Wall clock time and date at job start Tue Mar 31 2020 14:34:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47449 * 2 1 4 4 N 1.46496 * 109.47220 * 184.97837 * 3 2 1 5 5 C 1.36934 * 120.00027 * 284.13890 * 4 3 2 6 6 H 1.07997 * 119.99906 * 147.68194 * 5 4 3 7 7 C 1.38818 * 119.99989 * 327.68151 * 5 4 3 8 8 N 1.31613 * 119.99714 * 154.49423 * 7 5 4 9 9 Si 1.86799 * 119.99899 * 334.49928 * 7 5 4 10 10 H 1.48504 * 109.47183 * 95.37706 * 9 7 5 11 11 H 1.48500 * 109.46837 * 215.37548 * 9 7 5 12 12 H 1.48495 * 109.47242 * 335.37265 * 9 7 5 13 13 S 1.65598 * 120.00097 * 104.14284 * 4 3 2 14 14 O 1.42103 * 106.40357 * 336.45907 * 13 4 3 15 15 O 1.42097 * 106.40401 * 203.53791 * 13 4 3 16 16 C 1.76203 * 107.21825 * 89.99822 * 13 4 3 17 17 C 1.38292 * 119.87490 * 115.02586 * 16 13 4 18 18 C 1.37950 * 120.20954 * 179.97438 * 17 16 13 19 19 C 1.39659 * 119.96338 * 0.02562 * 18 17 16 20 20 C 1.43202 * 120.12332 * 179.97438 * 19 18 17 21 21 N 9.74114 * 112.56759 * 350.03548 * 2 1 3 22 22 C 1.39539 * 119.75122 * 359.75565 * 19 18 17 23 23 C 1.38479 * 119.78568 * 0.47442 * 22 19 18 24 24 O 1.35910 * 119.97958 * 179.79524 * 23 22 19 25 25 C 1.42901 * 117.00282 * 359.72453 * 24 23 22 26 26 H 1.09006 * 109.47058 * 60.00061 * 1 2 3 27 27 H 1.08997 * 109.46781 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.46827 * 300.00351 * 1 2 3 29 29 H 1.09003 * 109.47434 * 239.99566 * 2 1 3 30 30 H 1.08996 * 109.47207 * 119.99957 * 2 1 3 31 31 H 1.08996 * 109.47228 * 64.97340 * 3 2 1 32 32 H 1.09009 * 109.46794 * 304.97994 * 3 2 1 33 33 H 0.97008 * 120.00118 * 179.97438 * 8 7 5 34 34 H 1.07999 * 119.89446 * 359.96902 * 17 16 13 35 35 H 1.08002 * 120.01805 * 180.02562 * 18 17 16 36 36 H 1.07997 * 120.10546 * 180.27572 * 22 19 18 37 37 H 1.08992 * 109.47263 * 180.02562 * 25 24 23 38 38 H 1.09006 * 109.46520 * 59.99816 * 25 24 23 39 39 H 1.08995 * 109.47282 * 300.00483 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5002 1.4441 -0.1199 5 6 4.2763 1.1221 0.9614 6 1 5.2227 0.6223 0.8170 7 6 3.8465 1.4380 2.2430 8 7 4.2751 0.7381 3.2719 9 14 2.6599 2.8563 2.5071 10 1 1.2702 2.3357 2.5606 11 1 2.9821 3.5396 3.7856 12 1 2.7843 3.8212 1.3852 13 16 4.2120 1.8356 -1.5629 14 8 3.2450 1.5755 -2.5710 15 8 5.5011 1.2377 -1.5496 16 6 4.4719 3.5783 -1.5605 17 6 5.7593 4.0829 -1.5785 18 6 5.9707 5.4461 -1.5773 19 6 4.8821 6.3207 -1.5573 20 6 5.0976 7.7364 -1.5554 21 7 5.2684 8.8595 -1.5565 22 6 3.5836 5.8099 -1.5437 23 6 3.3834 4.4397 -1.5403 24 8 2.1205 3.9379 -1.5229 25 6 1.0476 4.8817 -1.5028 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.8934 -0.5139 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.7514 1.9299 0.9311 32 1 1.6057 1.9814 -0.8421 33 1 3.9751 0.9591 4.1676 34 1 6.6020 3.4075 -1.5935 35 1 6.9775 5.8368 -1.5918 36 1 2.7376 6.4811 -1.5327 37 1 0.0962 4.3500 -1.4898 38 1 1.1006 5.5109 -2.3913 39 1 1.1278 5.5040 -0.6115 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000185647863.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:59 Heat of formation + Delta-G solvation = -39.154385 kcal Electronic energy + Delta-G solvation = -26601.868952 eV Core-core repulsion = 22831.144611 eV Total energy + Delta-G solvation = -3770.724341 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.098 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.18289 -37.88681 -36.65237 -36.29438 -35.82039 -34.51279 -32.93067 -31.57896 -31.50892 -30.22593 -27.44273 -26.04677 -24.27790 -23.98633 -22.26004 -21.14506 -19.49321 -18.53443 -17.58278 -16.93694 -16.90571 -16.24885 -16.00693 -15.85872 -15.52353 -14.32988 -14.24642 -14.15327 -14.02998 -13.91737 -13.79119 -13.37703 -13.08441 -12.84217 -12.74888 -12.48170 -12.44759 -12.08182 -11.88108 -11.69917 -11.48015 -11.09981 -11.02383 -11.00698 -10.87806 -10.78789 -10.61664 -10.44290 -10.19742 -9.98997 -9.84338 -9.16630 -9.03803 -8.38783 -8.22181 -6.81564 -4.15402 0.50340 1.41427 1.57835 2.48359 2.78457 2.92539 3.08561 3.10769 3.20905 3.70330 3.72977 3.89992 4.14267 4.59593 4.71301 4.87904 4.92802 4.97361 5.11554 5.22243 5.44248 5.55260 5.58658 5.62066 5.68492 5.68923 5.84456 5.95148 6.02774 6.17923 6.24546 6.30293 6.35813 6.43549 6.68749 6.74339 6.83317 7.10914 7.23558 7.29180 7.31706 8.13064 8.73372 8.83481 10.24329 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.013108 B = 0.005966 C = 0.005839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2135.659010 B = 4691.943152 C = 4794.281382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.130 4.130 3 C 0.119 3.881 4 N -0.815 5.815 5 C -0.243 4.243 6 H 0.128 0.872 7 C 0.068 3.932 8 N -0.815 5.815 9 Si 0.877 3.123 10 H -0.266 1.266 11 H -0.288 1.288 12 H -0.257 1.257 13 S 2.530 3.470 14 O -0.985 6.985 15 O -0.976 6.976 16 C -0.659 4.659 17 C 0.005 3.995 18 C -0.130 4.130 19 C 0.031 3.969 20 C 0.261 3.739 21 N -0.419 5.419 22 C -0.186 4.186 23 C 0.212 3.788 24 O -0.299 6.299 25 C 0.020 3.980 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.049 0.951 29 H 0.066 0.934 30 H 0.076 0.924 31 H 0.046 0.954 32 H 0.089 0.911 33 H 0.283 0.717 34 H 0.155 0.845 35 H 0.136 0.864 36 H 0.137 0.863 37 H 0.107 0.893 38 H 0.059 0.941 39 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.983 5.640 -4.357 9.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.170 4.170 3 C -0.006 4.006 4 N -0.638 5.638 5 C -0.393 4.393 6 H 0.146 0.854 7 C -0.148 4.148 8 N -0.451 5.451 9 Si 0.705 3.295 10 H -0.193 1.193 11 H -0.215 1.215 12 H -0.181 1.181 13 S 2.630 3.370 14 O -0.975 6.975 15 O -0.966 6.966 16 C -0.736 4.736 17 C -0.014 4.014 18 C -0.151 4.151 19 C 0.028 3.972 20 C -0.055 4.055 21 N -0.094 5.094 22 C -0.208 4.208 23 C 0.165 3.835 24 O -0.211 6.211 25 C -0.074 4.074 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.068 0.932 29 H 0.085 0.915 30 H 0.094 0.906 31 H 0.064 0.936 32 H 0.107 0.893 33 H 0.093 0.907 34 H 0.173 0.827 35 H 0.154 0.846 36 H 0.155 0.845 37 H 0.125 0.875 38 H 0.078 0.922 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -5.553 6.770 -5.191 10.179 hybrid contribution -0.664 1.612 0.669 1.867 sum -6.217 8.382 -4.523 11.374 Atomic orbital electron populations 1.21736 0.96445 1.01267 1.01249 1.21769 0.94419 0.97333 1.03439 1.21490 0.80406 0.97399 1.01308 1.54228 1.10665 1.69148 1.29785 1.19484 1.06863 1.29884 0.83050 0.85427 1.25743 0.97157 0.96538 0.95404 1.69851 1.40299 1.34819 1.00126 0.86922 0.80780 0.83508 0.78309 1.19298 1.21534 1.18092 1.11708 0.73658 0.74721 0.76957 1.93381 1.60576 1.84328 1.59196 1.93366 1.41101 1.74855 1.87246 1.31978 0.95973 1.32542 1.13079 1.20805 0.95604 0.94773 0.90242 1.21182 0.97799 0.93194 1.02922 1.15804 0.94268 0.84268 1.02905 1.25745 0.93434 0.92649 0.93640 1.81221 1.07745 1.11832 1.08636 1.21159 0.96513 0.94563 1.08594 1.18106 0.84263 0.90665 0.90494 1.86230 1.12067 1.35425 1.87381 1.23180 0.89062 0.93772 1.01420 0.92862 0.92842 0.93211 0.91511 0.90559 0.93604 0.89331 0.90666 0.82723 0.84575 0.84520 0.87511 0.92234 0.92451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.14 9.91 37.16 0.37 -1.78 16 2 C -0.13 -2.35 6.08 -26.73 -0.16 -2.52 16 3 C 0.12 2.36 4.20 -4.04 -0.02 2.34 16 4 N -0.81 -18.00 2.60 -59.91 -0.16 -18.16 16 5 C -0.24 -5.85 9.46 -15.06 -0.14 -5.99 16 6 H 0.13 3.32 7.51 -52.49 -0.39 2.93 16 7 C 0.07 1.62 5.30 -17.43 -0.09 1.53 16 8 N -0.82 -20.12 13.97 55.49 0.78 -19.35 16 9 Si 0.88 18.25 25.01 -169.99 -4.25 14.00 16 10 H -0.27 -5.23 6.71 56.52 0.38 -4.85 16 11 H -0.29 -6.06 7.11 56.52 0.40 -5.66 16 12 H -0.26 -5.20 7.11 56.52 0.40 -4.79 16 13 S 2.53 55.68 5.19 -107.50 -0.56 55.12 16 14 O -0.99 -22.70 16.08 -62.60 -1.01 -23.71 16 15 O -0.98 -23.48 15.83 -57.17 -0.90 -24.38 16 16 C -0.66 -12.55 5.93 -39.35 -0.23 -12.78 16 17 C 0.00 0.08 9.53 -39.67 -0.38 -0.30 16 18 C -0.13 -1.81 9.75 -39.16 -0.38 -2.20 16 19 C 0.03 0.44 5.73 -106.95 -0.61 -0.17 16 20 C 0.26 3.63 15.33 -22.47 -0.34 3.29 16 21 N -0.42 -6.38 18.54 41.84 0.78 -5.60 16 22 C -0.19 -2.69 8.74 -39.01 -0.34 -3.03 16 23 C 0.21 3.66 6.63 -39.28 -0.26 3.40 16 24 O -0.30 -4.92 6.59 -29.59 -0.20 -5.12 16 25 C 0.02 0.23 9.81 101.05 0.99 1.22 16 26 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 28 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 29 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 30 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 31 H 0.05 0.91 2.49 -51.93 -0.13 0.78 16 32 H 0.09 1.64 5.02 -51.92 -0.26 1.38 16 33 H 0.28 6.44 8.31 -40.82 -0.34 6.10 16 34 H 0.16 2.42 7.32 -52.49 -0.38 2.04 16 35 H 0.14 1.49 8.06 -52.49 -0.42 1.07 16 36 H 0.14 1.57 6.29 -52.49 -0.33 1.24 16 37 H 0.11 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.06 0.54 7.65 -51.93 -0.40 0.14 16 39 H 0.06 0.57 7.67 -51.93 -0.40 0.17 16 LS Contribution 340.30 15.07 5.13 5.13 Total: -1.00 -28.96 340.30 -6.41 -35.36 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: -4.41 Total: 3.69 kcal Atomic # 6 Polarization: -15.38 SS G_CDS: -1.61 Total: -16.99 kcal Atomic # 7 Polarization: -44.50 SS G_CDS: 1.39 Total: -43.11 kcal Atomic # 8 Polarization: -51.10 SS G_CDS: -2.11 Total: -53.21 kcal Atomic # 14 Polarization: 18.25 SS G_CDS: -4.25 Total: 14.00 kcal Atomic # 16 Polarization: 55.68 SS G_CDS: -0.56 Total: 55.12 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -28.96 -6.41 -35.36 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185647863.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.791 kcal (2) G-P(sol) polarization free energy of solvation -28.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds