Wall clock time and date at job start Tue Mar 31 2020 14:28:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86795 * 119.99959 * 2 1 4 4 H 1.48498 * 109.47517 * 239.99948 * 3 2 1 5 5 H 1.48505 * 109.47332 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46989 * 120.00101 * 3 2 1 7 7 C 1.38663 * 120.00220 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99731 * 179.97438 * 7 2 1 9 9 O 1.34828 * 119.99751 * 359.97438 * 7 2 1 10 10 C 1.35750 * 117.00075 * 174.94575 * 9 7 2 11 11 C 1.38874 * 120.06878 * 185.26035 * 10 9 7 12 12 C 1.38106 * 119.92542 * 179.72264 * 11 10 9 13 13 C 1.38304 * 120.07204 * 0.53100 * 12 11 10 14 14 C 1.50695 * 119.93307 * 179.74764 * 13 12 11 15 15 N 1.46508 * 109.47103 * 270.02170 * 14 13 12 16 16 C 1.34769 * 120.00011 * 179.97438 * 15 14 13 17 17 O 1.21277 * 120.00264 * 0.02562 * 16 15 14 18 18 C 1.50702 * 119.99776 * 179.97438 * 16 15 14 19 19 S 1.81402 * 109.47185 * 180.02562 * 18 16 15 20 20 C 1.81396 * 103.00320 * 180.02562 * 19 18 16 21 21 C 1.50694 * 109.47458 * 180.02562 * 20 19 18 22 22 N 1.34780 * 120.00295 * 180.02562 * 21 20 19 23 23 O 1.21277 * 119.99842 * 359.97438 * 21 20 19 24 24 C 1.38299 * 120.13445 * 359.76820 * 13 12 11 25 25 C 1.38101 * 120.07425 * 359.95492 * 24 13 12 26 26 H 0.96996 * 120.00178 * 359.97438 * 1 2 3 27 27 H 1.07996 * 120.03745 * 0.02562 * 11 10 9 28 28 H 1.07997 * 119.96326 * 180.27708 * 12 11 10 29 29 H 1.08998 * 109.47086 * 30.01537 * 14 13 12 30 30 H 1.08996 * 109.47192 * 150.02113 * 14 13 12 31 31 H 0.97001 * 119.99475 * 0.02562 * 15 14 13 32 32 H 1.08998 * 109.47596 * 300.00954 * 18 16 15 33 33 H 1.09005 * 109.46667 * 60.00766 * 18 16 15 34 34 H 1.08995 * 109.46930 * 300.00290 * 20 19 18 35 35 H 1.09006 * 109.47120 * 59.99468 * 20 19 18 36 36 H 0.96999 * 119.99529 * 359.97438 * 22 21 20 37 37 H 0.96997 * 120.00264 * 180.02562 * 22 21 20 38 38 H 1.07999 * 119.96503 * 179.97438 * 24 13 12 39 39 H 1.07992 * 120.03608 * 180.02562 * 25 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 3.1033 1.6965 -1.2124 5 1 1.2845 2.7465 0.0006 6 1 3.1033 1.6963 1.2125 7 6 2.0089 -1.2008 -0.0005 8 1 3.0889 -1.2007 -0.0010 9 8 1.3348 -2.3685 -0.0005 10 6 2.0700 -3.5046 -0.1076 11 6 1.4365 -4.7349 -0.2242 12 6 2.1874 -5.8884 -0.3387 13 6 3.5687 -5.8202 -0.3264 14 6 4.3849 -7.0813 -0.4459 15 7 4.6433 -7.6242 0.8901 16 6 5.3595 -8.7572 1.0302 17 8 5.7904 -9.3273 0.0503 18 6 5.6258 -9.3153 2.4045 19 16 6.6082 -10.8334 2.2608 20 6 6.8214 -11.3466 3.9875 21 6 7.6321 -12.6159 4.0379 22 7 7.9177 -13.1865 5.2251 23 8 8.0267 -13.1246 3.0102 24 6 4.2024 -4.5970 -0.2043 25 6 3.4573 -3.4394 -0.0951 26 1 -0.4850 0.8400 0.0004 27 1 0.3579 -4.7892 -0.2301 28 1 1.6954 -6.8451 -0.4339 29 1 3.8358 -7.8149 -1.0361 30 1 5.3320 -6.8560 -0.9360 31 1 4.2983 -7.1684 1.6738 32 1 6.1753 -8.5817 2.9944 33 1 4.6787 -9.5401 2.8951 34 1 7.3405 -10.5623 4.5382 35 1 5.8442 -11.5210 4.4380 36 1 7.6017 -12.7799 6.0471 37 1 8.4398 -14.0033 5.2576 38 1 5.2812 -4.5470 -0.1945 39 1 3.9527 -2.4846 -0.0001 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001771606811.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:11 Heat of formation + Delta-G solvation = -104.189100 kcal Electronic energy + Delta-G solvation = -22769.542295 eV Core-core repulsion = 18995.997838 eV Total energy + Delta-G solvation = -3773.544458 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.098 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.01217 -40.49928 -40.32717 -38.48857 -35.68280 -34.74627 -34.27990 -32.19604 -31.81035 -30.79106 -30.15719 -27.59890 -26.02538 -23.64275 -22.33058 -22.07948 -21.56617 -19.87284 -19.01898 -18.72733 -18.02485 -17.83448 -17.42572 -16.88116 -16.48738 -16.47554 -16.26304 -16.15778 -15.75752 -15.50833 -15.14797 -14.85036 -14.71177 -14.41893 -14.35720 -14.01981 -13.68547 -13.63543 -13.46276 -13.09356 -13.00013 -12.52378 -12.37179 -12.24733 -12.13544 -11.26012 -11.20219 -11.11756 -10.84501 -10.78276 -10.70372 -10.10945 -9.80704 -9.01031 -8.66516 -8.47825 -6.16124 0.29783 0.57933 0.58637 1.36429 1.45968 1.52096 1.53446 1.55773 1.58758 2.17548 2.29506 2.57593 2.85626 3.16645 3.49685 3.76793 3.90647 4.01315 4.02748 4.13994 4.15881 4.18204 4.33346 4.35136 4.45875 4.57305 4.76473 4.81140 5.04612 5.14594 5.27033 5.39605 5.52970 5.69557 5.75259 5.85944 6.01628 6.16212 6.39906 6.53073 6.96922 7.20859 7.30473 7.76012 8.74588 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.029175 B = 0.001736 C = 0.001701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.495610 B =16124.304329 C =16458.123898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.021 4.021 3 Si 1.017 2.983 4 H -0.259 1.259 5 H -0.273 1.273 6 H -0.256 1.256 7 C -0.415 4.415 8 H 0.104 0.896 9 O -0.229 6.229 10 C 0.122 3.878 11 C -0.204 4.204 12 C -0.043 4.043 13 C -0.181 4.181 14 C 0.185 3.815 15 N -0.707 5.707 16 C 0.524 3.476 17 O -0.572 6.572 18 C -0.124 4.124 19 S -0.205 6.205 20 C -0.130 4.130 21 C 0.528 3.472 22 N -0.829 5.829 23 O -0.583 6.583 24 C -0.045 4.045 25 C -0.244 4.244 26 H 0.273 0.727 27 H 0.115 0.885 28 H 0.148 0.852 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.415 0.585 32 H 0.142 0.858 33 H 0.143 0.857 34 H 0.145 0.855 35 H 0.145 0.855 36 H 0.422 0.578 37 H 0.410 0.590 38 H 0.139 0.861 39 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.968 -19.361 14.752 27.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.219 4.219 3 Si 0.836 3.164 4 H -0.183 1.183 5 H -0.198 1.198 6 H -0.180 1.180 7 C -0.491 4.491 8 H 0.121 0.879 9 O -0.135 6.135 10 C 0.071 3.929 11 C -0.224 4.224 12 C -0.061 4.061 13 C -0.183 4.183 14 C 0.062 3.938 15 N -0.360 5.360 16 C 0.310 3.690 17 O -0.452 6.452 18 C -0.275 4.275 19 S 0.019 5.981 20 C -0.281 4.281 21 C 0.312 3.688 22 N -0.394 5.394 23 O -0.463 6.463 24 C -0.063 4.063 25 C -0.263 4.263 26 H 0.082 0.918 27 H 0.133 0.867 28 H 0.165 0.835 29 H 0.090 0.910 30 H 0.087 0.913 31 H 0.252 0.748 32 H 0.160 0.840 33 H 0.161 0.839 34 H 0.163 0.837 35 H 0.163 0.837 36 H 0.254 0.746 37 H 0.242 0.758 38 H 0.157 0.843 39 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 13.391 -20.248 12.443 27.279 hybrid contribution -0.611 1.672 1.585 2.384 sum 12.780 -18.577 14.029 26.556 Atomic orbital electron populations 1.70169 1.08007 1.28915 1.48482 1.26569 0.96811 1.02727 0.95778 0.84668 0.77410 0.74363 0.79939 1.18335 1.19790 1.17994 1.21793 0.92579 0.81337 1.53349 0.87875 1.83946 1.36080 1.12674 1.80812 1.20006 0.91653 0.87951 0.93254 1.20449 1.00093 0.90415 1.11417 1.20884 0.93053 0.97003 0.95197 1.19460 0.93420 0.93991 1.11397 1.19876 0.98389 0.91454 0.84113 1.46023 1.54382 1.25465 1.10143 1.20183 0.77668 0.80497 0.90622 1.90758 1.52252 1.60366 1.41803 1.23542 1.06219 0.99719 0.98012 1.88780 1.70591 1.29965 1.08745 1.23572 1.06197 0.99472 0.98823 1.20084 0.79390 0.85400 0.83970 1.43575 1.57539 1.30374 1.07914 1.90817 1.54618 1.65314 1.35506 1.20942 0.99827 0.90732 0.94837 1.21250 0.92992 1.00097 1.11979 0.91815 0.86687 0.83467 0.91011 0.91259 0.74772 0.83983 0.83909 0.83738 0.83696 0.74605 0.75775 0.84283 0.86169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.79 13.67 21.62 0.30 -54.50 16 2 C -0.02 -1.15 5.49 84.84 0.47 -0.68 16 3 Si 1.02 41.32 29.55 68.60 2.03 43.34 16 4 H -0.26 -9.94 7.11 99.48 0.71 -9.24 16 5 H -0.27 -10.75 7.11 99.48 0.71 -10.05 16 6 H -0.26 -9.67 7.11 99.48 0.71 -8.96 16 7 C -0.41 -23.18 9.49 67.92 0.64 -22.53 16 8 H 0.10 5.24 5.20 -2.91 -0.02 5.22 16 9 O -0.23 -13.19 9.76 -22.72 -0.22 -13.41 16 10 C 0.12 5.68 6.65 22.58 0.15 5.83 16 11 C -0.20 -7.95 9.99 22.39 0.22 -7.73 16 12 C -0.04 -1.27 9.69 22.25 0.22 -1.05 16 13 C -0.18 -4.94 5.25 -19.84 -0.10 -5.04 16 14 C 0.18 4.25 5.80 85.63 0.50 4.75 16 15 N -0.71 -13.26 5.55 -466.80 -2.59 -15.85 16 16 C 0.52 11.33 7.85 87.66 0.69 12.02 16 17 O -0.57 -18.34 15.86 -3.02 -0.05 -18.38 16 18 C -0.12 -1.59 6.42 71.24 0.46 -1.13 16 19 S -0.21 -4.19 20.01 -56.49 -1.13 -5.32 16 20 C -0.13 -1.09 6.42 71.23 0.46 -0.63 16 21 C 0.53 7.38 8.12 87.65 0.71 8.09 16 22 N -0.83 -3.39 8.87 -173.54 -1.54 -4.93 16 23 O -0.58 -15.59 16.70 -3.02 -0.05 -15.64 16 24 C -0.04 -1.37 9.69 22.25 0.22 -1.15 16 25 C -0.24 -9.73 9.17 22.39 0.21 -9.52 16 26 H 0.27 14.97 8.31 -92.71 -0.77 14.20 16 27 H 0.12 4.47 8.06 -2.91 -0.02 4.44 16 28 H 0.15 3.40 8.06 -2.91 -0.02 3.37 16 29 H 0.07 1.70 8.08 -2.39 -0.02 1.68 16 30 H 0.07 1.67 8.08 -2.39 -0.02 1.65 16 31 H 0.42 5.86 8.46 -92.71 -0.78 5.08 16 32 H 0.14 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.14 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.14 0.29 8.14 -2.39 -0.02 0.27 16 35 H 0.15 0.28 8.14 -2.39 -0.02 0.26 16 36 H 0.42 -1.59 8.83 -92.71 -0.82 -2.41 16 37 H 0.41 1.47 8.93 -92.71 -0.83 0.65 16 38 H 0.14 3.44 8.06 -2.91 -0.02 3.42 16 39 H 0.12 4.92 5.64 -2.91 -0.02 4.90 16 Total: -1.00 -87.41 359.62 0.27 -87.14 By element: Atomic # 1 Polarization: 17.63 SS G_CDS: -1.30 Total: 16.33 kcal Atomic # 6 Polarization: -23.61 SS G_CDS: 4.83 Total: -18.78 kcal Atomic # 7 Polarization: -71.44 SS G_CDS: -3.83 Total: -75.28 kcal Atomic # 8 Polarization: -47.11 SS G_CDS: -0.32 Total: -47.43 kcal Atomic # 14 Polarization: 41.32 SS G_CDS: 2.03 Total: 43.34 kcal Atomic # 16 Polarization: -4.19 SS G_CDS: -1.13 Total: -5.32 kcal Total: -87.41 0.27 -87.14 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771606811.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.050 kcal (2) G-P(sol) polarization free energy of solvation -87.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds