Wall clock time and date at job start Tue Mar 31 2020 13:45:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.37965 * 119.92705 * 2 1 4 4 C 1.39569 * 119.85696 * 180.02562 * 3 2 1 5 5 C 1.47998 * 120.14519 * 180.02562 * 4 3 2 6 6 C 1.40022 * 119.86278 * 179.97438 * 5 4 3 7 7 C 1.36199 * 120.18725 * 180.02562 * 6 5 4 8 8 C 1.40945 * 119.89855 * 0.02562 * 7 6 5 9 9 C 1.40948 * 120.13469 * 179.97438 * 8 7 6 10 10 H 1.07996 * 119.99837 * 324.90726 * 9 8 7 11 11 C 1.40004 * 119.99778 * 144.90825 * 9 8 7 12 12 N 1.30812 * 120.00062 * 151.06768 * 11 9 8 13 13 Si 1.86804 * 120.00099 * 331.06565 * 11 9 8 14 14 H 1.48497 * 109.46745 * 267.47615 * 13 11 9 15 15 H 1.48493 * 109.46699 * 27.47372 * 13 11 9 16 16 H 1.48495 * 109.46956 * 147.47753 * 13 11 9 17 17 C 1.41172 * 119.72535 * 0.24875 * 8 7 6 18 18 F 1.35105 * 120.08803 * 179.74443 * 17 8 7 19 19 C 1.36569 * 119.81301 * 359.49051 * 17 8 7 20 20 C 1.39612 * 119.71258 * 0.27343 * 4 3 2 21 21 C 1.37926 * 119.85440 * 359.45073 * 20 4 3 22 22 C 1.38359 * 119.93319 * 180.02562 * 2 1 3 23 23 C 1.50700 * 119.85159 * 359.95352 * 22 2 1 24 24 F 1.39900 * 109.47193 * 179.97438 * 23 22 2 25 25 F 1.39901 * 109.47095 * 299.99954 * 23 22 2 26 26 F 1.39900 * 109.47102 * 60.00412 * 23 22 2 27 27 H 1.09003 * 109.47023 * 90.00161 * 1 2 3 28 28 H 1.09004 * 109.46904 * 209.99733 * 1 2 3 29 29 H 1.09002 * 109.47119 * 329.99768 * 1 2 3 30 30 H 1.08001 * 120.07013 * 0.03916 * 3 2 1 31 31 H 1.08001 * 119.90584 * 0.04832 * 6 5 4 32 32 H 1.07997 * 120.04993 * 179.97438 * 7 6 5 33 33 H 0.97000 * 120.00446 * 179.97438 * 12 11 9 34 34 H 1.08005 * 119.94875 * 180.25686 * 19 17 8 35 35 H 1.07997 * 120.07639 * 179.70394 * 20 4 3 36 36 H 1.07993 * 119.93093 * 180.25424 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1953 1.1957 0.0000 4 6 3.5909 1.1940 -0.0005 5 6 4.3357 2.4729 0.0000 6 6 5.7359 2.4643 0.0000 7 6 6.4280 3.6373 0.0011 8 6 5.7327 4.8633 0.0027 9 6 6.4439 6.0802 0.0043 10 1 7.3770 6.1595 0.5422 11 6 5.9405 7.1861 -0.6912 12 7 6.2168 8.3974 -0.2818 13 14 4.8744 6.9318 -2.2040 14 1 5.7290 6.9378 -3.4184 15 1 4.1709 5.6283 -2.1002 16 1 3.8761 8.0273 -2.2957 17 6 4.3210 4.8673 0.0086 18 9 3.6470 6.0382 0.0154 19 6 3.6386 3.6844 0.0021 20 6 4.2815 -0.0194 -0.0069 21 6 3.5814 -1.2078 -0.0011 22 6 2.1973 -1.1990 -0.0005 23 6 1.4390 -2.5013 -0.0001 24 9 2.3441 -3.5681 -0.0013 25 9 0.6352 -2.5724 1.1428 26 9 0.6336 -2.5724 -1.1418 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5139 30 1 1.6552 2.1310 0.0006 31 1 6.2686 1.5248 -0.0012 32 1 7.5080 3.6281 0.0015 33 1 5.8684 9.1636 -0.7639 34 1 2.5585 3.6849 0.0024 35 1 5.3614 -0.0276 -0.0121 36 1 4.1143 -2.1471 -0.0018 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242423435.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:45:55 Heat of formation + Delta-G solvation = -158.806396 kcal Electronic energy + Delta-G solvation = -26377.294025 eV Core-core repulsion = 21904.160531 eV Total energy + Delta-G solvation = -4473.133495 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -50.16126 -47.85737 -47.67941 -47.57762 -39.51358 -37.57432 -34.28579 -33.02188 -32.15657 -29.98550 -29.74366 -27.33987 -26.36517 -24.32490 -22.56425 -22.01899 -20.87243 -20.10089 -18.45096 -18.38543 -18.29922 -17.94339 -16.47671 -15.94859 -15.44326 -15.03626 -14.69843 -14.66323 -14.54880 -14.43909 -14.26070 -14.08388 -13.78272 -13.76411 -13.60410 -13.55373 -13.28331 -13.10213 -12.72679 -12.34862 -12.24520 -12.23362 -11.96233 -11.62689 -11.48353 -11.06224 -11.00755 -10.89805 -10.39701 -10.11728 -9.82015 -9.54163 -9.02860 -8.67575 -7.98329 -7.47560 -7.36362 -4.75719 0.90142 1.49789 2.30243 2.41718 2.76191 2.99508 3.06953 3.12823 3.70041 3.82177 3.85618 4.11779 4.26596 4.51919 4.79709 4.88336 4.98786 5.07471 5.35754 5.47482 5.55297 5.58851 5.62731 5.67556 5.74061 5.92248 6.09890 6.15616 6.33415 6.40281 6.45954 6.49485 6.69960 6.82347 6.95123 7.11254 7.25072 7.42935 7.49304 7.72365 7.92230 8.24439 8.35540 9.60147 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.028054 B = 0.003001 C = 0.002851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.837352 B = 9327.326550 C = 9819.907736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.021 4.021 3 C -0.152 4.152 4 C 0.060 3.940 5 C -0.202 4.202 6 C -0.056 4.056 7 C -0.200 4.200 8 C 0.070 3.930 9 C -0.424 4.424 10 H 0.103 0.897 11 C 0.087 3.913 12 N -0.763 5.763 13 Si 0.925 3.075 14 H -0.284 1.284 15 H -0.241 1.241 16 H -0.275 1.275 17 C -0.023 4.023 18 F -0.151 7.151 19 C -0.077 4.077 20 C -0.154 4.154 21 C -0.057 4.057 22 C -0.233 4.233 23 C 0.513 3.487 24 F -0.183 7.183 25 F -0.181 7.181 26 F -0.182 7.182 27 H 0.077 0.923 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.130 0.870 31 H 0.106 0.894 32 H 0.112 0.888 33 H 0.294 0.706 34 H 0.110 0.890 35 H 0.132 0.868 36 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.808 -13.586 -0.974 15.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.021 4.021 3 C -0.169 4.169 4 C 0.060 3.940 5 C -0.204 4.204 6 C -0.074 4.074 7 C -0.219 4.219 8 C 0.066 3.934 9 C -0.449 4.449 10 H 0.120 0.880 11 C -0.139 4.139 12 N -0.383 5.383 13 Si 0.750 3.250 14 H -0.212 1.212 15 H -0.165 1.165 16 H -0.200 1.200 17 C -0.043 4.043 18 F -0.130 7.130 19 C -0.096 4.096 20 C -0.171 4.171 21 C -0.075 4.075 22 C -0.235 4.235 23 C 0.459 3.541 24 F -0.164 7.164 25 F -0.163 7.163 26 F -0.163 7.163 27 H 0.096 0.904 28 H 0.090 0.910 29 H 0.093 0.907 30 H 0.147 0.853 31 H 0.124 0.876 32 H 0.130 0.870 33 H 0.104 0.896 34 H 0.128 0.872 35 H 0.149 0.851 36 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -6.823 -13.240 -0.934 14.924 hybrid contribution -0.586 0.167 -0.545 0.817 sum -7.409 -13.073 -1.479 15.099 Atomic orbital electron populations 1.21093 0.91051 1.03787 1.03074 1.19410 0.95779 0.91745 0.95196 1.21047 0.93665 0.96952 1.05278 1.19052 0.92389 0.92905 0.89662 1.17705 0.92520 0.89818 1.20316 1.20546 0.92721 0.97264 0.96903 1.20593 0.98659 0.91084 1.11555 1.17813 0.89800 0.94316 0.91463 1.19577 1.07778 0.92085 1.25462 0.87954 1.26474 0.94151 0.94019 0.99291 1.69744 1.33795 1.00117 1.34629 0.86069 0.79279 0.81454 0.78221 1.21179 1.16484 1.19968 1.17254 0.90383 0.80175 1.16480 1.91049 1.80170 1.46880 1.94888 1.20411 0.98491 0.91227 0.99448 1.21135 1.00200 0.90930 1.04877 1.20762 0.91875 0.99001 0.95863 1.19557 0.94701 0.90836 1.18377 1.18340 0.77289 0.85061 0.73395 1.93128 1.67389 1.59621 1.96262 1.93145 1.74962 1.96662 1.51482 1.93186 1.74911 1.96811 1.51397 0.90413 0.91005 0.90669 0.85271 0.87634 0.86973 0.89566 0.87228 0.85072 0.85270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.53 8.97 36.00 0.32 -1.21 16 2 C -0.02 -0.29 5.84 -104.68 -0.61 -0.91 16 3 C -0.15 -2.32 9.07 -39.19 -0.36 -2.68 16 4 C 0.06 1.00 5.88 -104.89 -0.62 0.38 16 5 C -0.20 -3.85 5.90 -104.65 -0.62 -4.46 16 6 C -0.06 -1.04 9.36 -39.65 -0.37 -1.41 16 7 C -0.20 -4.11 9.73 -39.29 -0.38 -4.49 16 8 C 0.07 1.64 4.86 -106.73 -0.52 1.12 16 9 C -0.42 -10.52 9.37 -37.89 -0.36 -10.87 16 10 H 0.10 2.59 8.06 -52.49 -0.42 2.17 16 11 C 0.09 2.11 4.72 -17.32 -0.08 2.03 16 12 N -0.76 -18.81 13.93 55.55 0.77 -18.04 16 13 Si 0.92 20.15 25.37 -169.99 -4.31 15.84 16 14 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 15 H -0.24 -5.41 5.31 56.52 0.30 -5.11 16 16 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 17 C -0.02 -0.53 4.96 -39.07 -0.19 -0.73 16 18 F -0.15 -3.58 12.79 2.25 0.03 -3.55 16 19 C -0.08 -1.57 9.33 -39.61 -0.37 -1.94 16 20 C -0.15 -2.24 9.43 -39.18 -0.37 -2.61 16 21 C -0.06 -0.77 9.42 -39.63 -0.37 -1.14 16 22 C -0.23 -3.24 5.38 -104.51 -0.56 -3.80 16 23 C 0.51 6.62 2.81 36.01 0.10 6.72 16 24 F -0.18 -2.30 15.96 2.25 0.04 -2.26 16 25 F -0.18 -2.33 15.32 2.25 0.03 -2.30 16 26 F -0.18 -2.35 16.41 2.25 0.04 -2.31 16 27 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.07 0.80 5.50 -51.93 -0.29 0.52 16 29 H 0.07 0.77 8.08 -51.93 -0.42 0.35 16 30 H 0.13 1.87 6.18 -52.49 -0.32 1.54 16 31 H 0.11 1.63 6.17 -52.49 -0.32 1.30 16 32 H 0.11 2.11 8.06 -52.49 -0.42 1.68 16 33 H 0.29 6.50 8.30 -40.82 -0.34 6.16 16 34 H 0.11 1.99 6.17 -52.48 -0.32 1.67 16 35 H 0.13 1.70 6.18 -52.49 -0.32 1.37 16 36 H 0.13 1.46 7.14 -52.49 -0.37 1.09 16 LS Contribution 312.31 15.07 4.71 4.71 Total: -1.00 -24.84 312.31 -6.93 -31.77 By element: Atomic # 1 Polarization: 5.01 SS G_CDS: -2.88 Total: 2.13 kcal Atomic # 6 Polarization: -20.64 SS G_CDS: -5.35 Total: -25.99 kcal Atomic # 7 Polarization: -18.81 SS G_CDS: 0.77 Total: -18.04 kcal Atomic # 9 Polarization: -10.55 SS G_CDS: 0.14 Total: -10.41 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -4.31 Total: 15.84 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -24.84 -6.93 -31.77 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242423435.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.037 kcal (2) G-P(sol) polarization free energy of solvation -24.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds