Wall clock time and date at job start Tue Mar 31 2020 13:45:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.37965 * 119.92705 * 2 1 4 4 C 1.39569 * 119.85696 * 180.02562 * 3 2 1 5 5 C 1.47998 * 120.14519 * 180.02562 * 4 3 2 6 6 C 1.40022 * 119.86278 * 179.97438 * 5 4 3 7 7 C 1.36199 * 120.18725 * 180.02562 * 6 5 4 8 8 C 1.40945 * 119.89855 * 0.02562 * 7 6 5 9 9 C 1.40948 * 120.13469 * 179.97438 * 8 7 6 10 10 H 1.07996 * 119.99837 * 324.90726 * 9 8 7 11 11 C 1.40004 * 119.99778 * 144.90825 * 9 8 7 12 12 N 1.30812 * 120.00062 * 151.06768 * 11 9 8 13 13 Si 1.86804 * 120.00099 * 331.06565 * 11 9 8 14 14 H 1.48497 * 109.46745 * 267.47615 * 13 11 9 15 15 H 1.48493 * 109.46699 * 27.47372 * 13 11 9 16 16 H 1.48495 * 109.46956 * 147.47753 * 13 11 9 17 17 C 1.41172 * 119.72535 * 0.24875 * 8 7 6 18 18 F 1.35105 * 120.08803 * 179.74443 * 17 8 7 19 19 C 1.36569 * 119.81301 * 359.49051 * 17 8 7 20 20 C 1.39612 * 119.71258 * 0.27343 * 4 3 2 21 21 C 1.37926 * 119.85440 * 359.45073 * 20 4 3 22 22 C 1.38359 * 119.93319 * 180.02562 * 2 1 3 23 23 C 1.50700 * 119.85159 * 359.95352 * 22 2 1 24 24 F 1.39900 * 109.47193 * 179.97438 * 23 22 2 25 25 F 1.39901 * 109.47095 * 299.99954 * 23 22 2 26 26 F 1.39900 * 109.47102 * 60.00412 * 23 22 2 27 27 H 1.09003 * 109.47023 * 90.00161 * 1 2 3 28 28 H 1.09004 * 109.46904 * 209.99733 * 1 2 3 29 29 H 1.09002 * 109.47119 * 329.99768 * 1 2 3 30 30 H 1.08001 * 120.07013 * 0.03916 * 3 2 1 31 31 H 1.08001 * 119.90584 * 0.04832 * 6 5 4 32 32 H 1.07997 * 120.04993 * 179.97438 * 7 6 5 33 33 H 0.97000 * 120.00446 * 179.97438 * 12 11 9 34 34 H 1.08005 * 119.94875 * 180.25686 * 19 17 8 35 35 H 1.07997 * 120.07639 * 179.70394 * 20 4 3 36 36 H 1.07993 * 119.93093 * 180.25424 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1953 1.1957 0.0000 4 6 3.5909 1.1940 -0.0005 5 6 4.3357 2.4729 0.0000 6 6 5.7359 2.4643 0.0000 7 6 6.4280 3.6373 0.0011 8 6 5.7327 4.8633 0.0027 9 6 6.4439 6.0802 0.0043 10 1 7.3770 6.1595 0.5422 11 6 5.9405 7.1861 -0.6912 12 7 6.2168 8.3974 -0.2818 13 14 4.8744 6.9318 -2.2040 14 1 5.7290 6.9378 -3.4184 15 1 4.1709 5.6283 -2.1002 16 1 3.8761 8.0273 -2.2957 17 6 4.3210 4.8673 0.0086 18 9 3.6470 6.0382 0.0154 19 6 3.6386 3.6844 0.0021 20 6 4.2815 -0.0194 -0.0069 21 6 3.5814 -1.2078 -0.0011 22 6 2.1973 -1.1990 -0.0005 23 6 1.4390 -2.5013 -0.0001 24 9 2.3441 -3.5681 -0.0013 25 9 0.6352 -2.5724 1.1428 26 9 0.6336 -2.5724 -1.1418 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5139 30 1 1.6552 2.1310 0.0006 31 1 6.2686 1.5248 -0.0012 32 1 7.5080 3.6281 0.0015 33 1 5.8684 9.1636 -0.7639 34 1 2.5585 3.6849 0.0024 35 1 5.3614 -0.0276 -0.0121 36 1 4.1143 -2.1471 -0.0018 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242423435.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:45:54 Heat of formation + Delta-G solvation = -168.351033 kcal Electronic energy + Delta-G solvation = -26377.707912 eV Core-core repulsion = 21904.160531 eV Total energy + Delta-G solvation = -4473.547381 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -51.18169 -49.63498 -48.69069 -48.60044 -40.77332 -39.10362 -35.90460 -34.33955 -33.39363 -31.45732 -31.32879 -28.44364 -27.74138 -25.66625 -23.88028 -23.44870 -22.29550 -21.48128 -19.92957 -19.46867 -19.39141 -19.16623 -17.99976 -17.59374 -16.96192 -16.51571 -16.18802 -15.85879 -15.83196 -15.69463 -15.35412 -15.10335 -15.02780 -14.90195 -14.83155 -14.78086 -14.61822 -14.51801 -13.99409 -13.87531 -13.62522 -13.48769 -13.16011 -13.09569 -13.04205 -12.48900 -12.38227 -12.19507 -11.92593 -11.70878 -11.44876 -11.20987 -10.47581 -9.78327 -9.59076 -9.10223 -9.02687 -6.54426 -0.37993 0.36414 0.70555 0.81180 1.25795 1.37371 1.38782 1.71126 2.07516 2.31151 2.72433 2.78350 3.07844 3.32542 3.48267 3.66998 3.72007 3.82508 4.00010 4.19689 4.27359 4.32738 4.43462 4.59638 4.69152 4.71858 4.79619 4.83979 4.94029 5.08570 5.16900 5.20732 5.34230 5.40489 5.47968 5.57688 5.77120 5.90307 5.94736 6.02755 6.20332 6.52546 6.65672 7.94458 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.028054 B = 0.003001 C = 0.002851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.837352 B = 9327.326550 C = 9819.907736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.027 4.027 3 C -0.150 4.150 4 C 0.029 3.971 5 C -0.173 4.173 6 C -0.058 4.058 7 C -0.200 4.200 8 C 0.055 3.945 9 C -0.480 4.480 10 H 0.075 0.925 11 C 0.062 3.938 12 N -0.811 5.811 13 Si 0.962 3.038 14 H -0.276 1.276 15 H -0.251 1.251 16 H -0.268 1.268 17 C -0.047 4.047 18 F -0.161 7.161 19 C -0.089 4.089 20 C -0.143 4.143 21 C -0.058 4.058 22 C -0.227 4.227 23 C 0.517 3.483 24 F -0.178 7.178 25 F -0.180 7.180 26 F -0.180 7.180 27 H 0.088 0.912 28 H 0.075 0.925 29 H 0.086 0.914 30 H 0.135 0.865 31 H 0.147 0.853 32 H 0.125 0.875 33 H 0.298 0.702 34 H 0.130 0.870 35 H 0.152 0.848 36 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.467 -17.876 -1.435 19.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.028 4.028 3 C -0.168 4.168 4 C 0.029 3.971 5 C -0.174 4.174 6 C -0.075 4.075 7 C -0.219 4.219 8 C 0.052 3.948 9 C -0.507 4.507 10 H 0.093 0.907 11 C -0.159 4.159 12 N -0.434 5.434 13 Si 0.785 3.215 14 H -0.203 1.203 15 H -0.175 1.175 16 H -0.193 1.193 17 C -0.066 4.066 18 F -0.141 7.141 19 C -0.108 4.108 20 C -0.161 4.161 21 C -0.075 4.075 22 C -0.228 4.228 23 C 0.463 3.537 24 F -0.160 7.160 25 F -0.161 7.161 26 F -0.162 7.162 27 H 0.106 0.894 28 H 0.093 0.907 29 H 0.105 0.895 30 H 0.152 0.848 31 H 0.164 0.836 32 H 0.142 0.858 33 H 0.109 0.891 34 H 0.148 0.852 35 H 0.169 0.831 36 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -8.485 -17.545 -1.397 19.539 hybrid contribution -0.322 0.830 -0.329 0.949 sum -8.807 -16.716 -1.726 18.972 Atomic orbital electron populations 1.21161 0.89281 1.04624 1.04005 1.19676 0.97199 0.91288 0.94609 1.21207 0.93418 0.97863 1.04326 1.19051 0.92986 0.92415 0.92662 1.18147 0.93049 0.90537 1.15683 1.20953 0.92762 0.98169 0.95664 1.20886 0.99598 0.90954 1.10450 1.18023 0.90248 0.94827 0.91699 1.19421 1.08165 0.93821 1.29288 0.90661 1.26915 0.94797 0.93766 1.00406 1.69767 1.36827 1.00652 1.36155 0.85525 0.78440 0.80798 0.76689 1.20318 1.17497 1.19310 1.17608 0.90597 0.80709 1.17723 1.91011 1.80275 1.47703 1.95080 1.20708 0.99778 0.90832 0.99449 1.21380 1.01326 0.90348 1.03028 1.21068 0.91800 0.99777 0.94892 1.19880 0.95281 0.91342 1.16289 1.18185 0.77276 0.84747 0.73463 1.93144 1.67234 1.59345 1.96240 1.93156 1.74892 1.96636 1.51415 1.93196 1.74840 1.96782 1.51332 0.89356 0.90651 0.89465 0.84762 0.83589 0.85751 0.89075 0.85195 0.83066 0.82684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.56 8.97 71.23 0.64 -1.92 16 2 C -0.03 -0.66 5.84 -19.90 -0.12 -0.77 16 3 C -0.15 -4.06 9.07 22.53 0.20 -3.85 16 4 C 0.03 0.85 5.88 -20.04 -0.12 0.73 16 5 C -0.17 -6.08 5.90 -19.88 -0.12 -6.19 16 6 C -0.06 -1.97 9.36 22.23 0.21 -1.76 16 7 C -0.20 -8.09 9.73 22.46 0.22 -7.87 16 8 C 0.06 2.66 4.86 -21.23 -0.10 2.56 16 9 C -0.48 -25.45 9.37 23.36 0.22 -25.23 16 10 H 0.08 4.19 8.06 -2.91 -0.02 4.16 16 11 C 0.06 3.20 4.72 85.27 0.40 3.60 16 12 N -0.81 -42.82 13.93 21.84 0.30 -42.52 16 13 Si 0.96 42.75 25.37 68.60 1.74 44.49 16 14 H -0.28 -11.66 7.11 99.48 0.71 -10.95 16 15 H -0.25 -11.36 5.31 99.48 0.53 -10.83 16 16 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 17 C -0.05 -2.17 4.96 22.60 0.11 -2.06 16 18 F -0.16 -7.88 12.79 44.97 0.58 -7.31 16 19 C -0.09 -3.51 9.33 22.25 0.21 -3.30 16 20 C -0.14 -3.47 9.43 22.53 0.21 -3.25 16 21 C -0.06 -1.26 9.42 22.24 0.21 -1.05 16 22 C -0.23 -5.27 5.38 -19.79 -0.11 -5.38 16 23 C 0.52 11.18 2.81 71.24 0.20 11.38 16 24 F -0.18 -3.72 15.96 44.97 0.72 -3.00 16 25 F -0.18 -3.93 15.32 44.97 0.69 -3.24 16 26 F -0.18 -3.95 16.41 44.97 0.74 -3.21 16 27 H 0.09 1.52 8.14 -2.39 -0.02 1.51 16 28 H 0.07 1.39 5.50 -2.39 -0.01 1.38 16 29 H 0.09 1.46 8.08 -2.39 -0.02 1.44 16 30 H 0.13 3.44 6.18 -2.91 -0.02 3.43 16 31 H 0.15 3.78 6.17 -2.91 -0.02 3.77 16 32 H 0.12 4.63 8.06 -2.91 -0.02 4.61 16 33 H 0.30 14.16 8.30 -92.71 -0.77 13.39 16 34 H 0.13 4.48 6.17 -2.91 -0.02 4.46 16 35 H 0.15 3.03 6.18 -2.91 -0.02 3.01 16 36 H 0.16 2.62 7.14 -2.91 -0.02 2.60 16 Total: -1.00 -55.90 312.31 8.02 -47.88 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: 0.98 Total: 11.27 kcal Atomic # 6 Polarization: -46.64 SS G_CDS: 2.27 Total: -44.37 kcal Atomic # 7 Polarization: -42.82 SS G_CDS: 0.30 Total: -42.52 kcal Atomic # 9 Polarization: -19.47 SS G_CDS: 2.72 Total: -16.75 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 1.74 Total: 44.49 kcal Total: -55.90 8.02 -47.88 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242423435.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.472 kcal (2) G-P(sol) polarization free energy of solvation -55.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds