Wall clock time and date at job start Tue Mar 31 2020 14:32:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50691 * 120.00366 * 2 1 4 4 N 1.46898 * 109.47603 * 124.52734 * 3 2 1 5 5 C 1.46901 * 110.99960 * 293.07134 * 4 3 2 6 6 C 1.50700 * 109.47286 * 287.97970 * 5 4 3 7 7 C 1.33351 * 125.19256 * 95.53546 * 6 5 4 8 8 C 1.38471 * 114.92904 * 179.97438 * 7 6 5 9 9 C 1.33503 * 114.88328 * 0.02562 * 8 7 6 10 10 Cl 1.73596 * 125.20703 * 180.02562 * 9 8 7 11 11 S 1.75881 * 125.18461 * 275.23038 * 6 5 4 12 12 C 1.46904 * 111.00055 * 57.02171 * 4 3 2 13 13 C 1.52995 * 109.46767 * 74.69166 * 12 4 3 14 14 H 1.08993 * 109.47726 * 51.98350 * 13 12 4 15 15 C 1.47200 * 109.47122 * 291.97822 * 13 12 4 16 16 N 3.45066 * 137.01140 * 278.16225 * 2 1 3 17 17 C 1.53005 * 109.47108 * 171.98147 * 13 12 4 18 18 C 1.50694 * 109.47166 * 184.99904 * 17 13 12 19 19 H 1.08007 * 120.00495 * 359.97438 * 18 17 13 20 20 C 1.37879 * 119.99826 * 180.02562 * 18 17 13 21 21 N 1.31522 * 119.99892 * 179.97438 * 20 18 17 22 22 Si 1.86800 * 120.00100 * 359.97438 * 20 18 17 23 23 H 1.48494 * 109.46920 * 90.00037 * 22 20 18 24 24 H 1.48503 * 109.47087 * 210.00126 * 22 20 18 25 25 H 1.48494 * 109.46860 * 329.99902 * 22 20 18 26 26 H 1.07996 * 119.99856 * 0.02562 * 1 2 3 27 27 H 1.08006 * 119.99997 * 179.97438 * 1 2 3 28 28 H 1.08007 * 119.99748 * 179.97438 * 2 1 3 29 29 H 1.09001 * 109.47309 * 4.52642 * 3 2 1 30 30 H 1.09004 * 109.47698 * 244.53075 * 3 2 1 31 31 H 1.09001 * 109.47099 * 47.97772 * 5 4 3 32 32 H 1.08998 * 109.47683 * 167.97541 * 5 4 3 33 33 H 1.07998 * 122.53327 * 359.95764 * 7 6 5 34 34 H 1.07993 * 122.55532 * 179.97438 * 8 7 6 35 35 H 1.08996 * 109.47214 * 194.69100 * 12 4 3 36 36 H 1.08998 * 109.46956 * 314.69412 * 12 4 3 37 37 H 1.09003 * 109.46841 * 304.99974 * 17 13 12 38 38 H 1.09007 * 109.47006 * 65.00141 * 17 13 12 39 39 H 0.96997 * 120.00040 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9882 1.3366 1.1410 5 6 2.2540 1.3782 2.4127 6 6 1.6279 2.7378 2.5871 7 6 0.3735 3.0536 2.2629 8 6 0.0189 4.3682 2.5146 9 6 0.9874 5.1199 3.0432 10 17 0.8356 6.7973 3.4638 11 16 2.4379 4.1483 3.2562 12 6 3.9107 0.1939 1.1029 13 6 4.9654 0.4260 0.0192 14 1 5.4251 1.4037 0.1629 15 6 4.3269 0.3741 -1.3061 16 7 3.8341 0.3340 -2.3290 17 6 6.0387 -0.6606 0.1110 18 6 7.1398 -0.3635 -0.8740 19 1 7.0800 0.5124 -1.5030 20 6 8.2232 -1.2106 -0.9729 21 7 9.1840 -0.9516 -1.8329 22 14 8.3264 -2.7260 0.1144 23 1 7.6815 -3.8734 -0.5731 24 1 9.7514 -3.0468 0.3824 25 1 7.6285 -2.4624 1.3984 26 1 -0.5400 0.9353 -0.0004 27 1 -0.5400 -0.9354 -0.0004 28 1 1.8500 -0.9354 0.0004 29 1 1.3581 2.1319 0.0811 30 1 2.6280 1.3987 -0.9278 31 1 1.4738 0.6170 2.4068 32 1 2.9421 1.1867 3.2360 33 1 -0.3138 2.3381 1.8361 34 1 -0.9656 4.7561 2.2990 35 1 4.4010 0.0903 2.0708 36 1 3.3534 -0.7156 0.8786 37 1 6.4497 -0.6808 1.1204 38 1 5.5957 -1.6293 -0.1205 39 1 9.9464 -1.5473 -1.9023 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000073020242.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:32:33 Heat of formation + Delta-G solvation = 68.590703 kcal Electronic energy + Delta-G solvation = -22108.013587 eV Core-core repulsion = 18782.670588 eV Total energy + Delta-G solvation = -3325.342998 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 324.076 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.33924 -38.83146 -37.68843 -37.06552 -35.66558 -34.30622 -33.54998 -31.29433 -28.89300 -27.68531 -25.92143 -24.19668 -23.21909 -22.85219 -20.57181 -20.36080 -18.85412 -18.36908 -18.25923 -17.05024 -16.74873 -16.63969 -16.05473 -15.73074 -15.14083 -14.90373 -14.64746 -14.50184 -14.29403 -14.24265 -13.99113 -13.87613 -13.76639 -13.40605 -13.18396 -12.68071 -12.56144 -12.46262 -12.40063 -12.27983 -12.18627 -11.97724 -11.82158 -11.69704 -11.57774 -11.39649 -11.29847 -10.71734 -10.33741 -9.54232 -9.44724 -9.22600 -8.22640 -6.28263 -0.13392 0.20976 0.95964 1.31022 1.31428 1.44805 1.46060 1.57209 1.67445 2.00398 2.03303 2.42823 3.03259 3.13793 3.27929 3.83484 3.94524 4.05098 4.10987 4.26717 4.37480 4.46104 4.54338 4.63071 4.65994 4.75490 4.87420 4.89451 4.97320 5.00902 5.09956 5.16565 5.28138 5.41927 5.48898 5.64856 5.65909 5.72339 6.02595 6.11257 6.28759 6.78112 6.84455 7.36066 8.94473 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.016561 B = 0.002996 C = 0.002762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1690.342889 B = 9344.569800 C =10135.377394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.202 4.202 3 C 0.065 3.935 4 N -0.533 5.533 5 C 0.119 3.881 6 C -0.154 4.154 7 C -0.135 4.135 8 C -0.117 4.117 9 C -0.172 4.172 10 Cl -0.022 7.022 11 S 0.160 5.840 12 C 0.063 3.937 13 C 0.024 3.976 14 H 0.114 0.886 15 C 0.256 3.744 16 N -0.507 5.507 17 C -0.001 4.001 18 C -0.529 4.529 19 H 0.026 0.974 20 C 0.001 3.999 21 N -0.956 5.956 22 Si 0.948 3.052 23 H -0.277 1.277 24 H -0.291 1.291 25 H -0.219 1.219 26 H 0.108 0.892 27 H 0.106 0.894 28 H 0.101 0.899 29 H 0.086 0.914 30 H 0.066 0.934 31 H 0.076 0.924 32 H 0.106 0.894 33 H 0.159 0.841 34 H 0.161 0.839 35 H 0.123 0.877 36 H 0.058 0.942 37 H 0.067 0.933 38 H 0.026 0.974 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.327 7.151 17.212 28.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.222 4.222 3 C -0.063 4.063 4 N -0.255 5.255 5 C -0.009 4.009 6 C -0.273 4.273 7 C -0.166 4.166 8 C -0.149 4.149 9 C -0.316 4.316 10 Cl 0.006 6.994 11 S 0.423 5.577 12 C -0.065 4.065 13 C 0.002 3.998 14 H 0.132 0.868 15 C -0.059 4.059 16 N -0.185 5.185 17 C -0.040 4.040 18 C -0.567 4.567 19 H 0.044 0.956 20 C -0.195 4.195 21 N -0.597 5.597 22 Si 0.771 3.229 23 H -0.203 1.203 24 H -0.218 1.218 25 H -0.141 1.141 26 H 0.127 0.873 27 H 0.125 0.875 28 H 0.119 0.881 29 H 0.104 0.896 30 H 0.084 0.916 31 H 0.094 0.906 32 H 0.124 0.876 33 H 0.177 0.823 34 H 0.178 0.822 35 H 0.141 0.859 36 H 0.076 0.924 37 H 0.085 0.915 38 H 0.044 0.956 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -20.170 7.944 16.207 27.067 hybrid contribution -0.941 -1.142 -0.746 1.657 sum -21.112 6.801 15.461 27.037 Atomic orbital electron populations 1.24014 0.95200 1.02788 0.98412 1.23510 0.97273 0.99322 1.02089 1.21612 0.94945 0.95164 0.94539 1.62202 1.18350 1.42926 1.02063 1.20678 0.97952 0.90190 0.92088 1.24603 0.97373 0.99406 1.05918 1.20167 0.96347 0.96317 1.03737 1.20373 1.00662 0.93378 1.00515 1.25439 1.00888 0.91522 1.13765 1.98359 1.97467 1.11507 1.92023 1.84603 1.11613 1.00486 1.60969 1.22312 0.92657 0.92087 0.99494 1.19113 0.94634 1.03358 0.82711 0.86783 1.29537 0.90498 0.90913 0.94994 1.81059 1.13547 1.11047 1.12879 1.19581 0.92061 0.93976 0.98361 1.21409 1.04913 1.09587 1.20834 0.95568 1.26068 0.94969 1.01692 0.96796 1.70100 1.11123 1.40005 1.38469 0.85700 0.77540 0.78462 0.81218 1.20310 1.21767 1.14087 0.87349 0.87527 0.88146 0.89591 0.91571 0.90605 0.87621 0.82313 0.82181 0.85905 0.92399 0.91482 0.95601 0.92734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.78 14.32 67.78 0.97 -1.81 16 2 C -0.20 -4.29 7.56 25.65 0.19 -4.09 16 3 C 0.07 1.54 5.15 85.55 0.44 1.98 16 4 N -0.53 -11.32 4.59 -905.39 -4.16 -15.48 16 5 C 0.12 1.88 5.36 85.56 0.46 2.34 16 6 C -0.15 -2.59 5.47 24.58 0.13 -2.46 16 7 C -0.13 -2.04 8.95 21.22 0.19 -1.85 16 8 C -0.12 -1.84 10.13 21.25 0.22 -1.63 16 9 C -0.17 -3.13 7.10 66.75 0.47 -2.66 16 10 Cl -0.02 -0.39 29.29 -2.72 -0.08 -0.47 16 11 S 0.16 2.95 23.33 -56.49 -1.32 1.63 16 12 C 0.06 1.41 4.49 86.30 0.39 1.80 16 13 C 0.02 0.78 2.40 -12.60 -0.03 0.75 16 14 H 0.11 3.79 8.14 -2.39 -0.02 3.77 16 15 C 0.26 9.93 10.90 89.44 0.97 10.91 16 16 N -0.51 -21.82 17.62 20.01 0.35 -21.47 16 17 C 0.00 -0.03 3.49 29.85 0.10 0.07 16 18 C -0.53 -28.34 9.15 25.60 0.23 -28.11 16 19 H 0.03 1.60 7.84 -2.91 -0.02 1.58 16 20 C 0.00 0.06 5.47 84.65 0.46 0.52 16 21 N -0.96 -59.25 13.96 21.45 0.30 -58.95 16 22 Si 0.95 40.81 27.47 68.60 1.88 42.70 16 23 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 24 H -0.29 -12.70 7.11 99.48 0.71 -11.99 16 25 H -0.22 -7.84 6.54 99.48 0.65 -7.19 16 26 H 0.11 1.51 7.55 -2.91 -0.02 1.49 16 27 H 0.11 1.54 8.06 -2.91 -0.02 1.52 16 28 H 0.10 2.33 6.44 -2.91 -0.02 2.32 16 29 H 0.09 1.88 6.13 -2.39 -0.01 1.86 16 30 H 0.07 2.03 4.36 -2.38 -0.01 2.02 16 31 H 0.08 1.05 7.00 -2.39 -0.02 1.03 16 32 H 0.11 1.36 7.69 -2.39 -0.02 1.34 16 33 H 0.16 1.86 7.76 -2.91 -0.02 1.84 16 34 H 0.16 1.94 8.06 -2.91 -0.02 1.91 16 35 H 0.12 2.09 7.65 -2.39 -0.02 2.07 16 36 H 0.06 1.26 5.68 -2.39 -0.01 1.24 16 37 H 0.07 2.30 7.19 -2.39 -0.02 2.28 16 38 H 0.03 0.99 7.57 -2.38 -0.02 0.97 16 39 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 Total: -1.00 -68.00 352.37 3.21 -64.80 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: 1.01 Total: 11.46 kcal Atomic # 6 Polarization: -29.44 SS G_CDS: 5.21 Total: -24.23 kcal Atomic # 7 Polarization: -92.39 SS G_CDS: -3.51 Total: -95.90 kcal Atomic # 14 Polarization: 40.81 SS G_CDS: 1.88 Total: 42.70 kcal Atomic # 16 Polarization: 2.95 SS G_CDS: -1.32 Total: 1.63 kcal Atomic # 17 Polarization: -0.39 SS G_CDS: -0.08 Total: -0.47 kcal Total: -68.00 3.21 -64.80 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073020242.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.390 kcal (2) G-P(sol) polarization free energy of solvation -68.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.800 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds