Wall clock time and date at job start Tue Mar 31 2020 14:12:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47134 * 2 1 4 4 N 1.46502 * 109.47457 * 240.00021 * 2 1 3 5 5 C 1.34781 * 119.99940 * 65.56813 * 4 2 1 6 6 O 1.21282 * 119.99852 * 0.02562 * 5 4 2 7 7 C 1.50698 * 120.00404 * 180.02562 * 5 4 2 8 8 S 1.80992 * 109.47461 * 180.02562 * 7 5 4 9 9 C 1.76200 * 100.00068 * 180.02562 * 8 7 5 10 10 H 1.07996 * 119.99717 * 359.97438 * 9 8 7 11 11 C 1.38802 * 119.99990 * 179.97438 * 9 8 7 12 12 N 1.31624 * 120.00268 * 180.02562 * 11 9 8 13 13 Si 1.86806 * 119.99788 * 359.97438 * 11 9 8 14 14 H 1.48507 * 109.46926 * 90.00264 * 13 11 9 15 15 H 1.48505 * 109.46839 * 209.99564 * 13 11 9 16 16 H 1.48495 * 109.47180 * 330.00076 * 13 11 9 17 17 C 1.50695 * 109.47160 * 120.00144 * 2 1 3 18 18 C 1.38258 * 120.00059 * 125.21940 * 17 2 1 19 19 C 1.38218 * 119.99723 * 179.72736 * 18 17 2 20 20 C 1.38251 * 120.00194 * 0.27426 * 19 18 17 21 21 C 1.38216 * 120.00200 * 359.97438 * 20 19 18 22 22 C 1.38214 * 119.99927 * 305.41171 * 17 2 1 23 23 N 1.48012 * 120.00173 * 0.04062 * 22 17 2 24 24 O 1.21802 * 119.99961 * 173.39685 * 23 22 17 25 25 O 1.21796 * 119.99949 * 353.39443 * 23 22 17 26 26 H 1.08999 * 109.47493 * 269.48383 * 1 2 3 27 27 H 1.08998 * 109.47251 * 29.49111 * 1 2 3 28 28 H 1.09009 * 109.46924 * 149.48460 * 1 2 3 29 29 H 1.08992 * 109.47403 * 205.68999 * 3 2 1 30 30 H 1.08995 * 109.47366 * 325.69225 * 3 2 1 31 31 H 1.09002 * 109.46722 * 85.68939 * 3 2 1 32 32 H 0.96996 * 120.00206 * 245.57013 * 4 2 1 33 33 H 1.09000 * 109.46757 * 300.00036 * 7 5 4 34 34 H 1.08997 * 109.47197 * 59.99713 * 7 5 4 35 35 H 0.96993 * 120.00191 * 180.02562 * 12 11 9 36 36 H 1.08003 * 120.00243 * 359.97438 * 18 17 2 37 37 H 1.08002 * 119.99487 * 180.25144 * 19 18 17 38 38 H 1.08001 * 120.00024 * 179.97438 * 20 19 18 39 39 H 1.07993 * 120.00071 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 1.7879 -0.1684 -2.4171 6 8 1.1765 0.8735 -2.5255 7 6 2.2897 -0.8790 -3.6477 8 16 1.8262 0.0649 -5.1207 9 6 2.5173 -0.9638 -6.3733 10 1 3.0373 -1.8704 -6.1014 11 6 2.3933 -0.6089 -7.7094 12 7 2.9091 -1.3776 -8.6452 13 14 1.4931 0.9590 -8.1797 14 1 2.4568 2.0880 -8.2264 15 1 0.8659 0.7881 -9.5149 16 1 0.4414 1.2472 -7.1718 17 6 2.0323 -0.7104 1.2304 18 6 2.9137 -1.7683 1.1064 19 6 3.3788 -2.4162 2.2353 20 6 2.9582 -2.0101 3.4880 21 6 2.0730 -0.9559 3.6118 22 6 1.6087 -0.3070 2.4826 23 7 0.6611 0.8223 2.6152 24 8 0.1946 1.1011 3.7052 25 8 0.3478 1.4727 1.6342 26 1 -0.3634 -0.0093 1.0276 27 1 -0.3634 0.8945 -0.5059 28 1 -0.3633 -0.8854 -0.5219 29 1 3.0341 1.4764 -0.4455 30 1 1.3608 2.0680 -0.5792 31 1 2.0882 1.8107 1.0248 32 1 2.5076 -1.5236 -1.1095 33 1 3.3751 -0.9665 -3.5993 34 1 1.8470 -1.8736 -3.6988 35 1 2.8227 -1.1294 -9.5788 36 1 3.2420 -2.0859 0.1277 37 1 4.0706 -3.2400 2.1385 38 1 3.3213 -2.5167 4.3701 39 1 1.7442 -0.6389 4.5904 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345804745.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:13 Heat of formation + Delta-G solvation = 12.531725 kcal Electronic energy + Delta-G solvation = -25242.012550 eV Core-core repulsion = 21473.529487 eV Total energy + Delta-G solvation = -3768.483063 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.098 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.65343 -41.51903 -40.16397 -38.23565 -36.81912 -34.66866 -33.83500 -32.72683 -31.62711 -30.14928 -28.55007 -27.84238 -27.56195 -24.84920 -23.88302 -22.27400 -20.90360 -20.51662 -19.79596 -19.63651 -18.87171 -18.26871 -17.58854 -17.10461 -16.63127 -16.49013 -16.24461 -15.83150 -15.54917 -15.20064 -15.11971 -14.90939 -14.68863 -14.11994 -13.77170 -13.63457 -13.57091 -13.53284 -13.33391 -13.01646 -12.82296 -12.65069 -12.43204 -12.29816 -12.16315 -11.87264 -11.73189 -11.38136 -11.16763 -10.85095 -10.64397 -10.51430 -10.44386 -10.10600 -8.98181 -8.51397 -6.21290 -1.24426 -0.10643 0.29273 0.40465 0.97950 1.31544 1.46464 1.53941 1.56392 2.06378 2.25180 2.27456 2.71069 2.87285 2.95012 3.31343 3.63125 3.68162 3.88946 3.94356 3.95669 4.01325 4.20130 4.24854 4.43909 4.46711 4.52281 4.58858 4.64569 4.78314 4.80541 4.96490 5.09858 5.14018 5.22793 5.28592 5.37982 5.52909 5.71240 6.12087 6.39148 6.50266 6.94433 7.16858 8.60917 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.025618 B = 0.002975 C = 0.002717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.701126 B = 9409.477345 C =10301.174135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.217 3.783 3 C -0.128 4.128 4 N -0.712 5.712 5 C 0.539 3.461 6 O -0.542 6.542 7 C -0.111 4.111 8 S -0.174 6.174 9 C -0.527 4.527 10 H 0.065 0.935 11 C 0.047 3.953 12 N -0.917 5.917 13 Si 0.912 3.088 14 H -0.263 1.263 15 H -0.261 1.261 16 H -0.237 1.237 17 C -0.031 4.031 18 C -0.126 4.126 19 C -0.039 4.039 20 C -0.107 4.107 21 C -0.053 4.053 22 C -0.055 4.055 23 N 0.019 4.981 24 O -0.194 6.194 25 O -0.157 6.157 26 H 0.061 0.939 27 H 0.062 0.938 28 H 0.048 0.952 29 H 0.049 0.951 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.414 0.586 33 H 0.117 0.883 34 H 0.115 0.885 35 H 0.277 0.723 36 H 0.163 0.837 37 H 0.187 0.813 38 H 0.188 0.812 39 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.973 -5.546 29.148 29.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.131 3.869 3 C -0.186 4.186 4 N -0.371 5.371 5 C 0.324 3.676 6 O -0.417 6.417 7 C -0.261 4.261 8 S 0.053 5.947 9 C -0.675 4.675 10 H 0.083 0.917 11 C -0.159 4.159 12 N -0.555 5.555 13 Si 0.734 3.266 14 H -0.188 1.188 15 H -0.185 1.185 16 H -0.161 1.161 17 C -0.033 4.033 18 C -0.145 4.145 19 C -0.057 4.057 20 C -0.125 4.125 21 C -0.072 4.072 22 C -0.139 4.139 23 N 0.526 4.474 24 O -0.401 6.401 25 O -0.368 6.368 26 H 0.079 0.921 27 H 0.081 0.919 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.255 0.745 33 H 0.135 0.865 34 H 0.133 0.867 35 H 0.086 0.914 36 H 0.180 0.820 37 H 0.204 0.796 38 H 0.205 0.795 39 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 2.412 -4.370 28.761 29.191 hybrid contribution 0.206 -0.514 -0.751 0.933 sum 2.617 -4.884 28.010 28.553 Atomic orbital electron populations 1.22447 0.93214 1.02094 1.01506 1.19041 0.94317 0.92106 0.81469 1.22198 1.00533 0.94112 1.01767 1.46145 1.59339 1.27821 1.03789 1.19937 0.78713 0.84678 0.84261 1.90711 1.40505 1.24038 1.86494 1.23264 1.05968 1.03253 0.93650 1.84792 1.75413 1.35614 0.98898 1.22469 1.40949 1.10799 0.93249 0.91728 1.25524 0.95156 0.99795 0.95406 1.70004 1.44970 1.39255 1.01309 0.85906 0.80902 0.79964 0.79852 1.18766 1.18496 1.16083 1.19796 0.95997 0.96150 0.91346 1.21381 0.96518 0.94293 1.02312 1.22150 0.95197 0.97502 0.90840 1.21770 0.95459 0.94901 1.00375 1.21432 0.94417 0.93859 0.97490 1.21005 1.01371 0.94481 0.97080 1.43916 1.01100 1.02493 0.99854 1.94488 1.56756 1.74187 1.14622 1.94648 1.63524 1.50520 1.28099 0.92081 0.91851 0.93346 0.93254 0.91716 0.91863 0.74461 0.86525 0.86676 0.91399 0.81963 0.79591 0.79517 0.81759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.72 6.80 71.98 0.49 -3.23 16 2 C 0.22 5.20 0.77 2.85 0.00 5.20 16 3 C -0.13 -3.56 6.58 71.98 0.47 -3.09 16 4 N -0.71 -16.41 4.86 -426.33 -2.07 -18.48 16 5 C 0.54 17.73 7.28 87.66 0.64 18.37 16 6 O -0.54 -22.29 13.15 -3.04 -0.04 -22.33 16 7 C -0.11 -3.93 6.16 71.24 0.44 -3.49 16 8 S -0.17 -8.58 18.55 -56.49 -1.05 -9.63 16 9 C -0.53 -30.09 10.04 67.95 0.68 -29.41 16 10 H 0.06 3.86 8.03 -2.91 -0.02 3.84 16 11 C 0.05 2.71 5.50 84.86 0.47 3.17 16 12 N -0.92 -55.36 13.97 21.65 0.30 -55.06 16 13 Si 0.91 44.83 27.74 68.60 1.90 46.74 16 14 H -0.26 -12.65 7.11 99.48 0.71 -11.94 16 15 H -0.26 -12.07 7.11 99.48 0.71 -11.36 16 16 H -0.24 -11.66 6.74 99.48 0.67 -10.99 16 17 C -0.03 -0.53 4.76 -19.87 -0.09 -0.63 16 18 C -0.13 -1.18 9.26 22.27 0.21 -0.97 16 19 C -0.04 -0.12 10.05 22.27 0.22 0.10 16 20 C -0.11 -0.36 10.05 22.27 0.22 -0.14 16 21 C -0.05 -0.55 9.56 22.27 0.21 -0.34 16 22 C -0.06 -1.00 6.02 36.38 0.22 -0.78 16 23 N 0.02 0.47 3.57 -46.47 -0.17 0.30 16 24 O -0.19 -5.00 18.47 18.88 0.35 -4.65 16 25 O -0.16 -4.47 10.19 18.89 0.19 -4.28 16 26 H 0.06 1.64 4.69 -13.76 -0.06 1.57 16 27 H 0.06 2.08 6.79 -2.39 -0.02 2.06 16 28 H 0.05 1.31 8.03 -2.38 -0.02 1.29 16 29 H 0.05 1.35 8.08 -2.39 -0.02 1.33 16 30 H 0.06 2.17 6.36 -2.39 -0.02 2.15 16 31 H 0.06 1.68 5.43 -2.39 -0.01 1.67 16 32 H 0.41 6.22 5.73 -92.71 -0.53 5.69 16 33 H 0.12 3.71 8.14 -2.40 -0.02 3.69 16 34 H 0.12 3.71 8.14 -2.40 -0.02 3.69 16 35 H 0.28 15.47 8.31 -92.71 -0.77 14.70 16 36 H 0.16 0.92 5.64 -2.91 -0.02 0.91 16 37 H 0.19 -0.80 8.06 -2.91 -0.02 -0.82 16 38 H 0.19 -0.74 8.06 -2.91 -0.02 -0.76 16 39 H 0.16 1.34 7.63 -2.91 -0.02 1.31 16 Total: -1.00 -78.70 331.40 4.09 -74.61 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: 0.49 Total: 8.01 kcal Atomic # 6 Polarization: -19.42 SS G_CDS: 4.18 Total: -15.24 kcal Atomic # 7 Polarization: -71.30 SS G_CDS: -1.94 Total: -73.24 kcal Atomic # 8 Polarization: -31.76 SS G_CDS: 0.50 Total: -31.26 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 1.90 Total: 46.74 kcal Atomic # 16 Polarization: -8.58 SS G_CDS: -1.05 Total: -9.63 kcal Total: -78.70 4.09 -74.61 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345804745.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.146 kcal (2) G-P(sol) polarization free energy of solvation -78.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.614 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds