Wall clock time and date at job start Tue Mar 31 2020 14:12:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47134 * 2 1 4 4 N 1.46502 * 109.47457 * 240.00021 * 2 1 3 5 5 C 1.34781 * 119.99940 * 65.56813 * 4 2 1 6 6 O 1.21282 * 119.99852 * 0.02562 * 5 4 2 7 7 C 1.50698 * 120.00404 * 180.02562 * 5 4 2 8 8 S 1.80992 * 109.47461 * 180.02562 * 7 5 4 9 9 C 1.76200 * 100.00068 * 180.02562 * 8 7 5 10 10 H 1.07996 * 119.99717 * 359.97438 * 9 8 7 11 11 C 1.38802 * 119.99990 * 179.97438 * 9 8 7 12 12 N 1.31624 * 120.00268 * 180.02562 * 11 9 8 13 13 Si 1.86806 * 119.99788 * 359.97438 * 11 9 8 14 14 H 1.48507 * 109.46926 * 90.00264 * 13 11 9 15 15 H 1.48505 * 109.46839 * 209.99564 * 13 11 9 16 16 H 1.48495 * 109.47180 * 330.00076 * 13 11 9 17 17 C 1.50695 * 109.47160 * 120.00144 * 2 1 3 18 18 C 1.38258 * 120.00059 * 125.21940 * 17 2 1 19 19 C 1.38218 * 119.99723 * 179.72736 * 18 17 2 20 20 C 1.38251 * 120.00194 * 0.27426 * 19 18 17 21 21 C 1.38216 * 120.00200 * 359.97438 * 20 19 18 22 22 C 1.38214 * 119.99927 * 305.41171 * 17 2 1 23 23 N 1.48012 * 120.00173 * 0.04062 * 22 17 2 24 24 O 1.21802 * 119.99961 * 173.39685 * 23 22 17 25 25 O 1.21796 * 119.99949 * 353.39443 * 23 22 17 26 26 H 1.08999 * 109.47493 * 269.48383 * 1 2 3 27 27 H 1.08998 * 109.47251 * 29.49111 * 1 2 3 28 28 H 1.09009 * 109.46924 * 149.48460 * 1 2 3 29 29 H 1.08992 * 109.47403 * 205.68999 * 3 2 1 30 30 H 1.08995 * 109.47366 * 325.69225 * 3 2 1 31 31 H 1.09002 * 109.46722 * 85.68939 * 3 2 1 32 32 H 0.96996 * 120.00206 * 245.57013 * 4 2 1 33 33 H 1.09000 * 109.46757 * 300.00036 * 7 5 4 34 34 H 1.08997 * 109.47197 * 59.99713 * 7 5 4 35 35 H 0.96993 * 120.00191 * 180.02562 * 12 11 9 36 36 H 1.08003 * 120.00243 * 359.97438 * 18 17 2 37 37 H 1.08002 * 119.99487 * 180.25144 * 19 18 17 38 38 H 1.08001 * 120.00024 * 179.97438 * 20 19 18 39 39 H 1.07993 * 120.00071 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 1.7879 -0.1684 -2.4171 6 8 1.1765 0.8735 -2.5255 7 6 2.2897 -0.8790 -3.6477 8 16 1.8262 0.0649 -5.1207 9 6 2.5173 -0.9638 -6.3733 10 1 3.0373 -1.8704 -6.1014 11 6 2.3933 -0.6089 -7.7094 12 7 2.9091 -1.3776 -8.6452 13 14 1.4931 0.9590 -8.1797 14 1 2.4568 2.0880 -8.2264 15 1 0.8659 0.7881 -9.5149 16 1 0.4414 1.2472 -7.1718 17 6 2.0323 -0.7104 1.2304 18 6 2.9137 -1.7683 1.1064 19 6 3.3788 -2.4162 2.2353 20 6 2.9582 -2.0101 3.4880 21 6 2.0730 -0.9559 3.6118 22 6 1.6087 -0.3070 2.4826 23 7 0.6611 0.8223 2.6152 24 8 0.1946 1.1011 3.7052 25 8 0.3478 1.4727 1.6342 26 1 -0.3634 -0.0093 1.0276 27 1 -0.3634 0.8945 -0.5059 28 1 -0.3633 -0.8854 -0.5219 29 1 3.0341 1.4764 -0.4455 30 1 1.3608 2.0680 -0.5792 31 1 2.0882 1.8107 1.0248 32 1 2.5076 -1.5236 -1.1095 33 1 3.3751 -0.9665 -3.5993 34 1 1.8470 -1.8736 -3.6988 35 1 2.8227 -1.1294 -9.5788 36 1 3.2420 -2.0859 0.1277 37 1 4.0706 -3.2400 2.1385 38 1 3.3213 -2.5167 4.3701 39 1 1.7442 -0.6389 4.5904 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345804745.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:14 Heat of formation + Delta-G solvation = 34.843649 kcal Electronic energy + Delta-G solvation = -25241.045032 eV Core-core repulsion = 21473.529487 eV Total energy + Delta-G solvation = -3767.515545 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.098 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.82132 -40.56411 -39.23975 -37.28137 -35.78932 -32.92955 -32.46338 -31.90645 -30.89222 -28.77166 -27.46540 -26.81653 -25.63866 -24.09436 -23.18967 -21.29490 -19.94558 -19.46105 -18.82843 -18.05332 -18.00027 -17.13125 -16.41695 -16.01060 -15.48722 -15.20071 -15.07270 -14.96216 -14.25548 -14.10314 -13.97085 -13.45707 -13.17526 -13.10340 -12.83418 -12.79069 -12.65561 -12.13230 -12.10185 -11.66449 -11.28466 -11.24794 -11.17337 -11.02087 -10.77580 -10.63318 -10.38440 -10.12039 -9.87294 -9.76128 -9.44839 -9.09094 -9.01430 -8.52638 -6.94102 -6.31279 -4.03159 -0.49623 0.38709 1.02043 1.14226 2.65944 2.75460 2.92830 3.17886 3.32259 3.49671 3.57429 3.68479 3.86396 4.12036 4.31289 4.35379 4.44705 4.55627 4.68056 4.85273 4.98088 5.02846 5.08073 5.20588 5.23872 5.38863 5.46766 5.53118 5.67060 5.70514 5.71278 5.82963 5.91879 5.95096 6.16893 6.32860 6.39763 6.48102 7.46179 7.48888 7.91671 8.38669 8.43770 9.14983 10.77957 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.025618 B = 0.002975 C = 0.002717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.701126 B = 9409.477345 C =10301.174135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.213 3.787 3 C -0.136 4.136 4 N -0.737 5.737 5 C 0.534 3.466 6 O -0.503 6.503 7 C -0.125 4.125 8 S -0.137 6.137 9 C -0.523 4.523 10 H 0.088 0.912 11 C 0.096 3.904 12 N -0.881 5.881 13 Si 0.856 3.144 14 H -0.267 1.267 15 H -0.274 1.274 16 H -0.234 1.234 17 C -0.012 4.012 18 C -0.124 4.124 19 C -0.058 4.058 20 C -0.124 4.124 21 C -0.050 4.050 22 C -0.036 4.036 23 N 0.016 4.984 24 O -0.186 6.186 25 O -0.113 6.113 26 H 0.057 0.943 27 H 0.090 0.910 28 H 0.051 0.949 29 H 0.052 0.948 30 H 0.093 0.907 31 H 0.058 0.942 32 H 0.395 0.605 33 H 0.096 0.904 34 H 0.097 0.903 35 H 0.271 0.729 36 H 0.148 0.852 37 H 0.146 0.854 38 H 0.148 0.852 39 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.470 -3.514 26.647 26.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.127 3.873 3 C -0.194 4.194 4 N -0.396 5.396 5 C 0.320 3.680 6 O -0.376 6.376 7 C -0.275 4.275 8 S 0.090 5.910 9 C -0.670 4.670 10 H 0.106 0.894 11 C -0.113 4.113 12 N -0.517 5.517 13 Si 0.681 3.319 14 H -0.192 1.192 15 H -0.199 1.199 16 H -0.158 1.158 17 C -0.014 4.014 18 C -0.143 4.143 19 C -0.076 4.076 20 C -0.143 4.143 21 C -0.069 4.069 22 C -0.119 4.119 23 N 0.529 4.471 24 O -0.390 6.390 25 O -0.332 6.332 26 H 0.075 0.925 27 H 0.109 0.891 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.112 0.888 31 H 0.077 0.923 32 H 0.233 0.767 33 H 0.114 0.886 34 H 0.115 0.885 35 H 0.081 0.919 36 H 0.165 0.835 37 H 0.164 0.836 38 H 0.166 0.834 39 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 0.906 -2.332 26.277 26.396 hybrid contribution 0.555 -0.961 -0.223 1.132 sum 1.461 -3.293 26.054 26.302 Atomic orbital electron populations 1.22559 0.91920 1.03741 1.01704 1.19211 0.95195 0.92450 0.80453 1.22333 1.01651 0.93261 1.02114 1.46458 1.60472 1.27533 1.05098 1.20221 0.79022 0.85265 0.83482 1.90701 1.38601 1.22342 1.85907 1.23286 1.04528 1.03539 0.96195 1.84817 1.75179 1.34531 0.96521 1.22316 1.41543 1.11203 0.91979 0.89440 1.24712 0.94342 0.96993 0.95238 1.69930 1.43534 1.37542 1.00710 0.86740 0.81945 0.83411 0.79794 1.19184 1.19937 1.15835 1.20021 0.93871 0.94501 0.92988 1.21106 0.97426 0.95283 1.00447 1.21647 0.96255 0.97772 0.91938 1.21248 0.97615 0.96626 0.98776 1.21085 0.94229 0.93540 0.98065 1.20790 1.00739 0.94598 0.95778 1.43472 1.01116 1.02115 1.00396 1.94528 1.56328 1.73724 1.14450 1.94642 1.61879 1.48795 1.27926 0.92464 0.89115 0.93023 0.92921 0.88802 0.92300 0.76750 0.88577 0.88518 0.91914 0.83456 0.83605 0.83429 0.82795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 6.80 37.16 0.25 -1.62 16 2 C 0.21 2.58 0.77 -132.97 -0.10 2.48 16 3 C -0.14 -1.81 6.58 37.16 0.24 -1.57 16 4 N -0.74 -9.01 4.86 -48.69 -0.24 -9.25 16 5 C 0.53 8.95 7.28 -10.98 -0.08 8.87 16 6 O -0.50 -10.12 13.15 5.56 0.07 -10.04 16 7 C -0.12 -2.30 6.16 36.00 0.22 -2.08 16 8 S -0.14 -3.38 18.55 -107.50 -1.99 -5.37 16 9 C -0.52 -14.81 10.04 30.94 0.31 -14.50 16 10 H 0.09 2.58 8.03 -52.49 -0.42 2.16 16 11 C 0.10 2.77 5.50 -17.43 -0.10 2.68 16 12 N -0.88 -26.34 13.97 55.49 0.78 -25.56 16 13 Si 0.86 21.59 27.74 -169.99 -4.71 16.88 16 14 H -0.27 -6.66 7.11 56.52 0.40 -6.25 16 15 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 16 H -0.23 -5.89 6.74 56.52 0.38 -5.51 16 17 C -0.01 -0.11 4.76 -104.63 -0.50 -0.61 16 18 C -0.12 -0.83 9.26 -39.58 -0.37 -1.20 16 19 C -0.06 -0.26 10.05 -39.58 -0.40 -0.66 16 20 C -0.12 -0.55 10.05 -39.58 -0.40 -0.95 16 21 C -0.05 -0.34 9.56 -39.58 -0.38 -0.72 16 22 C -0.04 -0.35 6.02 -79.95 -0.48 -0.83 16 23 N 0.02 0.19 3.57 33.96 0.12 0.31 16 24 O -0.19 -2.37 18.47 -29.46 -0.54 -2.91 16 25 O -0.11 -1.51 10.19 -29.46 -0.30 -1.81 16 26 H 0.06 0.73 4.69 -52.65 -0.25 0.48 16 27 H 0.09 1.37 6.79 -51.93 -0.35 1.01 16 28 H 0.05 0.69 8.03 -51.92 -0.42 0.27 16 29 H 0.05 0.71 8.08 -51.93 -0.42 0.29 16 30 H 0.09 1.45 6.36 -51.93 -0.33 1.12 16 31 H 0.06 0.74 5.43 -51.93 -0.28 0.46 16 32 H 0.39 3.55 5.73 -40.82 -0.23 3.32 16 33 H 0.10 1.63 8.14 -51.91 -0.42 1.21 16 34 H 0.10 1.65 8.14 -51.92 -0.42 1.23 16 35 H 0.27 7.53 8.31 -40.82 -0.34 7.20 16 36 H 0.15 0.76 5.64 -52.48 -0.30 0.46 16 37 H 0.15 0.24 8.06 -52.49 -0.42 -0.18 16 38 H 0.15 0.23 8.06 -52.49 -0.42 -0.19 16 39 H 0.15 0.85 7.63 -52.49 -0.40 0.45 16 LS Contribution 331.40 15.07 4.99 4.99 Total: -1.00 -34.39 331.40 -7.84 -42.23 By element: Atomic # 1 Polarization: 5.49 SS G_CDS: -4.25 Total: 1.24 kcal Atomic # 6 Polarization: -8.93 SS G_CDS: -1.77 Total: -10.70 kcal Atomic # 7 Polarization: -35.16 SS G_CDS: 0.66 Total: -34.50 kcal Atomic # 8 Polarization: -13.99 SS G_CDS: -0.77 Total: -14.77 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.71 Total: 16.88 kcal Atomic # 16 Polarization: -3.38 SS G_CDS: -1.99 Total: -5.37 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -34.39 -7.84 -42.23 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345804745.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.075 kcal (2) G-P(sol) polarization free energy of solvation -34.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.231 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds