Wall clock time and date at job start Tue Mar 31 2020 13:46:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38338 * 119.88030 * 2 1 4 4 C 1.37991 * 120.12487 * 180.25210 * 3 2 1 5 5 C 1.39367 * 119.87493 * 359.74783 * 4 3 2 6 6 C 1.48388 * 120.12076 * 180.02562 * 5 4 3 7 7 C 1.38665 * 120.01234 * 309.70252 * 6 5 4 8 8 C 1.40552 * 119.65435 * 179.70267 * 7 6 5 9 9 C 1.41346 * 120.15919 * 180.29186 * 8 7 6 10 10 H 1.08000 * 120.00275 * 204.73966 * 9 8 7 11 11 C 1.39904 * 119.99614 * 24.73507 * 9 8 7 12 12 N 1.30863 * 119.99752 * 17.75203 * 11 9 8 13 13 Si 1.86797 * 119.99718 * 197.74642 * 11 9 8 14 14 H 1.48503 * 109.46664 * 90.00268 * 13 11 9 15 15 H 1.48495 * 109.47268 * 210.00075 * 13 11 9 16 16 H 1.48497 * 109.47248 * 330.00394 * 13 11 9 17 17 C 1.40850 * 119.68667 * 0.62069 * 8 7 6 18 18 C 1.37553 * 120.02289 * 359.64980 * 17 8 7 19 19 C 1.38760 * 120.34778 * 0.03037 * 18 17 8 20 20 F 1.35101 * 119.84526 * 179.97438 * 19 18 17 21 21 C 1.39321 * 119.75809 * 0.02562 * 5 4 3 22 22 C 1.38036 * 119.87667 * 359.97438 * 21 5 4 23 23 C 1.50696 * 119.94172 * 179.97438 * 22 21 5 24 24 F 1.39908 * 109.47176 * 0.02562 * 23 22 21 25 25 F 1.39897 * 109.47430 * 240.00390 * 23 22 21 26 26 F 1.39897 * 109.47513 * 119.99708 * 23 22 21 27 27 H 1.08996 * 109.47485 * 270.25188 * 1 2 3 28 28 H 1.08997 * 109.46857 * 30.25628 * 1 2 3 29 29 H 1.09005 * 109.47195 * 150.25592 * 1 2 3 30 30 H 1.08004 * 119.93931 * 359.97438 * 3 2 1 31 31 H 1.08003 * 120.06737 * 179.77190 * 4 3 2 32 32 H 1.08005 * 120.17875 * 0.02562 * 7 6 5 33 33 H 0.97001 * 119.99194 * 179.97438 * 12 11 9 34 34 H 1.07994 * 119.98956 * 179.68526 * 17 8 7 35 35 H 1.07997 * 119.82704 * 180.02562 * 18 17 8 36 36 H 1.07997 * 120.06240 * 179.97438 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1962 1.1995 0.0000 4 6 3.5761 1.2054 -0.0053 5 6 4.2754 -0.0001 -0.0052 6 6 5.7593 -0.0001 -0.0103 7 6 6.4497 0.7650 -0.9380 8 6 7.8552 0.7643 -0.9320 9 6 8.5698 1.5451 -1.8688 10 1 9.5766 1.2693 -2.1456 11 6 7.9727 2.6753 -2.4376 12 7 6.9215 3.2136 -1.8738 13 14 8.6761 3.4160 -4.0015 14 1 8.0296 2.7870 -5.1812 15 1 8.4178 4.8782 -4.0164 16 1 10.1400 3.1713 -4.0502 17 6 8.5484 -0.0236 0.0075 18 6 7.8503 -0.7821 0.9183 19 6 6.4627 -0.7771 0.9177 20 9 5.7873 -1.5263 1.8164 21 6 3.5763 -1.2052 -0.0005 22 6 2.1959 -1.1993 0.0048 23 6 1.4382 -2.5019 0.0093 24 9 2.3439 -3.5682 0.0079 25 9 0.6294 -2.5749 -1.1298 26 9 0.6380 -2.5720 1.1547 27 1 -0.3634 0.0045 1.0276 28 1 -0.3633 0.8877 -0.5178 29 1 -0.3634 -0.8923 -0.5099 30 1 1.6532 2.1331 -0.0004 31 1 4.1132 2.1424 -0.0090 32 1 5.9104 1.3626 -1.6581 33 1 6.5078 3.9974 -2.2680 34 1 9.6283 -0.0318 0.0132 35 1 8.3850 -1.3847 1.6375 36 1 4.1132 -2.1422 -0.0009 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242672311.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:46:25 Heat of formation + Delta-G solvation = -168.608447 kcal Electronic energy + Delta-G solvation = -26878.118172 eV Core-core repulsion = 22404.559628 eV Total energy + Delta-G solvation = -4473.558543 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -50.10092 -47.61291 -47.58051 -47.52901 -39.38065 -37.40101 -33.99445 -33.15173 -31.63911 -29.83256 -29.48968 -26.84785 -25.29186 -25.17209 -22.24370 -22.08578 -21.02172 -20.24943 -18.39877 -18.31641 -18.01059 -17.04094 -16.24862 -15.60623 -15.42659 -15.15365 -14.76888 -14.64630 -14.46076 -14.32224 -14.14655 -14.01146 -13.75288 -13.69583 -13.60072 -13.51508 -13.01446 -12.58155 -12.39309 -12.22423 -12.16952 -12.04490 -11.90728 -11.47012 -11.24730 -11.09626 -11.02908 -10.81205 -10.55616 -10.06081 -9.68676 -9.32013 -8.96441 -8.66361 -7.60118 -7.43114 -6.97327 -4.55185 1.16045 1.42131 2.46749 2.64965 2.79950 2.97165 3.00349 3.02060 3.75712 3.78936 3.86085 4.16759 4.35219 4.55503 4.83350 4.92325 5.26278 5.26523 5.37342 5.54795 5.58807 5.67670 5.72926 5.75913 5.95801 6.04269 6.13903 6.34388 6.53099 6.58323 6.69808 6.76955 6.95588 6.99332 7.05556 7.24383 7.51125 7.61216 7.78579 7.97972 8.33480 8.63033 8.66487 9.96476 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.015621 B = 0.003945 C = 0.003464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.037647 B = 7095.665517 C = 8081.847874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.050 4.050 3 C -0.125 4.125 4 C -0.067 4.067 5 C -0.021 4.021 6 C -0.074 4.074 7 C -0.121 4.121 8 C 0.101 3.899 9 C -0.454 4.454 10 H 0.083 0.917 11 C 0.076 3.924 12 N -0.790 5.790 13 Si 0.911 3.089 14 H -0.266 1.266 15 H -0.277 1.277 16 H -0.261 1.261 17 C -0.198 4.198 18 C -0.117 4.117 19 C -0.031 4.031 20 F -0.167 7.167 21 C -0.056 4.056 22 C -0.192 4.192 23 C 0.512 3.488 24 F -0.177 7.177 25 F -0.179 7.179 26 F -0.179 7.179 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.071 0.929 30 H 0.131 0.869 31 H 0.140 0.860 32 H 0.131 0.869 33 H 0.284 0.716 34 H 0.104 0.896 35 H 0.104 0.896 36 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.943 -3.026 1.070 10.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.050 4.050 3 C -0.143 4.143 4 C -0.085 4.085 5 C -0.021 4.021 6 C -0.075 4.075 7 C -0.140 4.140 8 C 0.098 3.902 9 C -0.483 4.483 10 H 0.101 0.899 11 C -0.143 4.143 12 N -0.415 5.415 13 Si 0.735 3.265 14 H -0.191 1.191 15 H -0.202 1.202 16 H -0.185 1.185 17 C -0.218 4.218 18 C -0.136 4.136 19 C -0.050 4.050 20 F -0.147 7.147 21 C -0.075 4.075 22 C -0.193 4.193 23 C 0.458 3.542 24 F -0.158 7.158 25 F -0.160 7.160 26 F -0.161 7.161 27 H 0.095 0.905 28 H 0.093 0.907 29 H 0.090 0.910 30 H 0.148 0.852 31 H 0.158 0.842 32 H 0.149 0.851 33 H 0.095 0.905 34 H 0.122 0.878 35 H 0.122 0.878 36 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -10.151 -2.877 1.080 10.606 hybrid contribution 0.142 0.075 -0.456 0.484 sum -10.009 -2.803 0.624 10.413 Atomic orbital electron populations 1.21058 0.90859 1.03770 1.02986 1.19535 0.95966 0.91867 0.97664 1.20913 0.94103 0.96887 1.02394 1.21634 0.93646 0.98580 0.94626 1.18865 0.93307 0.92066 0.97863 1.18412 0.89565 1.00805 0.98754 1.21343 0.94288 0.99439 0.98957 1.17585 0.91603 0.90491 0.90532 1.19602 1.01334 1.07406 1.19961 0.89907 1.25936 0.94271 0.96300 0.97779 1.69786 1.18187 1.17772 1.35734 0.86247 0.80572 0.78181 0.81465 1.19101 1.20167 1.18467 1.20922 0.98216 1.04259 0.98382 1.20471 0.91674 1.01087 1.00349 1.17228 0.89573 1.02373 0.95864 1.91301 1.80815 1.75521 1.67038 1.21081 0.91514 0.99345 0.95514 1.19637 0.94604 0.91245 1.13815 1.18306 0.77321 0.85144 0.73474 1.93169 1.67165 1.59284 1.96200 1.93144 1.74581 1.96651 1.51672 1.93186 1.75067 1.96811 1.51012 0.90512 0.90742 0.91005 0.85156 0.84242 0.85089 0.90513 0.87774 0.87777 0.84634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.46 8.98 36.01 0.32 -1.14 16 2 C -0.05 -0.72 5.85 -104.56 -0.61 -1.33 16 3 C -0.13 -1.82 9.68 -39.64 -0.38 -2.20 16 4 C -0.07 -1.16 9.51 -39.25 -0.37 -1.54 16 5 C -0.02 -0.41 5.31 -104.89 -0.56 -0.97 16 6 C -0.07 -1.66 5.47 -104.90 -0.57 -2.23 16 7 C -0.12 -2.88 8.14 -38.55 -0.31 -3.19 16 8 C 0.10 2.46 5.57 -106.86 -0.60 1.86 16 9 C -0.45 -11.01 9.04 -37.78 -0.34 -11.35 16 10 H 0.08 1.93 7.91 -52.49 -0.41 1.51 16 11 C 0.08 1.74 5.14 -17.34 -0.09 1.65 16 12 N -0.79 -18.45 10.96 55.55 0.61 -17.84 16 13 Si 0.91 17.26 29.59 -169.99 -5.03 12.23 16 14 H -0.27 -5.03 7.11 56.52 0.40 -4.63 16 15 H -0.28 -5.15 7.11 56.52 0.40 -4.74 16 16 H -0.26 -4.90 7.11 56.52 0.40 -4.50 16 17 C -0.20 -4.49 9.78 -38.84 -0.38 -4.87 16 18 C -0.12 -2.53 9.99 -39.64 -0.40 -2.93 16 19 C -0.03 -0.69 7.18 -38.73 -0.28 -0.96 16 20 F -0.17 -3.66 15.87 2.25 0.04 -3.62 16 21 C -0.06 -1.03 8.24 -39.25 -0.32 -1.35 16 22 C -0.19 -3.08 5.37 -104.67 -0.56 -3.64 16 23 C 0.51 7.59 2.81 36.00 0.10 7.70 16 24 F -0.18 -2.75 15.97 2.25 0.04 -2.71 16 25 F -0.18 -2.53 15.30 2.25 0.03 -2.49 16 26 F -0.18 -2.55 16.44 2.25 0.04 -2.52 16 27 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.07 0.70 8.08 -51.93 -0.42 0.28 16 29 H 0.07 0.81 5.49 -51.93 -0.28 0.53 16 30 H 0.13 1.50 8.06 -52.48 -0.42 1.08 16 31 H 0.14 2.44 8.04 -52.48 -0.42 2.02 16 32 H 0.13 3.18 6.15 -52.48 -0.32 2.85 16 33 H 0.28 6.02 8.30 -40.82 -0.34 5.68 16 34 H 0.10 2.17 8.06 -52.49 -0.42 1.75 16 35 H 0.10 1.99 8.06 -52.49 -0.42 1.57 16 36 H 0.14 2.50 6.87 -52.49 -0.36 2.14 16 LS Contribution 324.65 15.07 4.89 4.89 Total: -1.00 -24.89 324.65 -7.79 -32.68 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: -3.05 Total: 5.88 kcal Atomic # 6 Polarization: -21.14 SS G_CDS: -5.35 Total: -26.50 kcal Atomic # 7 Polarization: -18.45 SS G_CDS: 0.61 Total: -17.84 kcal Atomic # 9 Polarization: -11.49 SS G_CDS: 0.14 Total: -11.34 kcal Atomic # 14 Polarization: 17.26 SS G_CDS: -5.03 Total: 12.23 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -24.89 -7.79 -32.68 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242672311.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.930 kcal (2) G-P(sol) polarization free energy of solvation -24.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds