.756 5.756 7 C -0.242 4.242 8 H 0.049 0.951 9 C -0.066 4.066 10 N -0.985 5.985 11 Si 0.963 3.037 12 H -0.274 1.274 13 H -0.297 1.297 14 H -0.246 1.246 15 N -0.708 5.708 16 C 0.591 3.409 17 O -0.564 6.564 18 C -0.258 4.258 19 C -0.016 4.016 20 C -0.211 4.211 21 S 0.166 5.834 22 C -0.166 4.166 23 C -0.116 4.116 24 C -0.157 4.157 25 S 0.206 5.794 26 H 0.073 0.927 27 H 0.083 0.917 28 H 0.049 0.951 29 H 0.095 0.905 30 H 0.088 0.912 31 H 0.022 0.978 32 H 0.012 0.988 33 H 0.369 0.631 34 H 0.259 0.741 35 H 0.406 0.594 36 H 0.152 0.848 37 H 0.212 0.788 38 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.718 -3.258 -24.948 29.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.044 3.956 3 H 0.093 0.907 4 C -0.163 4.163 5 C 0.027 3.973 6 N -0.402 5.402 7 C -0.373 4.373 8 H 0.067 0.933 9 C -0.257 4.257 10 N -0.636 5.636 11 Si 0.789 3.211 12 H -0.199 1.199 13 H -0.224 1.224 14 H -0.171 1.171 15 N -0.359 5.359 16 C 0.378 3.622 17 O -0.446 6.446 18 C -0.380 4.380 19 C -0.052 4.052 20 C -0.335 4.335 21 S 0.427 5.573 22 C -0.305 4.305 23 C -0.148 4.148 24 C -0.285 4.285 25 S 0.471 5.529 26 H 0.092 0.908 27 H 0.102 0.898 28 H 0.068 0.932 29 H 0.114 0.886 30 H 0.106 0.894 31 H 0.040 0.960 32 H 0.030 0.970 33 H 0.203 0.797 34 H 0.068 0.932 35 H 0.242 0.758 36 H 0.169 0.831 37 H 0.229 0.771 38 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -14.717 -2.389 -24.967 29.080 hybrid contribution 0.252 -0.614 0.975 1.179 sum -14.465 -3.003 -23.992 28.176 Atomic orbital electron populations 1.22097 0.92905 1.03280 1.02835 1.20988 0.95365 0.96647 0.82553 0.90706 1.22006 0.94028 1.02464 0.97754 1.20759 0.93721 0.94490 0.88295 1.42652 1.03494 1.66630 1.27466 1.19009 0.83930 1.28271 1.06073 0.93336 1.25619 0.97716 1.01977 1.00390 1.69902 1.14427 1.49733 1.29494 0.85302 0.79268 0.78954 0.77587 1.19942 1.22371 1.17054 1.45974 1.66442 1.14233 1.09242 1.17021 0.77003 0.85755 0.82451 1.90809 1.52191 1.16305 1.85252 1.23845 1.15837 1.00149 0.98169 1.19881 0.95515 1.00695 0.89109 1.22887 1.13043 0.96537 1.01083 1.84212 1.64904 1.08936 0.99229 1.25816 1.05075 0.97078 1.02504 1.19658 1.03141 1.01803 0.90236 1.23655 1.08471 0.97003 0.99411 1.84007 1.63355 1.03899 1.01656 0.90839 0.89767 0.93200 0.88622 0.89358 0.95979 0.97017 0.79680 0.93230 0.75754 0.83053 0.77142 0.81394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.01 9.48 71.98 0.68 -2.32 16 2 C 0.15 3.67 2.57 44.99 0.12 3.79 16 3 H 0.07 2.17 7.58 -2.39 -0.02 2.15 16 4 C -0.12 -3.25 4.87 30.59 0.15 -3.10 16 5 C 0.15 5.80 6.15 86.38 0.53 6.33 16 6 N -0.76 -35.08 5.41 -343.46 -1.86 -36.94 16 7 C -0.24 -14.06 10.47 84.03 0.88 -13.18 16 8 H 0.05 3.14 8.06 -2.91 -0.02 3.12 16 9 C -0.07 -3.89 5.50 84.86 0.47 -3.43 16 10 N -0.99 -63.78 13.97 21.65 0.30 -63.47 16 11 Si 0.96 44.71 27.73 68.60 1.90 46.62 16 12 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 13 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 14 H -0.25 -10.09 6.52 99.48 0.65 -9.44 16 15 N -0.71 -17.78 4.52 -446.75 -2.02 -19.80 16 16 C 0.59 17.05 7.74 86.37 0.67 17.72 16 17 O -0.56 -19.71 16.43 -4.46 -0.07 -19.78 16 18 C -0.26 -6.54 6.35 23.71 0.15 -6.39 16 19 C -0.02 -0.39 9.89 21.98 0.22 -0.17 16 20 C -0.21 -4.42 6.91 22.49 0.16 -4.26 16 21 S 0.17 2.40 23.34 -56.49 -1.32 1.08 16 22 C -0.17 -1.76 11.10 66.79 0.74 -1.02 16 23 C -0.12 -1.62 10.17 21.89 0.22 -1.40 16 24 C -0.16 -3.09 6.95 22.74 0.16 -2.93 16 25 S 0.21 4.26 22.32 -56.49 -1.26 3.00 16 26 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 27 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 28 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.10 2.31 8.14 -2.39 -0.02 2.29 16 30 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.02 0.86 7.75 -2.39 -0.02 0.84 16 32 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 33 H 0.37 15.78 5.53 -92.71 -0.51 15.27 16 34 H 0.26 15.86 8.31 -92.71 -0.77 15.09 16 35 H 0.41 8.96 7.66 -92.71 -0.71 8.25 16 36 H 0.15 3.57 7.99 -2.91 -0.02 3.55 16 37 H 0.21 0.63 8.06 -2.91 -0.02 0.61 16 38 H 0.17 1.57 8.06 -2.91 -0.02 1.54 16 Total: -1.00 -75.73 350.46 0.64 -75.10 By element: Atomic # 1 Polarization: 24.75 SS G_CDS: -0.18 Total: 24.57 kcal Atomic # 6 Polarization: -15.50 SS G_CDS: 5.14 Total: -10.36 kcal Atomic # 7 Polarization: -116.64 SS G_CDS: -3.58 Total: -120.22 kcal Atomic # 8 Polarization: -19.71 SS G_CDS: -0.07 Total: -19.78 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 1.90 Total: 46.62 kcal Atomic # 16 Polarization: 6.65 SS G_CDS: -2.58 Total: 4.08 kcal Total: -75.73 0.64 -75.10 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753975302.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.037 kcal (2) G-P(sol) polarization free energy of solvation -75.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.098 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds