Wall clock time and date at job start Tue Mar 31 2020 14:32:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50691 * 120.00366 * 2 1 4 4 N 1.46898 * 109.47603 * 124.52734 * 3 2 1 5 5 C 1.46901 * 110.99960 * 293.07134 * 4 3 2 6 6 C 1.50700 * 109.47286 * 287.97970 * 5 4 3 7 7 C 1.33351 * 125.19256 * 95.53546 * 6 5 4 8 8 C 1.38471 * 114.92904 * 179.97438 * 7 6 5 9 9 C 1.33503 * 114.88328 * 0.02562 * 8 7 6 10 10 Cl 1.73596 * 125.20703 * 180.02562 * 9 8 7 11 11 S 1.75881 * 125.18461 * 275.23038 * 6 5 4 12 12 C 1.46904 * 111.00055 * 57.02171 * 4 3 2 13 13 C 1.52995 * 109.46767 * 74.69166 * 12 4 3 14 14 H 1.08993 * 109.47726 * 51.98350 * 13 12 4 15 15 C 1.47200 * 109.47122 * 291.97822 * 13 12 4 16 16 N 3.45066 * 137.01140 * 278.16225 * 2 1 3 17 17 C 1.53005 * 109.47108 * 171.98147 * 13 12 4 18 18 C 1.50694 * 109.47166 * 184.99904 * 17 13 12 19 19 H 1.08007 * 120.00495 * 359.97438 * 18 17 13 20 20 C 1.37879 * 119.99826 * 180.02562 * 18 17 13 21 21 N 1.31522 * 119.99892 * 179.97438 * 20 18 17 22 22 Si 1.86800 * 120.00100 * 359.97438 * 20 18 17 23 23 H 1.48494 * 109.46920 * 90.00037 * 22 20 18 24 24 H 1.48503 * 109.47087 * 210.00126 * 22 20 18 25 25 H 1.48494 * 109.46860 * 329.99902 * 22 20 18 26 26 H 1.07996 * 119.99856 * 0.02562 * 1 2 3 27 27 H 1.08006 * 119.99997 * 179.97438 * 1 2 3 28 28 H 1.08007 * 119.99748 * 179.97438 * 2 1 3 29 29 H 1.09001 * 109.47309 * 4.52642 * 3 2 1 30 30 H 1.09004 * 109.47698 * 244.53075 * 3 2 1 31 31 H 1.09001 * 109.47099 * 47.97772 * 5 4 3 32 32 H 1.08998 * 109.47683 * 167.97541 * 5 4 3 33 33 H 1.07998 * 122.53327 * 359.95764 * 7 6 5 34 34 H 1.07993 * 122.55532 * 179.97438 * 8 7 6 35 35 H 1.08996 * 109.47214 * 194.69100 * 12 4 3 36 36 H 1.08998 * 109.46956 * 314.69412 * 12 4 3 37 37 H 1.09003 * 109.46841 * 304.99974 * 17 13 12 38 38 H 1.09007 * 109.47006 * 65.00141 * 17 13 12 39 39 H 0.96997 * 120.00040 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9882 1.3366 1.1410 5 6 2.2540 1.3782 2.4127 6 6 1.6279 2.7378 2.5871 7 6 0.3735 3.0536 2.2629 8 6 0.0189 4.3682 2.5146 9 6 0.9874 5.1199 3.0432 10 17 0.8356 6.7973 3.4638 11 16 2.4379 4.1483 3.2562 12 6 3.9107 0.1939 1.1029 13 6 4.9654 0.4260 0.0192 14 1 5.4251 1.4037 0.1629 15 6 4.3269 0.3741 -1.3061 16 7 3.8341 0.3340 -2.3290 17 6 6.0387 -0.6606 0.1110 18 6 7.1398 -0.3635 -0.8740 19 1 7.0800 0.5124 -1.5030 20 6 8.2232 -1.2106 -0.9729 21 7 9.1840 -0.9516 -1.8329 22 14 8.3264 -2.7260 0.1144 23 1 7.6815 -3.8734 -0.5731 24 1 9.7514 -3.0468 0.3824 25 1 7.6285 -2.4624 1.3984 26 1 -0.5400 0.9353 -0.0004 27 1 -0.5400 -0.9354 -0.0004 28 1 1.8500 -0.9354 0.0004 29 1 1.3581 2.1319 0.0811 30 1 2.6280 1.3987 -0.9278 31 1 1.4738 0.6170 2.4068 32 1 2.9421 1.1867 3.2360 33 1 -0.3138 2.3381 1.8361 34 1 -0.9656 4.7561 2.2990 35 1 4.4010 0.0903 2.0708 36 1 3.3534 -0.7156 0.8786 37 1 6.4497 -0.6808 1.1204 38 1 5.5957 -1.6293 -0.1205 39 1 9.9464 -1.5473 -1.9023 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000073020242.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:32:34 Heat of formation + Delta-G solvation = 85.674873 kcal Electronic energy + Delta-G solvation = -22107.272762 eV Core-core repulsion = 18782.670588 eV Total energy + Delta-G solvation = -3324.602173 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 324.076 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.39093 -37.99408 -36.83995 -35.86119 -34.08889 -33.11434 -32.04324 -30.29639 -27.41353 -26.86919 -24.81437 -23.24304 -22.02742 -21.47556 -19.68918 -19.62085 -17.64433 -16.96507 -16.80987 -16.07060 -15.85546 -15.70912 -14.87772 -14.30037 -14.03798 -13.82765 -13.63001 -13.47460 -13.24852 -13.02419 -12.97296 -12.61061 -12.42096 -11.92638 -11.81628 -11.79446 -11.64911 -11.40466 -11.29332 -11.15396 -11.02144 -10.87878 -10.85804 -10.31613 -9.99208 -9.83856 -9.48661 -9.35568 -8.80515 -8.71595 -8.63462 -8.36355 -6.12212 -4.13043 0.58248 0.92094 1.66693 2.02708 2.12178 2.36520 3.24714 3.31752 3.33079 3.51844 3.56738 3.93284 4.36161 4.56296 4.64492 4.76643 4.93028 4.96995 5.07137 5.16708 5.22274 5.32643 5.37178 5.50963 5.55320 5.68408 5.78707 5.84590 5.87290 5.97582 6.09864 6.13971 6.32620 6.47028 6.52801 6.90551 6.93569 6.96627 7.10612 7.61416 8.31916 8.40697 8.91572 9.47358 11.00905 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.016561 B = 0.002996 C = 0.002762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1690.342889 B = 9344.569800 C =10135.377394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.182 4.182 3 C 0.058 3.942 4 N -0.525 5.525 5 C 0.116 3.884 6 C -0.149 4.149 7 C -0.137 4.137 8 C -0.117 4.117 9 C -0.160 4.160 10 Cl -0.022 7.022 11 S 0.180 5.820 12 C 0.053 3.947 13 C 0.019 3.981 14 H 0.117 0.883 15 C 0.246 3.754 16 N -0.469 5.469 17 C -0.004 4.004 18 C -0.528 4.528 19 H 0.074 0.926 20 C 0.071 3.929 21 N -0.896 5.896 22 Si 0.877 3.123 23 H -0.278 1.278 24 H -0.287 1.287 25 H -0.262 1.262 26 H 0.095 0.905 27 H 0.095 0.905 28 H 0.111 0.889 29 H 0.080 0.920 30 H 0.100 0.900 31 H 0.064 0.936 32 H 0.090 0.910 33 H 0.143 0.857 34 H 0.144 0.856 35 H 0.094 0.906 36 H 0.050 0.950 37 H 0.039 0.961 38 H 0.018 0.982 39 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.176 8.330 14.473 25.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.202 4.202 3 C -0.069 4.069 4 N -0.247 5.247 5 C -0.013 4.013 6 C -0.268 4.268 7 C -0.168 4.168 8 C -0.150 4.150 9 C -0.304 4.304 10 Cl 0.007 6.993 11 S 0.444 5.556 12 C -0.075 4.075 13 C -0.003 4.003 14 H 0.135 0.865 15 C -0.070 4.070 16 N -0.146 5.146 17 C -0.042 4.042 18 C -0.565 4.565 19 H 0.092 0.908 20 C -0.131 4.131 21 N -0.534 5.534 22 Si 0.704 3.296 23 H -0.203 1.203 24 H -0.212 1.212 25 H -0.187 1.187 26 H 0.113 0.887 27 H 0.113 0.887 28 H 0.129 0.871 29 H 0.099 0.901 30 H 0.118 0.882 31 H 0.082 0.918 32 H 0.109 0.891 33 H 0.161 0.839 34 H 0.162 0.838 35 H 0.112 0.888 36 H 0.069 0.931 37 H 0.057 0.943 38 H 0.037 0.963 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -17.985 9.102 13.443 24.229 hybrid contribution -1.540 -1.639 0.195 2.258 sum -19.525 7.463 13.638 24.958 Atomic orbital electron populations 1.23809 0.95810 1.01557 1.01193 1.23661 0.96694 1.00321 0.99514 1.21804 0.95146 0.94332 0.95640 1.62323 1.17961 1.43300 1.01161 1.20626 0.97442 0.90064 0.93145 1.24531 0.97163 0.99561 1.05563 1.19960 0.96317 0.96133 1.04396 1.20118 1.00139 0.93365 1.01371 1.25318 1.00727 0.91326 1.13045 1.98362 1.97482 1.11500 1.91977 1.84563 1.10931 0.99698 1.60442 1.22413 0.93390 0.91505 1.00180 1.19059 0.94102 1.04662 0.82444 0.86546 1.28990 0.91338 0.91906 0.94742 1.81079 1.12002 1.09928 1.11622 1.19636 0.93007 0.92669 0.98936 1.21019 1.03211 1.11573 1.20745 0.90756 1.24994 0.95414 0.97662 0.95034 1.69907 1.09899 1.38055 1.35581 0.86823 0.77454 0.83620 0.81668 1.20340 1.21245 1.18693 0.88707 0.88709 0.87118 0.90129 0.88229 0.91837 0.89126 0.83900 0.83785 0.88780 0.93140 0.94310 0.96333 0.92551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.84 14.32 29.02 0.42 -1.42 16 2 C -0.18 -2.13 7.56 -36.03 -0.27 -2.40 16 3 C 0.06 0.73 5.15 -4.98 -0.03 0.71 16 4 N -0.53 -6.20 4.59 -237.52 -1.09 -7.29 16 5 C 0.12 1.11 5.36 -4.98 -0.03 1.08 16 6 C -0.15 -1.44 5.47 -36.02 -0.20 -1.64 16 7 C -0.14 -1.23 8.95 -41.20 -0.37 -1.60 16 8 C -0.12 -1.06 10.13 -41.15 -0.42 -1.47 16 9 C -0.16 -1.57 7.10 29.08 0.21 -1.37 16 10 Cl -0.02 -0.20 29.29 -51.86 -1.52 -1.72 16 11 S 0.18 1.79 23.33 -107.50 -2.51 -0.72 16 12 C 0.05 0.68 4.49 -3.82 -0.02 0.66 16 13 C 0.02 0.33 2.40 -93.41 -0.22 0.10 16 14 H 0.12 1.96 8.14 -51.93 -0.42 1.54 16 15 C 0.25 4.75 10.90 -20.76 -0.23 4.52 16 16 N -0.47 -9.86 17.62 42.16 0.74 -9.12 16 17 C 0.00 -0.07 3.49 -27.88 -0.10 -0.17 16 18 C -0.53 -13.94 9.15 -34.44 -0.32 -14.26 16 19 H 0.07 2.17 7.84 -52.48 -0.41 1.76 16 20 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 21 N -0.90 -26.82 13.96 55.43 0.77 -26.04 16 22 Si 0.88 20.28 27.47 -169.99 -4.67 15.61 16 23 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 24 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 25 H -0.26 -5.55 6.54 56.52 0.37 -5.18 16 26 H 0.09 0.83 7.55 -52.49 -0.40 0.43 16 27 H 0.09 0.85 8.06 -52.48 -0.42 0.42 16 28 H 0.11 1.39 6.44 -52.48 -0.34 1.06 16 29 H 0.08 0.95 6.13 -51.93 -0.32 0.64 16 30 H 0.10 1.54 4.36 -51.93 -0.23 1.31 16 31 H 0.06 0.56 7.00 -51.93 -0.36 0.20 16 32 H 0.09 0.76 7.69 -51.93 -0.40 0.36 16 33 H 0.14 1.10 7.76 -52.49 -0.41 0.69 16 34 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 35 H 0.09 1.02 7.65 -51.93 -0.40 0.62 16 36 H 0.05 0.63 5.68 -51.93 -0.30 0.33 16 37 H 0.04 0.75 7.19 -51.93 -0.37 0.38 16 38 H 0.02 0.38 7.57 -51.93 -0.39 -0.01 16 39 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 352.37 15.07 5.31 5.31 Total: -1.00 -29.99 352.37 -9.38 -39.36 By element: Atomic # 1 Polarization: 4.74 SS G_CDS: -4.75 Total: -0.02 kcal Atomic # 6 Polarization: -13.71 SS G_CDS: -1.66 Total: -15.37 kcal Atomic # 7 Polarization: -42.88 SS G_CDS: 0.43 Total: -42.45 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -4.67 Total: 15.61 kcal Atomic # 16 Polarization: 1.79 SS G_CDS: -2.51 Total: -0.72 kcal Atomic # 17 Polarization: -0.20 SS G_CDS: -1.52 Total: -1.72 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -29.99 -9.38 -39.36 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073020242.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.039 kcal (2) G-P(sol) polarization free energy of solvation -29.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.364 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds