Wall clock time and date at job start Tue Mar 31 2020 14:34:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47449 * 2 1 4 4 N 1.46496 * 109.47220 * 184.97837 * 3 2 1 5 5 C 1.36934 * 120.00027 * 284.13890 * 4 3 2 6 6 H 1.07997 * 119.99906 * 147.68194 * 5 4 3 7 7 C 1.38818 * 119.99989 * 327.68151 * 5 4 3 8 8 N 1.31613 * 119.99714 * 154.49423 * 7 5 4 9 9 Si 1.86799 * 119.99899 * 334.49928 * 7 5 4 10 10 H 1.48504 * 109.47183 * 95.37706 * 9 7 5 11 11 H 1.48500 * 109.46837 * 215.37548 * 9 7 5 12 12 H 1.48495 * 109.47242 * 335.37265 * 9 7 5 13 13 S 1.65598 * 120.00097 * 104.14284 * 4 3 2 14 14 O 1.42103 * 106.40357 * 336.45907 * 13 4 3 15 15 O 1.42097 * 106.40401 * 203.53791 * 13 4 3 16 16 C 1.76203 * 107.21825 * 89.99822 * 13 4 3 17 17 C 1.38292 * 119.87490 * 115.02586 * 16 13 4 18 18 C 1.37950 * 120.20954 * 179.97438 * 17 16 13 19 19 C 1.39659 * 119.96338 * 0.02562 * 18 17 16 20 20 C 1.43202 * 120.12332 * 179.97438 * 19 18 17 21 21 N 9.74114 * 112.56759 * 350.03548 * 2 1 3 22 22 C 1.39539 * 119.75122 * 359.75565 * 19 18 17 23 23 C 1.38479 * 119.78568 * 0.47442 * 22 19 18 24 24 O 1.35910 * 119.97958 * 179.79524 * 23 22 19 25 25 C 1.42901 * 117.00282 * 359.72453 * 24 23 22 26 26 H 1.09006 * 109.47058 * 60.00061 * 1 2 3 27 27 H 1.08997 * 109.46781 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.46827 * 300.00351 * 1 2 3 29 29 H 1.09003 * 109.47434 * 239.99566 * 2 1 3 30 30 H 1.08996 * 109.47207 * 119.99957 * 2 1 3 31 31 H 1.08996 * 109.47228 * 64.97340 * 3 2 1 32 32 H 1.09009 * 109.46794 * 304.97994 * 3 2 1 33 33 H 0.97008 * 120.00118 * 179.97438 * 8 7 5 34 34 H 1.07999 * 119.89446 * 359.96902 * 17 16 13 35 35 H 1.08002 * 120.01805 * 180.02562 * 18 17 16 36 36 H 1.07997 * 120.10546 * 180.27572 * 22 19 18 37 37 H 1.08992 * 109.47263 * 180.02562 * 25 24 23 38 38 H 1.09006 * 109.46520 * 59.99816 * 25 24 23 39 39 H 1.08995 * 109.47282 * 300.00483 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5002 1.4441 -0.1199 5 6 4.2763 1.1221 0.9614 6 1 5.2227 0.6223 0.8170 7 6 3.8465 1.4380 2.2430 8 7 4.2751 0.7381 3.2719 9 14 2.6599 2.8563 2.5071 10 1 1.2702 2.3357 2.5606 11 1 2.9821 3.5396 3.7856 12 1 2.7843 3.8212 1.3852 13 16 4.2120 1.8356 -1.5629 14 8 3.2450 1.5755 -2.5710 15 8 5.5011 1.2377 -1.5496 16 6 4.4719 3.5783 -1.5605 17 6 5.7593 4.0829 -1.5785 18 6 5.9707 5.4461 -1.5773 19 6 4.8821 6.3207 -1.5573 20 6 5.0976 7.7364 -1.5554 21 7 5.2684 8.8595 -1.5565 22 6 3.5836 5.8099 -1.5437 23 6 3.3834 4.4397 -1.5403 24 8 2.1205 3.9379 -1.5229 25 6 1.0476 4.8817 -1.5028 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.8934 -0.5139 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.7514 1.9299 0.9311 32 1 1.6057 1.9814 -0.8421 33 1 3.9751 0.9591 4.1676 34 1 6.6020 3.4075 -1.5935 35 1 6.9775 5.8368 -1.5918 36 1 2.7376 6.4811 -1.5327 37 1 0.0962 4.3500 -1.4898 38 1 1.1006 5.5109 -2.3913 39 1 1.1278 5.5040 -0.6115 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000185647863.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:57 Heat of formation + Delta-G solvation = -58.019838 kcal Electronic energy + Delta-G solvation = -26602.687020 eV Core-core repulsion = 22831.144611 eV Total energy + Delta-G solvation = -3771.542408 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.098 amu Computer time = 1.78 seconds Orbital eigenvalues (eV) -41.38670 -39.08031 -38.24626 -37.80184 -37.41032 -36.45269 -34.50768 -33.13406 -32.80355 -31.41313 -28.37174 -27.56588 -25.77842 -25.48549 -23.44679 -22.58083 -20.66545 -20.26582 -19.22924 -18.62196 -18.25028 -17.72843 -17.45393 -17.18376 -16.75968 -15.87554 -15.64311 -15.56475 -15.18659 -15.15953 -15.03659 -14.87384 -14.72838 -14.27781 -14.01803 -13.75975 -13.60483 -13.53612 -13.29940 -12.87658 -12.78370 -12.69554 -12.61914 -12.61671 -12.38298 -12.21561 -12.09549 -11.99023 -11.84371 -11.55387 -11.40594 -10.69424 -10.45681 -9.99785 -9.52213 -8.53389 -6.00091 -0.77314 -0.14921 0.20917 1.27675 1.36617 1.40216 1.48551 1.57237 2.11593 2.22905 2.36291 2.52615 2.61556 2.86282 3.12763 3.47828 3.77867 3.92418 4.06412 4.11929 4.26819 4.31869 4.38718 4.38993 4.50202 4.53693 4.65380 4.70055 4.72244 4.83057 4.98596 5.00243 5.02170 5.21731 5.30494 5.38834 5.47711 5.61358 5.66064 6.10985 6.17632 6.28446 6.99131 7.09188 8.58399 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.013108 B = 0.005966 C = 0.005839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2135.659010 B = 4691.943152 C = 4794.281382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.134 4.134 3 C 0.112 3.888 4 N -0.834 5.834 5 C -0.281 4.281 6 H 0.085 0.915 7 C 0.037 3.963 8 N -0.873 5.873 9 Si 0.919 3.081 10 H -0.247 1.247 11 H -0.294 1.294 12 H -0.244 1.244 13 S 2.588 3.412 14 O -0.994 6.994 15 O -1.003 7.003 16 C -0.694 4.694 17 C -0.003 4.003 18 C -0.120 4.120 19 C 0.047 3.953 20 C 0.280 3.720 21 N -0.433 5.433 22 C -0.177 4.177 23 C 0.207 3.793 24 O -0.324 6.324 25 C 0.003 3.997 26 H 0.068 0.932 27 H 0.069 0.931 28 H 0.057 0.943 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.050 0.950 32 H 0.103 0.897 33 H 0.284 0.716 34 H 0.156 0.844 35 H 0.171 0.829 36 H 0.173 0.827 37 H 0.128 0.872 38 H 0.082 0.918 39 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.806 9.029 -6.067 13.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.174 4.174 3 C -0.012 4.012 4 N -0.661 5.661 5 C -0.424 4.424 6 H 0.103 0.897 7 C -0.174 4.174 8 N -0.510 5.510 9 Si 0.744 3.256 10 H -0.173 1.173 11 H -0.221 1.221 12 H -0.168 1.168 13 S 2.689 3.311 14 O -0.984 6.984 15 O -0.993 6.993 16 C -0.778 4.778 17 C -0.022 4.022 18 C -0.141 4.141 19 C 0.043 3.957 20 C -0.035 4.035 21 N -0.108 5.108 22 C -0.198 4.198 23 C 0.159 3.841 24 O -0.237 6.237 25 C -0.091 4.091 26 H 0.087 0.913 27 H 0.088 0.912 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.067 0.933 32 H 0.121 0.879 33 H 0.094 0.906 34 H 0.173 0.827 35 H 0.188 0.812 36 H 0.190 0.810 37 H 0.146 0.854 38 H 0.100 0.900 39 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -7.399 10.067 -6.800 14.224 hybrid contribution -0.063 0.776 0.789 1.108 sum -7.461 10.843 -6.011 14.470 Atomic orbital electron populations 1.21711 0.93164 1.02819 1.02388 1.21799 0.97341 0.96386 1.01850 1.21732 0.79215 0.98345 1.01940 1.53635 1.11548 1.72584 1.28318 1.18847 1.05921 1.33388 0.84239 0.89726 1.26092 0.98694 0.97882 0.94686 1.69936 1.43748 1.36738 1.00580 0.86261 0.80073 0.81228 0.78053 1.17299 1.22147 1.16783 1.07756 0.72701 0.75269 0.75410 1.93393 1.61041 1.85245 1.58719 1.93365 1.42183 1.76263 1.87494 1.31244 0.98415 1.29779 1.18384 1.20928 0.94666 0.96358 0.90263 1.21437 0.99634 0.91763 1.01263 1.15884 0.94332 0.84309 1.01180 1.25428 0.92871 0.92111 0.93104 1.81276 1.08282 1.12336 1.08942 1.21458 0.97829 0.93739 1.06792 1.18186 0.84281 0.91472 0.90169 1.86185 1.12538 1.37848 1.87112 1.23658 0.88132 0.94023 1.03245 0.91278 0.91218 0.92418 0.92622 0.92730 0.93279 0.87903 0.90627 0.82671 0.81169 0.80992 0.85374 0.89957 0.90975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 37. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.86 9.91 71.98 0.71 -3.15 16 2 C -0.13 -4.91 6.08 30.59 0.19 -4.72 16 3 C 0.11 4.40 4.20 86.38 0.36 4.76 16 4 N -0.83 -37.78 2.60 -343.46 -0.89 -38.68 16 5 C -0.28 -14.41 9.46 84.04 0.79 -13.62 16 6 H 0.09 4.88 7.51 -2.91 -0.02 4.86 16 7 C 0.04 1.87 5.30 84.86 0.45 2.32 16 8 N -0.87 -46.19 13.97 21.65 0.30 -45.89 16 9 Si 0.92 37.53 25.01 68.60 1.72 39.24 16 10 H -0.25 -9.20 6.71 99.48 0.67 -8.53 16 11 H -0.29 -12.11 7.11 99.48 0.71 -11.40 16 12 H -0.24 -9.32 7.11 99.48 0.71 -8.62 16 13 S 2.59 114.45 5.19 -56.49 -0.29 114.16 16 14 O -0.99 -45.07 16.08 -122.81 -1.97 -47.05 16 15 O -1.00 -49.73 15.83 -128.00 -2.03 -51.75 16 16 C -0.69 -25.35 5.93 22.42 0.13 -25.22 16 17 C 0.00 -0.10 9.53 22.21 0.21 0.12 16 18 C -0.12 -2.91 9.75 22.54 0.22 -2.69 16 19 C 0.05 1.11 5.73 -21.38 -0.12 0.98 16 20 C 0.28 6.54 15.33 88.33 1.35 7.90 16 21 N -0.43 -11.47 18.54 19.00 0.35 -11.12 16 22 C -0.18 -4.28 8.74 22.64 0.20 -4.08 16 23 C 0.21 6.48 6.63 22.47 0.15 6.63 16 24 O -0.32 -9.59 6.59 -82.85 -0.55 -10.14 16 25 C 0.00 0.05 9.81 113.37 1.11 1.16 16 26 H 0.07 1.64 8.14 -2.38 -0.02 1.62 16 27 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 28 H 0.06 1.46 8.14 -2.39 -0.02 1.45 16 29 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 30 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 31 H 0.05 1.89 2.49 -2.39 -0.01 1.89 16 32 H 0.10 3.65 5.02 -2.38 -0.01 3.64 16 33 H 0.28 13.82 8.31 -92.70 -0.77 13.05 16 34 H 0.16 4.76 7.32 -2.91 -0.02 4.74 16 35 H 0.17 2.96 8.06 -2.91 -0.02 2.94 16 36 H 0.17 2.91 6.29 -2.91 -0.02 2.89 16 37 H 0.13 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.08 1.06 7.65 -2.38 -0.02 1.04 16 39 H 0.07 1.06 7.67 -2.39 -0.02 1.04 16 Total: -1.00 -66.13 340.30 3.45 -62.68 By element: Atomic # 1 Polarization: 17.10 SS G_CDS: 1.05 Total: 18.15 kcal Atomic # 6 Polarization: -35.37 SS G_CDS: 5.76 Total: -29.61 kcal Atomic # 7 Polarization: -95.44 SS G_CDS: -0.24 Total: -95.68 kcal Atomic # 8 Polarization: -104.39 SS G_CDS: -4.55 Total: -108.94 kcal Atomic # 14 Polarization: 37.53 SS G_CDS: 1.72 Total: 39.24 kcal Atomic # 16 Polarization: 114.45 SS G_CDS: -0.29 Total: 114.16 kcal Total: -66.13 3.45 -62.68 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185647863.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.656 kcal (2) G-P(sol) polarization free energy of solvation -66.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.78 seconds